Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:29:50 (17063): wrapper (7.7.26015): starting
20:29:50 (17063): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:29:50] Arguments: --nthreads 8
[2025-11-20 20:29:50] Threads: 8
[2025-11-20 20:29:50] Checking for CVMFS
[2025-11-20 20:29:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:29:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:29:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:29:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:29:53] 2.11.2.0 32703 276978 142112 153088 2 222 15321669 25165825 4632 130560 2 135819062 99.873 77043031 3059 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 20:29:53] CVMFS is ok
[2025-11-20 20:29:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:29:53] Checking for apptainer binary...
[2025-11-20 20:29:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:29:53] Running /usr/bin/apptainer --version
[2025-11-20 20:29:53] apptainer version 1.3.2-1.el7
[2025-11-20 20:29:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:30:03] cg-vwn328.simple-grid.lan
[2025-11-20 20:30:03] apptainer works
[2025-11-20 20:30:03] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:30:03] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:30:03] Starting ATLAS job with PandaID=6891569546
[2025-11-20 20:30:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:45:00]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:45:00] 2025-11-21 20:44:14,356 | INFO     | PID=20882 has CPU usage=16.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 21:45:00] 2025-11-21 20:44:14,357 | INFO     | .. there are 9 such processes running
[2025-11-21 21:45:00] 2025-11-21 20:44:15,357 | INFO     | time since job start (90618s) is within the limit (172800.0s)
[2025-11-21 21:45:00] 2025-11-21 20:44:15,669 | INFO     | monitor loop #6074: job 0:6891569546 is in state 'finished'
[2025-11-21 21:45:00] 2025-11-21 20:44:15,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:45:00] 2025-11-21 20:44:17,363 | INFO     | time since job start (90620s) is within the limit (172800.0s)
[2025-11-21 21:45:00] 2025-11-21 20:44:18,174 | INFO     | monitor loop #6075: job 0:6891569546 is in state 'finished'
[2025-11-21 21:45:00] 2025-11-21 20:44:18,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:45:00] 2025-11-21 20:44:19,377 | INFO     | time since job start (90622s) is within the limit (172800.0s)
[2025-11-21 21:45:00] 2025-11-21 20:44:20,678 | INFO     | monitor loop #6076: job 0:6891569546 is in state 'finished'
[2025-11-21 21:45:00] 2025-11-21 20:44:20,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:45:00] 2025-11-21 20:44:21,384 | INFO     | time since job start (90624s) is within the limit (172800.0s)
[2025-11-21 21:45:00] 2025-11-21 20:44:23,187 | INFO     | monitor loop #6077: job 0:6891569546 is in state 'finished'
[2025-11-21 21:45:00] 2025-11-21 20:44:23,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:45:00] 2025-11-21 20:44:23,393 | INFO     | time since job start (90626s) is within the limit (172800.0s)
[2025-11-21 21:45:00] 2025-11-21 20:44:23,659 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 21:45:00] 2025-11-21 20:44:23,660 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 21:45:00] 2025-11-21 20:44:23,662 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891569546/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:45:00] 2025-11-21 20:44:23,663 | INFO     | extracted standard info from prmon json
[2025-11-21 21:45:00] 2025-11-21 20:44:23,663 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:45:00] 2025-11-21 20:44:23,663 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:45:00] 2025-11-21 20:44:23,695 | INFO     | fitting pss+swap vs Time
[2025-11-21 21:45:00] 2025-11-21 20:44:23,698 | INFO     | sum of square deviations: 999121868611.2773
[2025-11-21 21:45:00] 2025-11-21 20:44:23,772 | INFO     | sum of deviations: 3154073542549.345
[2025-11-21 21:45:00] 2025-11-21 20:44:23,773 | INFO     | mean x: 1763712786.3439405
[2025-11-21 21:45:00] 2025-11-21 20:44:23,773 | INFO     | mean y: 2846079.211916046
[2025-11-21 21:45:00] 2025-11-21 20:44:23,773 | INFO     | intersect: -5564922989.636007
[2025-11-21 21:45:00] 2025-11-21 20:44:23,775 | INFO     | chi2: 25.981655016605934
[2025-11-21 21:45:00] 2025-11-21 20:44:23,777 | INFO     | sum of square deviations: 989009949537.2166
[2025-11-21 21:45:00] 2025-11-21 20:44:23,841 | INFO     | sum of deviations: 3635095071110.819
[2025-11-21 21:45:00] 2025-11-21 20:44:23,841 | INFO     | mean x: 1763712633.8485055
[2025-11-21 21:45:00] 2025-11-21 20:44:23,841 | INFO     | mean y: 2853334.097826087
[2025-11-21 21:45:00] 2025-11-21 20:44:23,841 | INFO     | intersect: -6479652838.017611
[2025-11-21 21:45:00] 2025-11-21 20:44:23,843 | INFO     | chi2: 22.925897930046517
[2025-11-21 21:45:00] 2025-11-21 20:44:23,843 | INFO     | current chi2=22.925897930046517 (change=11.761210302447472 %)
[2025-11-21 21:45:00] 2025-11-21 20:44:23,843 | INFO     | right removable region: 1471
[2025-11-21 21:45:00] 2025-11-21 20:44:23,846 | INFO     | sum of square deviations: 989008738687.2166
[2025-11-21 21:45:00] 2025-11-21 20:44:23,903 | INFO     | sum of deviations: 2515222969979.9404
[2025-11-21 21:45:00] 2025-11-21 20:44:23,903 | INFO     | mean x: 1763712938.8485055
[2025-11-21 21:45:00] 2025-11-21 20:44:23,904 | INFO     | mean y: 2855712.972826087
[2025-11-21 21:45:00] 2025-11-21 20:44:23,904 | INFO     | intersect: -4482576136.831643
[2025-11-21 21:45:00] 2025-11-21 20:44:23,905 | INFO     | chi2: 20.91804541273469
[2025-11-21 21:45:00] 2025-11-21 20:44:23,906 | INFO     | current chi2=20.91804541273469 (change=19.489172651376084 %)
[2025-11-21 21:45:00] 2025-11-21 20:44:23,906 | INFO     | left removable region: 10
[2025-11-21 21:45:00] 2025-11-21 20:44:23,908 | INFO     | sum of square deviations: 967001980154.0635
[2025-11-21 21:45:00] 2025-11-21 20:44:23,985 | INFO     | sum of deviations: 2544182662572.7427
[2025-11-21 21:45:00] 2025-11-21 20:44:23,986 | INFO     | mean x: 1763712908.3586586
[2025-11-21 21:45:00] 2025-11-21 20:44:23,986 | INFO     | mean y: 2873657.7008898016
[2025-11-21 21:45:00] 2025-11-21 20:44:23,986 | INFO     | intersect: -4637455830.028746
[2025-11-21 21:45:00] 2025-11-21 20:44:23,988 | INFO     | chi2: 12.8910801045246
[2025-11-21 21:45:00] 2025-11-21 20:44:23,988 | INFO     | current memory leak: 2.63 B/s (using 1461 data points, chi2=12.89)
[2025-11-21 21:45:00] 2025-11-21 20:44:23,990 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-21 21:45:00] 2025-11-21 20:44:23,991 | INFO     | ..............................
[2025-11-21 21:45:00] 2025-11-21 20:44:23,991 | INFO     | . Timing measurements:
[2025-11-21 21:45:00] 2025-11-21 20:44:23,991 | INFO     | . get job = 0 s
[2025-11-21 21:45:00] 2025-11-21 20:44:23,991 | INFO     | . initial setup = 6 s
[2025-11-21 21:45:00] 2025-11-21 20:44:23,991 | INFO     | . payload setup = 167 s
[2025-11-21 21:45:00] 2025-11-21 20:44:23,991 | INFO     | . stage-in = 0 s
[2025-11-21 21:45:00] 2025-11-21 20:44:23,991 | INFO     | . payload execution = 90242 s
[2025-11-21 21:45:00] 2025-11-21 20:44:23,991 | INFO     | . stage-out = 4 s
[2025-11-21 21:45:00] 2025-11-21 20:44:23,991 | INFO     | . log creation = 1 s
[2025-11-21 21:45:00] 2025-11-21 20:44:23,992 | INFO     | ..............................
[2025-11-21 21:45:00] 2025-11-21 20:44:24,109 | INFO     | 
[2025-11-21 21:45:00] 2025-11-21 20:44:24,109 | INFO     | job summary report
[2025-11-21 21:45:00] 2025-11-21 20:44:24,109 | INFO     | --------------------------------------------------
[2025-11-21 21:45:00] 2025-11-21 20:44:24,109 | INFO     | PanDA job id: 6891569546
[2025-11-21 21:45:00] 2025-11-21 20:44:24,109 | INFO     | task id: 47493068
[2025-11-21 21:45:00] 2025-11-21 20:44:24,109 | INFO     | errors: (none)
[2025-11-21 21:45:00] 2025-11-21 20:44:24,109 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | pilot state: finished 
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | transexitcode: 0
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | exeerrorcode: 0
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | exeerrordiag: 
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | exitcode: 0
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | exitmsg: OK
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | cpuconsumptiontime: 334087 s
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | nevents: 1000
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | neventsw: 0
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | pid: 27468
[2025-11-21 21:45:00] 2025-11-21 20:44:24,110 | INFO     | pgrp: 27468
[2025-11-21 21:45:00] 2025-11-21 20:44:24,111 | INFO     | corecount: 8
[2025-11-21 21:45:00] 2025-11-21 20:44:24,111 | INFO     | event service: False
[2025-11-21 21:45:00] 2025-11-21 20:44:24,111 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 13: 2298852, 24: 2298908, 34: 2298936, 45: 2299092, 56: 2299120, 67: 2299148, 77: 2299176, 88: 2299232, 99: 2299540, 10
[2025-11-21 21:45:00] 2025-11-21 20:44:24,111 | INFO     | --------------------------------------------------
[2025-11-21 21:45:00] 2025-11-21 20:44:24,111 | INFO     | 
[2025-11-21 21:45:00] 2025-11-21 20:44:24,111 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-21 21:45:00] 2025-11-21 20:44:24,172 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,173 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,173 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,173 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,173 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:45:00] 2025-11-21 20:44:24,175 | INFO     | job 6891569546 has completed (purged errors)
[2025-11-21 21:45:00] 2025-11-21 20:44:24,175 | INFO     | overall cleanup function is called
[2025-11-21 21:45:00] 2025-11-21 20:44:25,191 | INFO     | --- collectZombieJob: --- 10, [27468]
[2025-11-21 21:45:00] 2025-11-21 20:44:25,191 | INFO     | zombie collector waiting for pid 27468
[2025-11-21 21:45:00] 2025-11-21 20:44:25,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:45:00] 2025-11-21 20:44:25,192 | INFO     | collected zombie processes
[2025-11-21 21:45:00] 2025-11-21 20:44:25,192 | INFO     | will attempt to kill all subprocesses of pid=27468
[2025-11-21 21:45:00] 2025-11-21 20:44:25,291 | INFO     | process IDs to be killed: [27468] (in reverse order)
[2025-11-21 21:45:00] 2025-11-21 20:44:25,371 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:45:00] 2025-11-21 20:44:25,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:45:00] 2025-11-21 20:44:25,375 | INFO     | did not find any defunct processes belonging to 27468
[2025-11-21 21:45:00] 2025-11-21 20:44:25,379 | INFO     | did not find any defunct processes belonging to 27468
[2025-11-21 21:45:00] 2025-11-21 20:44:25,381 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:45:00] 2025-11-21 20:44:25,382 | INFO     | ready for new job
[2025-11-21 21:45:00] 2025-11-21 20:44:25,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:45:00] 2025-11-21 20:44:25,391 | INFO     | ***************************************
[2025-11-21 21:45:00] 2025-11-21 20:44:25,391 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:45:00] 2025-11-21 20:44:25,392 | INFO     | ***************************************
[2025-11-21 21:45:00] 2025-11-21 20:44:25,392 | INFO     | 
[2025-11-21 21:45:00] 2025-11-21 20:44:25,392 | INFO     | pilot is running in a VM
[2025-11-21 21:45:00] 2025-11-21 20:44:25,392 | INFO     | architecture information:
[2025-11-21 21:45:00] 2025-11-21 20:44:25,395 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:45:00] 2025-11-21 20:44:25,466 | INFO     | cat /etc/os-release:
[2025-11-21 21:45:00] NAME="CentOS Linux"
[2025-11-21 21:45:00] VERSION="7 (Core)"
[2025-11-21 21:45:00] ID="centos"
[2025-11-21 21:45:00] ID_LIKE="rhel fedora"
[2025-11-21 21:45:00] VERSION_ID="7"
[2025-11-21 21:45:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:45:00] ANSI_COLOR="0;31"
[2025-11-21 21:45:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:45:00] HOME_URL="https://www.centos.org/"
[2025-11-21 21:45:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:45:00] 
[2025-11-21 21:45:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:45:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:45:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:45:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:45:00] 
[2025-11-21 21:45:00] 2025-11-21 20:44:25,467 | INFO     | ***************************************
[2025-11-21 21:45:00] 2025-11-21 20:44:25,970 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-21 21:45:00] 2025-11-21 20:44:26,047 | INFO     | sufficient remaining disk space (495132344320 B)
[2025-11-21 21:45:00] 2025-11-21 20:44:26,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:45:00] 2025-11-21 20:44:26,048 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:45:00] 2025-11-21 20:44:26,048 | INFO     | update_server=False
[2025-11-21 21:45:00] 2025-11-21 20:44:26,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:45:00] 2025-11-21 20:44:26,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:45:00] 2025-11-21 20:44:26,049 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:45:00] 2025-11-21 20:44:26,325 | INFO     | all data control threads have been joined
[2025-11-21 21:45:00] 2025-11-21 20:44:26,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:45:00] 2025-11-21 20:44:26,698 | INFO     | aborting loop
[2025-11-21 21:45:00] 2025-11-21 20:44:27,054 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:27,055 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:27,070 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:27,121 | INFO     | all payload control threads have been joined
[2025-11-21 21:45:00] 2025-11-21 20:44:27,137 | INFO     | all job control threads have been joined
[2025-11-21 21:45:00] 2025-11-21 20:44:27,152 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:27,331 | INFO     | [data] control thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:27,704 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:27,835 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:27,931 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:27,943 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:28,056 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:28,127 | INFO     | [payload] control thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:28,143 | INFO     | [job] control thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:28,289 | INFO     | [job] validate thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:28,435 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:28,506 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:28,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:45:00] 2025-11-21 20:44:32,875 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:45:00] 2025-11-21 20:44:34,835 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:45:00] 2025-11-21 20:44:35,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140606567417664)>', '<ExcThread(monitor, started 140606114342656)>']
[2025-11-21 21:45:00] 2025-11-21 20:44:40,938 | INFO     | all workflow threads have been joined
[2025-11-21 21:45:00] 2025-11-21 20:44:40,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:45:00] 2025-11-21 20:44:40,939 | INFO     | traces error code: 0
[2025-11-21 21:45:00] 2025-11-21 20:44:40,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:45:00] 2025-11-21 20:44:56,655 | INFO     | PID=20882 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 21:45:00] 2025-11-21 20:44:56,655 | INFO     | .. there are 9 such processes running
[2025-11-21 21:45:00] 2025-11-21 20:44:56,655 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:45:00] 2025-11-21 20:44:56,655 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:45:00] 2025-11-21 20:44:56,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:45:00] 2025-11-21 20:44:56,656 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:45:00] 2025-11-21 20:44:56,656 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 21:45:00] 2025-11-21 20:44:56,656 | INFO     | [monitor] control thread has ended
[2025-11-21 21:45:00] 2025-11-21 20:44:57,015 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:45:00] 2025-11-21 20:44:57,054 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:45:00] 2025-11-21 20:44:57,089 [wrapper] pilotpid: 20882
[2025-11-21 21:45:00] 2025-11-21 20:44:57,111 [wrapper] Pilot exit status: 0
[2025-11-21 21:45:00] 2025-11-21 20:44:57,483 [wrapper] pandaids: 6891569546
[2025-11-21 21:45:00] 2025-11-21 20:44:57,640 [wrapper] cleanup supervisor_pilot 30367 20883
[2025-11-21 21:45:00] 2025-11-21 20:44:57,768 [wrapper] Test setup, not cleaning
[2025-11-21 21:45:00] 2025-11-21 20:44:57,884 [wrapper] apfmon messages muted
[2025-11-21 21:45:00] 2025-11-21 20:44:58,051 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:45:00] 2025-11-21 20:44:58,190 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:45:00]  *** Error codes and diagnostics ***
[2025-11-21 21:45:00]     "exeErrorCode": 0,
[2025-11-21 21:45:00]     "exeErrorDiag": "",
[2025-11-21 21:45:00]     "pilotErrorCode": 0,
[2025-11-21 21:45:00]     "pilotErrorDiag": "",
[2025-11-21 21:45:00]  *** Listing of results directory ***
[2025-11-21 21:45:00] total 1318924
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:35 queuedata.json
[2025-11-21 21:45:00] -rwx------. 1 boinc boinc     36292 Nov 18 16:37 runpilot2-wrapper.sh
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc       100 Nov 20 20:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:45:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 20:29 run_atlas
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc       105 Nov 20 20:29 job.xml
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc      6391 Nov 20 20:29 init_data.xml
[2025-11-21 21:45:00] -rw-r--r--. 2 boinc boinc 406570383 Nov 20 20:29 EVNT.47493065._000208.pool.root.1
[2025-11-21 21:45:00] drwxrwx--x. 2 boinc boinc        68 Nov 20 20:29 shared
[2025-11-21 21:45:00] -rw-r--r--. 2 boinc boinc    590093 Nov 20 20:29 input.tar.gz
[2025-11-21 21:45:00] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:29 start_atlas.sh
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc         0 Nov 20 20:29 boinc_lockfile
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc      2773 Nov 20 20:30 pandaJob.out
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc    989440 Nov 20 20:33 agis_schedconf.cvmfs.json
[2025-11-21 21:45:00] drwx------. 5 boinc boinc      4096 Nov 20 20:33 pilot3
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc       533 Nov 21 21:20 boinc_task_state.xml
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc 910786172 Nov 21 21:43 HITS.47493068._002072.pool.root.1
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc      1033 Nov 21 21:44 memory_monitor_summary.json
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc   1526164 Nov 21 21:44 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc   2556468 Nov 21 21:44 log.47493068._002072.job.log.tgz.1
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc        95 Nov 21 21:44 pilot_heartbeat.json
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc      8628 Nov 21 21:44 heartbeat.json
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc        29 Nov 21 21:44 wrapper_checkpoint.txt
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc      8192 Nov 21 21:44 boinc_mmap_file
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc       890 Nov 21 21:44 pilotlog.txt
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc  12101063 Nov 21 21:44 log.47493068._002072.job.log.1
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc       353 Nov 21 21:45 output.list
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc       620 Nov 21 21:45 runtime_log
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc  14673920 Nov 21 21:45 result.tar.gz
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc      8703 Nov 21 21:45 runtime_log.err
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc       662 Nov 21 21:45 PZ4LDmewcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6ZFKDmihe7Zn.diag
[2025-11-21 21:45:00] -rw-r--r--. 1 boinc boinc     21474 Nov 21 21:45 stderr.txt
[2025-11-21 21:45:00] HITS file was successfully produced:
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc 910786172 Nov 21 21:43 shared/HITS.pool.root.1
[2025-11-21 21:45:00]  *** Contents of shared directory: ***
[2025-11-21 21:45:00] total 1301412
[2025-11-21 21:45:00] -rw-r--r--. 2 boinc boinc 406570383 Nov 20 20:29 ATLAS.root_0
[2025-11-21 21:45:00] -rw-r--r--. 2 boinc boinc    590093 Nov 20 20:29 input.tar.gz
[2025-11-21 21:45:00] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:29 start_atlas.sh
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc 910786172 Nov 21 21:43 HITS.pool.root.1
[2025-11-21 21:45:00] -rw-------. 1 boinc boinc  14673920 Nov 21 21:45 result.tar.gz
21:45:02 (17063): run_atlas exited; CPU time 334591.240044
21:45:02 (17063): called boinc_finish(0)

</stderr_txt>
]]>

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