Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:11:09 (22789): wrapper (7.7.26015): starting
19:11:09 (22789): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 19:11:09] Arguments: --nthreads 8
[2025-11-19 19:11:09] Threads: 8
[2025-11-19 19:11:09] Checking for CVMFS
[2025-11-19 19:11:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:11:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:11:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:11:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:11:10] 2.11.2.0 23762 275652 142016 153052 2 236 22784606 25165824 3197 130560 2 127198320 99.866 83748520 3315 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 19:11:10] CVMFS is ok
[2025-11-19 19:11:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:11:10] Checking for apptainer binary...
[2025-11-19 19:11:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:11:10] Running /usr/bin/apptainer --version
[2025-11-19 19:11:10] apptainer version 1.3.2-1.el7
[2025-11-19 19:11:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:11:11] cg-vwn242.simple-grid.lan
[2025-11-19 19:11:11] apptainer works
[2025-11-19 19:11:11] Set ATHENA_PROC_NUMBER=8
[2025-11-19 19:11:11] Set ATHENA_CORE_NUMBER=8
[2025-11-19 19:11:11] Starting ATLAS job with PandaID=6891569606
[2025-11-19 19:11:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:41:27]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:41:27] 2025-11-20 19:40:32,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:41:27] 2025-11-20 19:40:33,290 | INFO     | time since job start (91735s) is within the limit (172800.0s)
[2025-11-20 20:41:27] 2025-11-20 19:40:34,553 | INFO     | monitor loop #6110: job 0:6891569606 is in state 'finished'
[2025-11-20 20:41:27] 2025-11-20 19:40:34,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:41:27] 2025-11-20 19:40:35,297 | INFO     | time since job start (91737s) is within the limit (172800.0s)
[2025-11-20 20:41:27] 2025-11-20 19:40:35,298 | INFO     | 91741s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 20:41:27] 2025-11-20 19:40:37,060 | INFO     | monitor loop #6111: job 0:6891569606 is in state 'finished'
[2025-11-20 20:41:27] 2025-11-20 19:40:37,061 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:41:27] 2025-11-20 19:40:37,304 | INFO     | time since job start (91739s) is within the limit (172800.0s)
[2025-11-20 20:41:27] 2025-11-20 19:40:38,530 | INFO     | PID=28522 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:41:27] 2025-11-20 19:40:38,530 | INFO     | .. there are 9 such processes running
[2025-11-20 20:41:27] 2025-11-20 19:40:39,532 | INFO     | time since job start (91741s) is within the limit (172800.0s)
[2025-11-20 20:41:27] 2025-11-20 19:40:39,568 | INFO     | monitor loop #6112: job 0:6891569606 is in state 'finished'
[2025-11-20 20:41:27] 2025-11-20 19:40:39,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:41:27] 2025-11-20 19:40:40,083 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 20:41:27] 2025-11-20 19:40:40,084 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 20:41:27] 2025-11-20 19:40:40,086 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891569606/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 20:41:27] 2025-11-20 19:40:40,087 | INFO     | extracted standard info from prmon json
[2025-11-20 20:41:27] 2025-11-20 19:40:40,087 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 20:41:27] 2025-11-20 19:40:40,087 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 20:41:27] 2025-11-20 19:40:40,120 | INFO     | fitting pss+swap vs Time
[2025-11-20 20:41:27] 2025-11-20 19:40:40,123 | INFO     | sum of square deviations: 1048625623224.7467
[2025-11-20 20:41:27] 2025-11-20 19:40:40,217 | INFO     | sum of deviations: 2606932031375.003
[2025-11-20 20:41:27] 2025-11-20 19:40:40,217 | INFO     | mean x: 1763621760.113258
[2025-11-20 20:41:27] 2025-11-20 19:40:40,218 | INFO     | mean y: 2859152.44703531
[2025-11-20 20:41:27] 2025-11-20 19:40:40,218 | INFO     | intersect: -4381586502.7435055
[2025-11-20 20:41:27] 2025-11-20 19:40:40,220 | INFO     | chi2: 16.990353718098422
[2025-11-20 20:41:27] 2025-11-20 19:40:40,231 | INFO     | sum of square deviations: 1038181732393.5284
[2025-11-20 20:41:27] 2025-11-20 19:40:40,307 | INFO     | sum of deviations: 3104655376361.976
[2025-11-20 20:41:27] 2025-11-20 19:40:40,308 | INFO     | mean x: 1763621607.6169786
[2025-11-20 20:41:27] 2025-11-20 19:40:40,308 | INFO     | mean y: 2866418.560160428
[2025-11-20 20:41:27] 2025-11-20 19:40:40,308 | INFO     | intersect: -5271197972.201735
[2025-11-20 20:41:27] 2025-11-20 19:40:40,310 | INFO     | chi2: 13.75582615784224
[2025-11-20 20:41:27] 2025-11-20 19:40:40,310 | INFO     | current chi2=13.75582615784224 (change=19.03743508771514 %)
[2025-11-20 20:41:27] 2025-11-20 19:40:40,310 | INFO     | right removable region: 1495
[2025-11-20 20:41:27] 2025-11-20 19:40:40,313 | INFO     | sum of square deviations: 1038180713083.5281
[2025-11-20 20:41:27] 2025-11-20 19:40:40,370 | INFO     | sum of deviations: 2111680492618.7844
[2025-11-20 20:41:27] 2025-11-20 19:40:40,371 | INFO     | mean x: 1763621912.6169786
[2025-11-20 20:41:27] 2025-11-20 19:40:40,371 | INFO     | mean y: 2866380.929812834
[2025-11-20 20:41:27] 2025-11-20 19:40:40,371 | INFO     | intersect: -3584376131.1824965
[2025-11-20 20:41:27] 2025-11-20 19:40:40,373 | INFO     | chi2: 14.171694176123209
[2025-11-20 20:41:27] 2025-11-20 19:40:40,373 | INFO     | current chi2=14.171694176123209 (change=16.58976374913683 %)
[2025-11-20 20:41:27] 2025-11-20 19:40:40,373 | INFO     | left removable region: 10
[2025-11-20 20:41:27] 2025-11-20 19:40:40,375 | INFO     | sum of square deviations: 1015448191566.9393
[2025-11-20 20:41:27] 2025-11-20 19:40:40,437 | INFO     | sum of deviations: 2553895041984.6665
[2025-11-20 20:41:27] 2025-11-20 19:40:40,438 | INFO     | mean x: 1763621882.1218855
[2025-11-20 20:41:27] 2025-11-20 19:40:40,438 | INFO     | mean y: 2877393.847138047
[2025-11-20 20:41:27] 2025-11-20 19:40:40,438 | INFO     | intersect: -4432706044.177857
[2025-11-20 20:41:27] 2025-11-20 19:40:40,440 | INFO     | chi2: 10.027859039192618
[2025-11-20 20:41:27] 2025-11-20 19:40:40,440 | INFO     | current memory leak: 2.52 B/s (using 1485 data points, chi2=10.03)
[2025-11-20 20:41:27] 2025-11-20 19:40:40,443 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 20:41:27] 2025-11-20 19:40:40,443 | INFO     | ..............................
[2025-11-20 20:41:27] 2025-11-20 19:40:40,444 | INFO     | . Timing measurements:
[2025-11-20 20:41:27] 2025-11-20 19:40:40,444 | INFO     | . get job = 0 s
[2025-11-20 20:41:27] 2025-11-20 19:40:40,444 | INFO     | . initial setup = 4 s
[2025-11-20 20:41:27] 2025-11-20 19:40:40,444 | INFO     | . payload setup = 20 s
[2025-11-20 20:41:27] 2025-11-20 19:40:40,444 | INFO     | . stage-in = 0 s
[2025-11-20 20:41:27] 2025-11-20 19:40:40,444 | INFO     | . payload execution = 91565 s
[2025-11-20 20:41:27] 2025-11-20 19:40:40,444 | INFO     | . stage-out = 9 s
[2025-11-20 20:41:27] 2025-11-20 19:40:40,444 | INFO     | . log creation = 2 s
[2025-11-20 20:41:27] 2025-11-20 19:40:40,444 | INFO     | ..............................
[2025-11-20 20:41:27] 2025-11-20 19:40:40,582 | INFO     | 
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | job summary report
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | --------------------------------------------------
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | PanDA job id: 6891569606
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | task id: 47493068
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | errors: (none)
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | pilot state: finished 
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | transexitcode: 0
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | exeerrorcode: 0
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | exeerrordiag: 
[2025-11-20 20:41:27] 2025-11-20 19:40:40,583 | INFO     | exitcode: 0
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | exitmsg: OK
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | cpuconsumptiontime: 338331 s
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | nevents: 1000
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | neventsw: 0
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | pid: 8977
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | pgrp: 8977
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | corecount: 8
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | event service: False
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | sizes: {0: 2297029, 1: 2297228, 2: 2297228, 12: 2297256, 23: 2297284, 26: 2297574, 34: 2297730, 91590: 2361858, 91600: 2372448, 91601: 2372504, 91697: 2372750}
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | --------------------------------------------------
[2025-11-20 20:41:27] 2025-11-20 19:40:40,584 | INFO     | 
[2025-11-20 20:41:27] 2025-11-20 19:40:40,585 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-20 20:41:27] 2025-11-20 19:40:41,141 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,142 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,142 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,142 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,142 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,142 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,142 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,142 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,143 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,143 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,143 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,143 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,143 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,143 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,143 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,144 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,144 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,144 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:41:27] 2025-11-20 19:40:41,144 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,144 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:41:27] 2025-11-20 19:40:41,144 | INFO     | job 6891569606 has completed (purged errors)
[2025-11-20 20:41:27] 2025-11-20 19:40:41,145 | INFO     | overall cleanup function is called
[2025-11-20 20:41:27] 2025-11-20 19:40:42,163 | INFO     | --- collectZombieJob: --- 10, [8977]
[2025-11-20 20:41:27] 2025-11-20 19:40:42,163 | INFO     | zombie collector waiting for pid 8977
[2025-11-20 20:41:27] 2025-11-20 19:40:42,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:41:27] 2025-11-20 19:40:42,164 | INFO     | collected zombie processes
[2025-11-20 20:41:27] 2025-11-20 19:40:42,164 | INFO     | will attempt to kill all subprocesses of pid=8977
[2025-11-20 20:41:27] 2025-11-20 19:40:42,276 | INFO     | process IDs to be killed: [8977] (in reverse order)
[2025-11-20 20:41:27] 2025-11-20 19:40:42,998 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:41:27] 2025-11-20 19:40:42,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:41:27] 2025-11-20 19:40:43,011 | INFO     | did not find any defunct processes belonging to 8977
[2025-11-20 20:41:27] 2025-11-20 19:40:43,015 | INFO     | did not find any defunct processes belonging to 8977
[2025-11-20 20:41:27] 2025-11-20 19:40:43,054 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:41:27] 2025-11-20 19:40:43,054 | INFO     | ready for new job
[2025-11-20 20:41:27] 2025-11-20 19:40:43,054 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:41:27] 2025-11-20 19:40:43,062 | INFO     | ***************************************
[2025-11-20 20:41:27] 2025-11-20 19:40:43,062 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:41:27] 2025-11-20 19:40:43,062 | INFO     | ***************************************
[2025-11-20 20:41:27] 2025-11-20 19:40:43,062 | INFO     | 
[2025-11-20 20:41:27] 2025-11-20 19:40:43,063 | INFO     | pilot is running in a VM
[2025-11-20 20:41:27] 2025-11-20 19:40:43,063 | INFO     | architecture information:
[2025-11-20 20:41:27] 2025-11-20 19:40:43,068 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:41:27] 2025-11-20 19:40:43,390 | INFO     | cat /etc/os-release:
[2025-11-20 20:41:27] NAME="CentOS Linux"
[2025-11-20 20:41:27] VERSION="7 (Core)"
[2025-11-20 20:41:27] ID="centos"
[2025-11-20 20:41:27] ID_LIKE="rhel fedora"
[2025-11-20 20:41:27] VERSION_ID="7"
[2025-11-20 20:41:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:41:27] ANSI_COLOR="0;31"
[2025-11-20 20:41:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:41:27] HOME_URL="https://www.centos.org/"
[2025-11-20 20:41:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:41:27] 
[2025-11-20 20:41:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:41:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:41:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:41:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:41:27] 
[2025-11-20 20:41:27] 2025-11-20 19:40:43,390 | INFO     | ***************************************
[2025-11-20 20:41:27] 2025-11-20 19:40:43,895 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-20 20:41:27] 2025-11-20 19:40:44,165 | INFO     | sufficient remaining disk space (495176384512 B)
[2025-11-20 20:41:27] 2025-11-20 19:40:44,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:41:27] 2025-11-20 19:40:44,166 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:41:27] 2025-11-20 19:40:44,166 | INFO     | update_server=False
[2025-11-20 20:41:27] 2025-11-20 19:40:44,166 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:41:27] 2025-11-20 19:40:44,341 | INFO     | all data control threads have been joined
[2025-11-20 20:41:27] 2025-11-20 19:40:44,598 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 20:41:27] 2025-11-20 19:40:44,599 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 20:41:27] 2025-11-20 19:40:44,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:41:27] 2025-11-20 19:40:44,599 | INFO     | will abort loop
[2025-11-20 20:41:27] 2025-11-20 19:40:44,655 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:41:27] 2025-11-20 19:40:44,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:41:27] 2025-11-20 19:40:45,172 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:45,191 | INFO     | [job] validate thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:45,270 | INFO     | all job control threads have been joined
[2025-11-20 20:41:27] 2025-11-20 19:40:45,316 | INFO     | all payload control threads have been joined
[2025-11-20 20:41:27] 2025-11-20 19:40:45,322 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:45,323 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:45,347 | INFO     | [data] control thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:45,354 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:45,601 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:41:27] 2025-11-20 19:40:45,605 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:45,782 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:45,954 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:46,064 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:46,276 | INFO     | [job] control thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:46,322 | INFO     | [payload] control thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:46,520 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:46,607 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:46,662 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:40:48,783 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:41:27] 2025-11-20 19:41:12,748 | INFO     | PID=28522 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:41:27] 2025-11-20 19:41:12,748 | INFO     | .. there are 9 such processes running
[2025-11-20 20:41:27] 2025-11-20 19:41:12,750 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:41:27] 2025-11-20 19:41:12,750 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:41:27] 2025-11-20 19:41:12,750 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:41:27] 2025-11-20 19:41:18,347 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:41:27] 2025-11-20 19:41:19,949 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159074129728)>', '<ExcThread(monitor, started 140158775047936)>']
[2025-11-20 20:41:27] 2025-11-20 19:41:20,798 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:41:27] 2025-11-20 19:41:20,799 | INFO     | [monitor] control thread has ended
[2025-11-20 20:41:27] 2025-11-20 19:41:24,975 | INFO     | all workflow threads have been joined
[2025-11-20 20:41:27] 2025-11-20 19:41:24,976 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:41:27] 2025-11-20 19:41:24,976 | INFO     | traces error code: 0
[2025-11-20 20:41:27] 2025-11-20 19:41:24,976 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:41:27] 2025-11-20 19:41:25,405 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:41:27] 2025-11-20 19:41:25,467 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:41:27] 2025-11-20 19:41:25,573 [wrapper] pilotpid: 28522
[2025-11-20 20:41:27] 2025-11-20 19:41:25,613 [wrapper] Pilot exit status: 0
[2025-11-20 20:41:27] 2025-11-20 19:41:26,068 [wrapper] pandaids: 6891569606
[2025-11-20 20:41:27] 2025-11-20 19:41:26,721 [wrapper] cleanup supervisor_pilot  5859 28523
[2025-11-20 20:41:27] 2025-11-20 19:41:26,788 [wrapper] Test setup, not cleaning
[2025-11-20 20:41:27] 2025-11-20 19:41:26,829 [wrapper] apfmon messages muted
[2025-11-20 20:41:27] 2025-11-20 19:41:26,869 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:41:27] 2025-11-20 19:41:26,992 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:41:27]  *** Error codes and diagnostics ***
[2025-11-20 20:41:27]     "exeErrorCode": 0,
[2025-11-20 20:41:27]     "exeErrorDiag": "",
[2025-11-20 20:41:27]     "pilotErrorCode": 0,
[2025-11-20 20:41:27]     "pilotErrorDiag": "",
[2025-11-20 20:41:27]  *** Listing of results directory ***
[2025-11-20 20:41:27] total 1328888
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:35 queuedata.json
[2025-11-20 20:41:27] -rwx------. 1 boinc boinc     36292 Nov 18 16:37 runpilot2-wrapper.sh
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc       100 Nov 19 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:41:27] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 19:11 run_atlas
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc       105 Nov 19 19:11 job.xml
[2025-11-20 20:41:27] -rw-r--r--. 2 boinc boinc 409746790 Nov 19 19:11 EVNT.47493065._000212.pool.root.1
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc      6391 Nov 19 19:11 init_data.xml
[2025-11-20 20:41:27] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:11 start_atlas.sh
[2025-11-20 20:41:27] drwxrwx--x. 2 boinc boinc        68 Nov 19 19:11 shared
[2025-11-20 20:41:27] -rw-r--r--. 2 boinc boinc    590103 Nov 19 19:11 input.tar.gz
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc         0 Nov 19 19:11 boinc_lockfile
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc      2773 Nov 19 19:11 pandaJob.out
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc    989434 Nov 19 19:11 agis_schedconf.cvmfs.json
[2025-11-20 20:41:27] drwx------. 5 boinc boinc      4096 Nov 19 19:11 pilot3
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc       533 Nov 20 20:17 boinc_task_state.xml
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc 917632320 Nov 20 20:37 HITS.47493068._002120.pool.root.1
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc      1032 Nov 20 20:38 memory_monitor_summary.json
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc   1526164 Nov 20 20:38 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc   2563330 Nov 20 20:39 log.47493068._002120.job.log.tgz.1
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc      8627 Nov 20 20:40 heartbeat.json
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:41 wrapper_checkpoint.txt
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:41 boinc_mmap_file
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc        95 Nov 20 20:41 pilot_heartbeat.json
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc      5070 Nov 20 20:41 pilotlog.txt
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc  12182396 Nov 20 20:41 log.47493068._002120.job.log.1
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc       353 Nov 20 20:41 output.list
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:41 runtime_log
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc  14766080 Nov 20 20:41 result.tar.gz
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc      8703 Nov 20 20:41 runtime_log.err
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc       662 Nov 20 20:41 jJaMDmnwcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyLFKDmSlxn6m.diag
[2025-11-20 20:41:27] -rw-r--r--. 1 boinc boinc     21440 Nov 20 20:41 stderr.txt
[2025-11-20 20:41:27] HITS file was successfully produced:
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc 917632320 Nov 20 20:37 shared/HITS.pool.root.1
[2025-11-20 20:41:27]  *** Contents of shared directory: ***
[2025-11-20 20:41:27] total 1311288
[2025-11-20 20:41:27] -rw-r--r--. 2 boinc boinc 409746790 Nov 19 19:11 ATLAS.root_0
[2025-11-20 20:41:27] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:11 start_atlas.sh
[2025-11-20 20:41:27] -rw-r--r--. 2 boinc boinc    590103 Nov 19 19:11 input.tar.gz
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc 917632320 Nov 20 20:37 HITS.pool.root.1
[2025-11-20 20:41:27] -rw-------. 1 boinc boinc  14766080 Nov 20 20:41 result.tar.gz
20:41:29 (22789): run_atlas exited; CPU time 338977.805128
20:41:29 (22789): called boinc_finish(0)

</stderr_txt>
]]>

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