Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:17:54 (14886): wrapper (7.7.26015): starting
16:17:54 (14886): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 16:17:54] Arguments: --nthreads 8
[2025-11-20 16:17:54] Threads: 8
[2025-11-20 16:17:54] Checking for CVMFS
[2025-11-20 16:17:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 16:17:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 16:17:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 16:17:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 16:17:57] 2.11.2.0 2946 276833 142140 153084 0 85 19866678 25165824 4632 130560 2 131831222 99.889 74334080 3080 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 16:17:57] CVMFS is ok
[2025-11-20 16:17:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 16:17:57] Checking for apptainer binary...
[2025-11-20 16:17:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 16:17:57] Running /usr/bin/apptainer --version
[2025-11-20 16:17:57] apptainer version 1.3.2-1.el7
[2025-11-20 16:17:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 16:18:16] cg-vwn485.simple-grid.lan
[2025-11-20 16:18:16] apptainer works
[2025-11-20 16:18:16] Set ATHENA_PROC_NUMBER=8
[2025-11-20 16:18:16] Set ATHENA_CORE_NUMBER=8
[2025-11-20 16:18:16] Starting ATLAS job with PandaID=6891569967
[2025-11-20 16:18:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 15:07:20]  *** The last 200 lines of the pilot log: ***
[2025-11-21 15:07:20] 2025-11-21 14:06:29,134 | INFO     | time since job start (81882s) is within the limit (172800.0s)
[2025-11-21 15:07:20] 2025-11-21 14:06:30,022 | INFO     | monitor loop #5544: job 0:6891569967 is in state 'finished'
[2025-11-21 15:07:20] 2025-11-21 14:06:30,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:07:20] 2025-11-21 14:06:31,140 | INFO     | time since job start (81884s) is within the limit (172800.0s)
[2025-11-21 15:07:20] 2025-11-21 14:06:32,532 | INFO     | monitor loop #5545: job 0:6891569967 is in state 'finished'
[2025-11-21 15:07:20] 2025-11-21 14:06:32,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:07:20] 2025-11-21 14:06:33,148 | INFO     | time since job start (81886s) is within the limit (172800.0s)
[2025-11-21 15:07:20] 2025-11-21 14:06:35,038 | INFO     | monitor loop #5546: job 0:6891569967 is in state 'finished'
[2025-11-21 15:07:20] 2025-11-21 14:06:35,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:07:20] 2025-11-21 14:06:35,156 | INFO     | time since job start (81888s) is within the limit (172800.0s)
[2025-11-21 15:07:20] 2025-11-21 14:06:37,169 | INFO     | time since job start (81890s) is within the limit (172800.0s)
[2025-11-21 15:07:20] 2025-11-21 14:06:37,547 | INFO     | monitor loop #5547: job 0:6891569967 is in state 'finished'
[2025-11-21 15:07:20] 2025-11-21 14:06:37,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:07:20] 2025-11-21 14:06:38,341 | INFO     | PID=18669 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 15:07:20] 2025-11-21 14:06:38,341 | INFO     | .. there are 9 such processes running
[2025-11-21 15:07:20] 2025-11-21 14:06:39,343 | INFO     | time since job start (81892s) is within the limit (172800.0s)
[2025-11-21 15:07:20] 2025-11-21 14:06:39,395 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 15:07:20] 2025-11-21 14:06:39,397 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-21 15:07:20] 2025-11-21 14:06:39,399 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6891569967/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 15:07:20] 2025-11-21 14:06:39,399 | INFO     | extracted standard info from prmon json
[2025-11-21 15:07:20] 2025-11-21 14:06:39,399 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 15:07:20] 2025-11-21 14:06:39,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 15:07:20] 2025-11-21 14:06:39,428 | INFO     | fitting pss+swap vs Time
[2025-11-21 15:07:20] 2025-11-21 14:06:39,431 | INFO     | sum of square deviations: 734459679204.9169
[2025-11-21 15:07:20] 2025-11-21 14:06:39,496 | INFO     | sum of deviations: 3440517437773.6064
[2025-11-21 15:07:20] 2025-11-21 14:06:39,497 | INFO     | mean x: 1763693259.1575394
[2025-11-21 15:07:20] 2025-11-21 14:06:39,497 | INFO     | mean y: 2813558.2828207053
[2025-11-21 15:07:20] 2025-11-21 14:06:39,497 | INFO     | intersect: -8259066004.097186
[2025-11-21 15:07:20] 2025-11-21 14:06:39,499 | INFO     | chi2: 32.09010100409289
[2025-11-21 15:07:20] 2025-11-21 14:06:39,501 | INFO     | sum of square deviations: 726226358223.1921
[2025-11-21 15:07:20] 2025-11-21 14:06:39,549 | INFO     | sum of deviations: 3866379036086.5596
[2025-11-21 15:07:20] 2025-11-21 14:06:39,549 | INFO     | mean x: 1763693106.6618977
[2025-11-21 15:07:20] 2025-11-21 14:06:39,550 | INFO     | mean y: 2821444.5090361447
[2025-11-21 15:07:20] 2025-11-21 14:06:39,550 | INFO     | intersect: -9386958995.80956
[2025-11-21 15:07:20] 2025-11-21 14:06:39,551 | INFO     | chi2: 28.996299884933894
[2025-11-21 15:07:20] 2025-11-21 14:06:39,551 | INFO     | current chi2=28.996299884933894 (change=9.640982802654309 %)
[2025-11-21 15:07:20] 2025-11-21 14:06:39,551 | INFO     | right removable region: 1327
[2025-11-21 15:07:20] 2025-11-21 14:06:39,553 | INFO     | sum of square deviations: 726225416993.1924
[2025-11-21 15:07:20] 2025-11-21 14:06:39,613 | INFO     | sum of deviations: 2876475602326.644
[2025-11-21 15:07:20] 2025-11-21 14:06:39,613 | INFO     | mean x: 1763693411.6618977
[2025-11-21 15:07:20] 2025-11-21 14:06:39,613 | INFO     | mean y: 2824004.4179216865
[2025-11-21 15:07:20] 2025-11-21 14:06:39,613 | INFO     | intersect: -6982914789.515322
[2025-11-21 15:07:20] 2025-11-21 14:06:39,615 | INFO     | chi2: 27.060274201495155
[2025-11-21 15:07:20] 2025-11-21 14:06:39,615 | INFO     | current chi2=27.060274201495155 (change=15.674075946212229 %)
[2025-11-21 15:07:20] 2025-11-21 14:06:39,615 | INFO     | left removable region: 10
[2025-11-21 15:07:20] 2025-11-21 14:06:39,617 | INFO     | sum of square deviations: 708328267627.2179
[2025-11-21 15:07:20] 2025-11-21 14:06:39,672 | INFO     | sum of deviations: 2877615572711.463
[2025-11-21 15:07:20] 2025-11-21 14:06:39,672 | INFO     | mean x: 1763693381.171602
[2025-11-21 15:07:20] 2025-11-21 14:06:39,673 | INFO     | mean y: 2843452.878511769
[2025-11-21 15:07:20] 2025-11-21 14:06:39,673 | INFO     | intersect: -7162240549.978976
[2025-11-21 15:07:20] 2025-11-21 14:06:39,674 | INFO     | chi2: 19.06743269044552
[2025-11-21 15:07:20] 2025-11-21 14:06:39,674 | INFO     | current memory leak: 4.06 B/s (using 1317 data points, chi2=19.07)
[2025-11-21 15:07:20] 2025-11-21 14:06:39,677 | INFO     | could have reported an average CPU frequency of 2249 MHz (45 samples)
[2025-11-21 15:07:20] 2025-11-21 14:06:39,677 | INFO     | ..............................
[2025-11-21 15:07:20] 2025-11-21 14:06:39,677 | INFO     | . Timing measurements:
[2025-11-21 15:07:20] 2025-11-21 14:06:39,677 | INFO     | . get job = 0 s
[2025-11-21 15:07:20] 2025-11-21 14:06:39,677 | INFO     | . initial setup = 5 s
[2025-11-21 15:07:20] 2025-11-21 14:06:39,678 | INFO     | . payload setup = 166 s
[2025-11-21 15:07:20] 2025-11-21 14:06:39,678 | INFO     | . stage-in = 0 s
[2025-11-21 15:07:20] 2025-11-21 14:06:39,678 | INFO     | . payload execution = 81429 s
[2025-11-21 15:07:20] 2025-11-21 14:06:39,678 | INFO     | . stage-out = 5 s
[2025-11-21 15:07:20] 2025-11-21 14:06:39,678 | INFO     | . log creation = 2 s
[2025-11-21 15:07:20] 2025-11-21 14:06:39,678 | INFO     | ..............................
[2025-11-21 15:07:20] 2025-11-21 14:06:39,991 | INFO     | 
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | job summary report
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | --------------------------------------------------
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | PanDA job id: 6891569967
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | task id: 47493068
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | errors: (none)
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | pilot state: finished 
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | transexitcode: 0
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | exeerrorcode: 0
[2025-11-21 15:07:20] 2025-11-21 14:06:39,992 | INFO     | exeerrordiag: 
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | exitcode: 0
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | exitmsg: OK
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | cpuconsumptiontime: 298616 s
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | nevents: 1000
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | neventsw: 0
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | pid: 25290
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | pgrp: 25290
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | corecount: 8
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | event service: False
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | sizes: {0: 2298570, 1: 2298654, 2: 2298853, 13: 2298853, 23: 2298909, 34: 2298937, 45: 2299093, 56: 2299121, 66: 2299149, 77: 2299177, 88: 2299233, 98: 2299803, 99
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | --------------------------------------------------
[2025-11-21 15:07:20] 2025-11-21 14:06:39,993 | INFO     | 
[2025-11-21 15:07:20] 2025-11-21 14:06:39,994 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-21 15:07:20] 2025-11-21 14:06:40,433 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,433 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,433 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,433 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,434 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,435 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 15:07:20] 2025-11-21 14:06:40,435 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,435 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 15:07:20] 2025-11-21 14:06:40,435 | INFO     | job 6891569967 has completed (purged errors)
[2025-11-21 15:07:20] 2025-11-21 14:06:40,435 | INFO     | overall cleanup function is called
[2025-11-21 15:07:20] 2025-11-21 14:06:41,457 | INFO     | --- collectZombieJob: --- 10, [25290]
[2025-11-21 15:07:20] 2025-11-21 14:06:41,458 | INFO     | zombie collector waiting for pid 25290
[2025-11-21 15:07:20] 2025-11-21 14:06:41,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 15:07:20] 2025-11-21 14:06:41,458 | INFO     | collected zombie processes
[2025-11-21 15:07:20] 2025-11-21 14:06:41,458 | INFO     | will attempt to kill all subprocesses of pid=25290
[2025-11-21 15:07:20] 2025-11-21 14:06:41,586 | INFO     | process IDs to be killed: [25290] (in reverse order)
[2025-11-21 15:07:20] 2025-11-21 14:06:42,467 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 15:07:20] 2025-11-21 14:06:42,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 15:07:20] 2025-11-21 14:06:42,470 | INFO     | did not find any defunct processes belonging to 25290
[2025-11-21 15:07:20] 2025-11-21 14:06:42,473 | INFO     | did not find any defunct processes belonging to 25290
[2025-11-21 15:07:20] 2025-11-21 14:06:42,527 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 15:07:20] 2025-11-21 14:06:42,527 | INFO     | ready for new job
[2025-11-21 15:07:20] 2025-11-21 14:06:42,527 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 15:07:20] 2025-11-21 14:06:42,534 | INFO     | ***************************************
[2025-11-21 15:07:20] 2025-11-21 14:06:42,534 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 15:07:20] 2025-11-21 14:06:42,534 | INFO     | ***************************************
[2025-11-21 15:07:20] 2025-11-21 14:06:42,534 | INFO     | 
[2025-11-21 15:07:20] 2025-11-21 14:06:42,535 | INFO     | pilot is running in a VM
[2025-11-21 15:07:20] 2025-11-21 14:06:42,535 | INFO     | architecture information:
[2025-11-21 15:07:20] 2025-11-21 14:06:42,550 | INFO     | executing command: cat /etc/os-release
[2025-11-21 15:07:20] 2025-11-21 14:06:42,826 | INFO     | cat /etc/os-release:
[2025-11-21 15:07:20] NAME="CentOS Linux"
[2025-11-21 15:07:20] VERSION="7 (Core)"
[2025-11-21 15:07:20] ID="centos"
[2025-11-21 15:07:20] ID_LIKE="rhel fedora"
[2025-11-21 15:07:20] VERSION_ID="7"
[2025-11-21 15:07:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 15:07:20] ANSI_COLOR="0;31"
[2025-11-21 15:07:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 15:07:20] HOME_URL="https://www.centos.org/"
[2025-11-21 15:07:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 15:07:20] 
[2025-11-21 15:07:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 15:07:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 15:07:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 15:07:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 15:07:20] 
[2025-11-21 15:07:20] 2025-11-21 14:06:42,826 | INFO     | ***************************************
[2025-11-21 15:07:20] 2025-11-21 14:06:43,330 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-21 15:07:20] 2025-11-21 14:06:43,594 | INFO     | sufficient remaining disk space (495021195264 B)
[2025-11-21 15:07:20] 2025-11-21 14:06:43,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 15:07:20] 2025-11-21 14:06:43,595 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 15:07:20] 2025-11-21 14:06:43,595 | INFO     | update_server=False
[2025-11-21 15:07:20] 2025-11-21 14:06:43,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 15:07:20] 2025-11-21 14:06:43,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 15:07:20] 2025-11-21 14:06:43,597 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:07:20] 2025-11-21 14:06:43,597 | INFO     | aborting loop
[2025-11-21 15:07:20] 2025-11-21 14:06:43,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 15:07:20] 2025-11-21 14:06:44,602 | INFO     | [job] retrieve thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:44,603 | INFO     | [job] job monitor thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:44,657 | INFO     | all data control threads have been joined
[2025-11-21 15:07:20] 2025-11-21 14:06:44,859 | INFO     | [payload] validate_post thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:44,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:07:20] 2025-11-21 14:06:44,929 | INFO     | all job control threads have been joined
[2025-11-21 15:07:20] 2025-11-21 14:06:45,056 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,080 | INFO     | all payload control threads have been joined
[2025-11-21 15:07:20] 2025-11-21 14:06:45,123 | INFO     | [payload] failed_post thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,177 | INFO     | [data] copytool_in thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,243 | INFO     | [job] validate thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,243 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,434 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,576 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,618 | INFO     | [data] copytool_out thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,663 | INFO     | [data] control thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,884 | INFO     | [job] queue monitor thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:45,936 | INFO     | [job] control thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:46,086 | INFO     | [payload] control thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:06:47,605 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 15:07:20] 2025-11-21 14:07:09,821 | INFO     | [monitor] cgroup control has ended
[2025-11-21 15:07:20] 2025-11-21 14:07:10,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139744385251136)>', '<ExcThread(monitor, started 139743664793344)>']
[2025-11-21 15:07:20] 2025-11-21 14:07:12,522 | INFO     | PID=18669 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 15:07:20] 2025-11-21 14:07:12,522 | INFO     | .. there are 9 such processes running
[2025-11-21 15:07:20] 2025-11-21 14:07:12,523 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 15:07:20] 2025-11-21 14:07:12,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 15:07:20] 2025-11-21 14:07:12,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 15:07:20] 2025-11-21 14:07:12,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 15:07:20] 2025-11-21 14:07:12,523 | INFO     | [monitor] control thread has ended
[2025-11-21 15:07:20] 2025-11-21 14:07:15,730 | INFO     | all workflow threads have been joined
[2025-11-21 15:07:20] 2025-11-21 14:07:15,731 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 15:07:20] 2025-11-21 14:07:15,731 | INFO     | traces error code: 0
[2025-11-21 15:07:20] 2025-11-21 14:07:15,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 15:07:20] 2025-11-21 14:07:16,191 [wrapper] ==== pilot stdout END ====
[2025-11-21 15:07:20] 2025-11-21 14:07:16,300 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 15:07:20] 2025-11-21 14:07:16,406 [wrapper] pilotpid: 18669
[2025-11-21 15:07:20] 2025-11-21 14:07:16,509 [wrapper] Pilot exit status: 0
[2025-11-21 15:07:20] 2025-11-21 14:07:16,872 [wrapper] pandaids: 6891569967
[2025-11-21 15:07:20] 2025-11-21 14:07:17,986 [wrapper] cleanup supervisor_pilot 15704 18670
[2025-11-21 15:07:20] 2025-11-21 14:07:18,096 [wrapper] Test setup, not cleaning
[2025-11-21 15:07:20] 2025-11-21 14:07:18,198 [wrapper] apfmon messages muted
[2025-11-21 15:07:20] 2025-11-21 14:07:18,288 [wrapper] ==== wrapper stdout END ====
[2025-11-21 15:07:20] 2025-11-21 14:07:18,364 [wrapper] ==== wrapper stderr END ====
[2025-11-21 15:07:20]  *** Error codes and diagnostics ***
[2025-11-21 15:07:20]     "exeErrorCode": 0,
[2025-11-21 15:07:20]     "exeErrorDiag": "",
[2025-11-21 15:07:20]     "pilotErrorCode": 0,
[2025-11-21 15:07:20]     "pilotErrorDiag": "",
[2025-11-21 15:07:20]  *** Listing of results directory ***
[2025-11-21 15:07:20] total 1322124
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:35 queuedata.json
[2025-11-21 15:07:20] -rwx------. 1 boinc boinc     36292 Nov 18 16:37 runpilot2-wrapper.sh
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc       100 Nov 20 16:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 15:07:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 16:17 run_atlas
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc       105 Nov 20 16:17 job.xml
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc      6392 Nov 20 16:17 init_data.xml
[2025-11-21 15:07:20] -rw-r--r--. 2 boinc boinc 410281359 Nov 20 16:17 EVNT.47493065._000224.pool.root.1
[2025-11-21 15:07:20] -rw-r--r--. 2 boinc boinc     15120 Nov 20 16:17 start_atlas.sh
[2025-11-21 15:07:20] drwxrwx--x. 2 boinc boinc        68 Nov 20 16:17 shared
[2025-11-21 15:07:20] -rw-r--r--. 2 boinc boinc    590099 Nov 20 16:17 input.tar.gz
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc         0 Nov 20 16:17 boinc_lockfile
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc      2773 Nov 20 16:18 pandaJob.out
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc    989440 Nov 20 16:21 agis_schedconf.cvmfs.json
[2025-11-21 15:07:20] drwx------. 5 boinc boinc      4096 Nov 20 16:21 pilot3
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc       533 Nov 21 14:38 boinc_task_state.xml
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc 912766108 Nov 21 15:03 HITS.47493068._002232.pool.root.1
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc      1033 Nov 21 15:04 memory_monitor_summary.json
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc   1526164 Nov 21 15:05 agis_ddmendpoints.agis.ALL.json
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc   2453592 Nov 21 15:05 log.47493068._002232.job.log.tgz.1
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc      8629 Nov 21 15:06 heartbeat.json
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc      8192 Nov 21 15:06 boinc_mmap_file
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc        29 Nov 21 15:06 wrapper_checkpoint.txt
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc        95 Nov 21 15:07 pilot_heartbeat.json
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc      4885 Nov 21 15:07 pilotlog.txt
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc  10995523 Nov 21 15:07 log.47493068._002232.job.log.1
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc       353 Nov 21 15:07 output.list
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc       620 Nov 21 15:07 runtime_log
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc  13465600 Nov 21 15:07 result.tar.gz
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc      8717 Nov 21 15:07 runtime_log.err
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc       662 Nov 21 15:07 rQIODmnwcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmANFKDmizhE7n.diag
[2025-11-21 15:07:20] -rw-r--r--. 1 boinc boinc     21506 Nov 21 15:07 stderr.txt
[2025-11-21 15:07:20] HITS file was successfully produced:
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc 912766108 Nov 21 15:03 shared/HITS.pool.root.1
[2025-11-21 15:07:20]  *** Contents of shared directory: ***
[2025-11-21 15:07:20] total 1305792
[2025-11-21 15:07:20] -rw-r--r--. 2 boinc boinc 410281359 Nov 20 16:17 ATLAS.root_0
[2025-11-21 15:07:20] -rw-r--r--. 2 boinc boinc     15120 Nov 20 16:17 start_atlas.sh
[2025-11-21 15:07:20] -rw-r--r--. 2 boinc boinc    590099 Nov 20 16:17 input.tar.gz
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc 912766108 Nov 21 15:03 HITS.pool.root.1
[2025-11-21 15:07:20] -rw-------. 1 boinc boinc  13465600 Nov 21 15:07 result.tar.gz
15:07:22 (14886): run_atlas exited; CPU time 299084.020884
15:07:22 (14886): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN