Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:45:00 (31030): wrapper (7.7.26015): starting
18:45:00 (31030): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:45:00] Arguments: --nthreads 8
[2025-11-19 18:45:00] Threads: 8
[2025-11-19 18:45:00] Checking for CVMFS
[2025-11-19 18:45:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:45:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:45:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:45:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:45:03] 2.11.2.0 32703 275433 140788 153052 0 129 14661167 25165825 3870 130560 2 135099488 99.873 76813531 3066 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:45:03] CVMFS is ok
[2025-11-19 18:45:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:45:03] Checking for apptainer binary...
[2025-11-19 18:45:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:45:03] Running /usr/bin/apptainer --version
[2025-11-19 18:45:03] apptainer version 1.3.2-1.el7
[2025-11-19 18:45:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:45:36] cg-vwn328.simple-grid.lan
[2025-11-19 18:45:36] apptainer works
[2025-11-19 18:45:36] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:45:36] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:45:37] Starting ATLAS job with PandaID=6891569618
[2025-11-19 18:45:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:29:42]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:29:42] 2025-11-20 19:28:18,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:29:42] 2025-11-20 19:28:19,365 | INFO     | time since job start (92309s) is within the limit (172800.0s)
[2025-11-20 20:29:42] 2025-11-20 19:28:21,296 | INFO     | monitor loop #6209: job 0:6891569618 is in state 'finished'
[2025-11-20 20:29:42] 2025-11-20 19:28:21,296 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:29:42] 2025-11-20 19:28:21,373 | INFO     | time since job start (92311s) is within the limit (172800.0s)
[2025-11-20 20:29:42] 2025-11-20 19:28:23,386 | INFO     | time since job start (92313s) is within the limit (172800.0s)
[2025-11-20 20:29:42] 2025-11-20 19:28:23,810 | INFO     | monitor loop #6210: job 0:6891569618 is in state 'finished'
[2025-11-20 20:29:42] 2025-11-20 19:28:23,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:29:42] 2025-11-20 19:28:25,393 | INFO     | time since job start (92315s) is within the limit (172800.0s)
[2025-11-20 20:29:42] 2025-11-20 19:28:26,319 | INFO     | monitor loop #6211: job 0:6891569618 is in state 'finished'
[2025-11-20 20:29:42] 2025-11-20 19:28:26,319 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:29:42] 2025-11-20 19:28:27,400 | INFO     | time since job start (92317s) is within the limit (172800.0s)
[2025-11-20 20:29:42] 2025-11-20 19:28:28,387 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 20:29:42] 2025-11-20 19:28:28,389 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 20:29:42] 2025-11-20 19:28:28,391 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891569618/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 20:29:42] 2025-11-20 19:28:28,392 | INFO     | extracted standard info from prmon json
[2025-11-20 20:29:42] 2025-11-20 19:28:28,392 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 20:29:42] 2025-11-20 19:28:28,392 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 20:29:42] 2025-11-20 19:28:28,435 | INFO     | fitting pss+swap vs Time
[2025-11-20 20:29:42] 2025-11-20 19:28:28,441 | INFO     | sum of square deviations: 1052818932533.7777
[2025-11-20 20:29:42] 2025-11-20 19:28:28,527 | INFO     | sum of deviations: 2475301099320.1157
[2025-11-20 20:29:42] 2025-11-20 19:28:28,527 | INFO     | mean x: 1763620930.2222223
[2025-11-20 20:29:42] 2025-11-20 19:28:28,527 | INFO     | mean y: 2839586.8230206254
[2025-11-20 20:29:42] 2025-11-20 19:28:28,527 | INFO     | intersect: -4143640584.137406
[2025-11-20 20:29:42] 2025-11-20 19:28:28,529 | INFO     | chi2: 24.922743983021086
[2025-11-20 20:29:42] 2025-11-20 19:28:28,531 | INFO     | sum of square deviations: 1042347194133.7839
[2025-11-20 20:29:42] 2025-11-20 19:28:28,596 | INFO     | sum of deviations: 2965570900444.471
[2025-11-20 20:29:42] 2025-11-20 19:28:28,596 | INFO     | mean x: 1763620777.7263017
[2025-11-20 20:29:42] 2025-11-20 19:28:28,597 | INFO     | mean y: 2846725.6328437915
[2025-11-20 20:29:42] 2025-11-20 19:28:28,597 | INFO     | intersect: -5014811965.520197
[2025-11-20 20:29:42] 2025-11-20 19:28:28,598 | INFO     | chi2: 21.71598111487747
[2025-11-20 20:29:42] 2025-11-20 19:28:28,599 | INFO     | current chi2=21.71598111487747 (change=12.866813021584871 %)
[2025-11-20 20:29:42] 2025-11-20 19:28:28,599 | INFO     | right removable region: 1497
[2025-11-20 20:29:42] 2025-11-20 19:28:28,601 | INFO     | sum of square deviations: 1042346073563.7825
[2025-11-20 20:29:42] 2025-11-20 19:28:28,662 | INFO     | sum of deviations: 1842720231677.8103
[2025-11-20 20:29:42] 2025-11-20 19:28:28,662 | INFO     | mean x: 1763621082.7263017
[2025-11-20 20:29:42] 2025-11-20 19:28:28,662 | INFO     | mean y: 2848797.8751668893
[2025-11-20 20:29:42] 2025-11-20 19:28:28,662 | INFO     | intersect: -3114983496.5776777
[2025-11-20 20:29:42] 2025-11-20 19:28:28,664 | INFO     | chi2: 20.29155974348958
[2025-11-20 20:29:42] 2025-11-20 19:28:28,665 | INFO     | current chi2=20.29155974348958 (change=18.58216030580965 %)
[2025-11-20 20:29:42] 2025-11-20 19:28:28,665 | INFO     | left removable region: 10
[2025-11-20 20:29:42] 2025-11-20 19:28:28,667 | INFO     | sum of square deviations: 1019552059617.621
[2025-11-20 20:29:42] 2025-11-20 19:28:28,727 | INFO     | sum of deviations: 1983608136582.768
[2025-11-20 20:29:42] 2025-11-20 19:28:28,727 | INFO     | mean x: 1763621052.2353733
[2025-11-20 20:29:42] 2025-11-20 19:28:28,728 | INFO     | mean y: 2864404.4835238736
[2025-11-20 20:29:42] 2025-11-20 19:28:28,728 | INFO     | intersect: -3428380754.664882
[2025-11-20 20:29:42] 2025-11-20 19:28:28,730 | INFO     | chi2: 13.792375204495091
[2025-11-20 20:29:42] 2025-11-20 19:28:28,730 | INFO     | current memory leak: 1.95 B/s (using 1487 data points, chi2=13.79)
[2025-11-20 20:29:42] 2025-11-20 19:28:28,732 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 20:29:42] 2025-11-20 19:28:28,732 | INFO     | ..............................
[2025-11-20 20:29:42] 2025-11-20 19:28:28,732 | INFO     | . Timing measurements:
[2025-11-20 20:29:42] 2025-11-20 19:28:28,732 | INFO     | . get job = 0 s
[2025-11-20 20:29:42] 2025-11-20 19:28:28,733 | INFO     | . initial setup = 6 s
[2025-11-20 20:29:42] 2025-11-20 19:28:28,733 | INFO     | . payload setup = 155 s
[2025-11-20 20:29:42] 2025-11-20 19:28:28,733 | INFO     | . stage-in = 0 s
[2025-11-20 20:29:42] 2025-11-20 19:28:28,733 | INFO     | . payload execution = 91845 s
[2025-11-20 20:29:42] 2025-11-20 19:28:28,733 | INFO     | . stage-out = 5 s
[2025-11-20 20:29:42] 2025-11-20 19:28:28,733 | INFO     | . log creation = 1 s
[2025-11-20 20:29:42] 2025-11-20 19:28:28,733 | INFO     | ..............................
[2025-11-20 20:29:42] 2025-11-20 19:28:28,884 | INFO     | 
[2025-11-20 20:29:42] 2025-11-20 19:28:28,884 | INFO     | job summary report
[2025-11-20 20:29:42] 2025-11-20 19:28:28,884 | INFO     | --------------------------------------------------
[2025-11-20 20:29:42] 2025-11-20 19:28:28,884 | INFO     | PanDA job id: 6891569618
[2025-11-20 20:29:42] 2025-11-20 19:28:28,884 | INFO     | task id: 47493068
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | errors: (none)
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | pilot state: finished 
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | transexitcode: 0
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | exeerrorcode: 0
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | exeerrordiag: 
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | exitcode: 0
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | exitmsg: OK
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | cpuconsumptiontime: 339919 s
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | nevents: 1000
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | neventsw: 0
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | pid: 9353
[2025-11-20 20:29:42] 2025-11-20 19:28:28,885 | INFO     | pgrp: 9353
[2025-11-20 20:29:42] 2025-11-20 19:28:28,886 | INFO     | corecount: 8
[2025-11-20 20:29:42] 2025-11-20 19:28:28,886 | INFO     | event service: False
[2025-11-20 20:29:42] 2025-11-20 19:28:28,886 | INFO     | sizes: {0: 2296372, 1: 2296973, 2: 2297256, 3: 2297256, 13: 2297284, 24: 2297340, 35: 2297496, 46: 2297524, 57: 2297552, 67: 2297580, 78: 2297608, 89: 2297944, 100
[2025-11-20 20:29:42] 2025-11-20 19:28:28,886 | INFO     | --------------------------------------------------
[2025-11-20 20:29:42] 2025-11-20 19:28:28,886 | INFO     | 
[2025-11-20 20:29:42] 2025-11-20 19:28:28,886 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-20 20:29:42] 2025-11-20 19:28:29,454 | INFO     | time since job start (92319s) is within the limit (172800.0s)
[2025-11-20 20:29:42] 2025-11-20 19:28:29,482 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,482 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,482 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,482 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,482 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,482 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,482 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,483 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,483 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,483 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,484 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:29:42] 2025-11-20 19:28:29,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,484 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:29:42] 2025-11-20 19:28:29,484 | INFO     | job 6891569618 has completed (purged errors)
[2025-11-20 20:29:42] 2025-11-20 19:28:29,484 | INFO     | overall cleanup function is called
[2025-11-20 20:29:42] 2025-11-20 19:28:30,509 | INFO     | --- collectZombieJob: --- 10, [9353]
[2025-11-20 20:29:42] 2025-11-20 19:28:30,509 | INFO     | zombie collector waiting for pid 9353
[2025-11-20 20:29:42] 2025-11-20 19:28:30,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:29:42] 2025-11-20 19:28:30,510 | INFO     | collected zombie processes
[2025-11-20 20:29:42] 2025-11-20 19:28:30,510 | INFO     | will attempt to kill all subprocesses of pid=9353
[2025-11-20 20:29:42] 2025-11-20 19:28:30,601 | INFO     | PID=2714 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 20:29:42] 2025-11-20 19:28:30,601 | INFO     | .. there are 9 such processes running
[2025-11-20 20:29:42] 2025-11-20 19:28:30,709 | INFO     | process IDs to be killed: [9353] (in reverse order)
[2025-11-20 20:29:42] 2025-11-20 19:28:31,684 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:29:42] 2025-11-20 19:28:31,685 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:29:42] 2025-11-20 19:28:31,688 | INFO     | did not find any defunct processes belonging to 9353
[2025-11-20 20:29:42] 2025-11-20 19:28:31,692 | INFO     | did not find any defunct processes belonging to 9353
[2025-11-20 20:29:42] 2025-11-20 19:28:31,767 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:29:42] 2025-11-20 19:28:31,768 | INFO     | ready for new job
[2025-11-20 20:29:42] 2025-11-20 19:28:31,768 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:29:42] 2025-11-20 19:28:31,776 | INFO     | ***************************************
[2025-11-20 20:29:42] 2025-11-20 19:28:31,776 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:29:42] 2025-11-20 19:28:31,776 | INFO     | ***************************************
[2025-11-20 20:29:42] 2025-11-20 19:28:31,776 | INFO     | 
[2025-11-20 20:29:42] 2025-11-20 19:28:31,777 | INFO     | pilot is running in a VM
[2025-11-20 20:29:42] 2025-11-20 19:28:31,777 | INFO     | architecture information:
[2025-11-20 20:29:42] 2025-11-20 19:28:31,792 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:29:42] 2025-11-20 19:28:32,111 | INFO     | cat /etc/os-release:
[2025-11-20 20:29:42] NAME="CentOS Linux"
[2025-11-20 20:29:42] VERSION="7 (Core)"
[2025-11-20 20:29:42] ID="centos"
[2025-11-20 20:29:42] ID_LIKE="rhel fedora"
[2025-11-20 20:29:42] VERSION_ID="7"
[2025-11-20 20:29:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:29:42] ANSI_COLOR="0;31"
[2025-11-20 20:29:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:29:42] HOME_URL="https://www.centos.org/"
[2025-11-20 20:29:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:29:42] 
[2025-11-20 20:29:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:29:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:29:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:29:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:29:42] 
[2025-11-20 20:29:42] 2025-11-20 19:28:32,112 | INFO     | ***************************************
[2025-11-20 20:29:42] 2025-11-20 19:28:32,615 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-20 20:29:42] 2025-11-20 19:28:32,850 | INFO     | sufficient remaining disk space (495162753024 B)
[2025-11-20 20:29:42] 2025-11-20 19:28:32,851 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:29:42] 2025-11-20 19:28:32,851 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:29:42] 2025-11-20 19:28:32,851 | INFO     | update_server=False
[2025-11-20 20:29:42] 2025-11-20 19:28:32,851 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:29:42] 2025-11-20 19:28:32,854 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:29:42] 2025-11-20 19:28:32,854 | INFO     | aborting loop
[2025-11-20 20:29:42] 2025-11-20 19:28:33,334 | INFO     | all payload control threads have been joined
[2025-11-20 20:29:42] 2025-11-20 19:28:33,772 | INFO     | all data control threads have been joined
[2025-11-20 20:29:42] 2025-11-20 19:28:33,857 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:33,859 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:33,899 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:29:42] 2025-11-20 19:28:34,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:29:42] 2025-11-20 19:28:34,060 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:34,079 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:34,094 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:34,331 | INFO     | [job] validate thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:34,340 | INFO     | [payload] control thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:34,346 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:29:42] 2025-11-20 19:28:34,370 | INFO     | all job control threads have been joined
[2025-11-20 20:29:42] 2025-11-20 19:28:34,416 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:34,417 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:34,742 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:34,779 | INFO     | [data] control thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:34,905 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:35,007 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:35,376 | INFO     | [job] control thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:36,060 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:28:38,355 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:29:42] 2025-11-20 19:29:01,643 | INFO     | 92328s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 20:29:42] 2025-11-20 19:29:02,800 | INFO     | PID=2714 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 20:29:42] 2025-11-20 19:29:02,801 | INFO     | .. there are 9 such processes running
[2025-11-20 20:29:42] 2025-11-20 19:29:02,803 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:29:42] 2025-11-20 19:29:02,803 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:29:42] 2025-11-20 19:29:02,803 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:29:42] 2025-11-20 19:29:30,873 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:29:42] 2025-11-20 19:29:32,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140680098043712)>', '<ExcThread(monitor, started 140679791482624)>']
[2025-11-20 20:29:42] 2025-11-20 19:29:32,980 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:29:42] 2025-11-20 19:29:32,980 | INFO     | [monitor] control thread has ended
[2025-11-20 20:29:42] 2025-11-20 19:29:37,217 | INFO     | all workflow threads have been joined
[2025-11-20 20:29:42] 2025-11-20 19:29:37,217 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:29:42] 2025-11-20 19:29:37,218 | INFO     | traces error code: 0
[2025-11-20 20:29:42] 2025-11-20 19:29:37,218 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:29:42] 2025-11-20 19:29:37,649 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:29:42] 2025-11-20 19:29:37,755 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:29:42] 2025-11-20 19:29:37,830 [wrapper] pilotpid: 2714
[2025-11-20 20:29:42] 2025-11-20 19:29:37,887 [wrapper] Pilot exit status: 0
[2025-11-20 20:29:42] 2025-11-20 19:29:38,273 [wrapper] pandaids: 6891569618
[2025-11-20 20:29:42] 2025-11-20 19:29:39,192 [wrapper] cleanup supervisor_pilot 14469 2715
[2025-11-20 20:29:42] 2025-11-20 19:29:39,326 [wrapper] Test setup, not cleaning
[2025-11-20 20:29:42] 2025-11-20 19:29:39,437 [wrapper] apfmon messages muted
[2025-11-20 20:29:42] 2025-11-20 19:29:39,515 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:29:42] 2025-11-20 19:29:39,567 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:29:42]  *** Error codes and diagnostics ***
[2025-11-20 20:29:42]     "exeErrorCode": 0,
[2025-11-20 20:29:42]     "exeErrorDiag": "",
[2025-11-20 20:29:42]     "pilotErrorCode": 0,
[2025-11-20 20:29:42]     "pilotErrorDiag": "",
[2025-11-20 20:29:42]  *** Listing of results directory ***
[2025-11-20 20:29:42] total 1326844
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:35 queuedata.json
[2025-11-20 20:29:42] -rwx------. 1 boinc boinc     36292 Nov 18 16:37 runpilot2-wrapper.sh
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:29:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:44 run_atlas
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:44 job.xml
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc      6390 Nov 19 18:45 init_data.xml
[2025-11-20 20:29:42] -rw-r--r--. 2 boinc boinc 408549679 Nov 19 18:45 EVNT.47493065._000214.pool.root.1
[2025-11-20 20:29:42] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:45 shared
[2025-11-20 20:29:42] -rw-r--r--. 2 boinc boinc    590100 Nov 19 18:45 input.tar.gz
[2025-11-20 20:29:42] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:45 start_atlas.sh
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:45 boinc_lockfile
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc      2773 Nov 19 18:45 pandaJob.out
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc    989434 Nov 19 18:49 agis_schedconf.cvmfs.json
[2025-11-20 20:29:42] drwx------. 5 boinc boinc      4096 Nov 19 18:49 pilot3
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:55 boinc_task_state.xml
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc 916567911 Nov 20 20:25 HITS.47493068._002132.pool.root.1
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc      1031 Nov 20 20:26 memory_monitor_summary.json
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc   1526164 Nov 20 20:26 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc   2568244 Nov 20 20:26 log.47493068._002132.job.log.tgz.1
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc      8640 Nov 20 20:28 heartbeat.json
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc        95 Nov 20 20:29 pilot_heartbeat.json
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:29 boinc_mmap_file
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:29 wrapper_checkpoint.txt
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc      4999 Nov 20 20:29 pilotlog.txt
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc  12260690 Nov 20 20:29 log.47493068._002132.job.log.1
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc       353 Nov 20 20:29 output.list
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:29 runtime_log
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc  14848000 Nov 20 20:29 result.tar.gz
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc      8703 Nov 20 20:29 runtime_log.err
[2025-11-20 20:29:42] -rw-------. 1 boinc boinc       662 Nov 20 20:29 8zoMDmnwcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8LFKDmVTzYRm.diag
[2025-11-20 20:29:42] -rw-r--r--. 1 boinc boinc     21518 Nov 20 20:29 stderr.txt
[2025-11-20 20:29:43] HITS file was successfully produced:
[2025-11-20 20:29:43] -rw-------. 1 boinc boinc 916567911 Nov 20 20:25 shared/HITS.pool.root.1
[2025-11-20 20:29:43]  *** Contents of shared directory: ***
[2025-11-20 20:29:43] total 1309160
[2025-11-20 20:29:43] -rw-r--r--. 2 boinc boinc 408549679 Nov 19 18:45 ATLAS.root_0
[2025-11-20 20:29:43] -rw-r--r--. 2 boinc boinc    590100 Nov 19 18:45 input.tar.gz
[2025-11-20 20:29:43] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:45 start_atlas.sh
[2025-11-20 20:29:43] -rw-------. 1 boinc boinc 916567911 Nov 20 20:25 HITS.pool.root.1
[2025-11-20 20:29:43] -rw-------. 1 boinc boinc  14848000 Nov 20 20:29 result.tar.gz
20:29:44 (31030): run_atlas exited; CPU time 340518.314221
20:29:44 (31030): called boinc_finish(0)

</stderr_txt>
]]>

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