Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:05:41 (19058): wrapper (7.7.26015): starting
21:05:41 (19058): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:05:41] Arguments: --nthreads 8
[2025-11-21 21:05:41] Threads: 8
[2025-11-21 21:05:41] Checking for CVMFS
[2025-11-21 21:05:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:05:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:05:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:05:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:05:42] 2.11.2.0 7908 80914 118460 153141 3 181 18912277 25165824 4147 130560 3 24138158 99.895 12619095 2013 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 21:05:42] CVMFS is ok
[2025-11-21 21:05:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:05:42] Checking for apptainer binary...
[2025-11-21 21:05:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:05:42] Running /usr/bin/apptainer --version
[2025-11-21 21:05:42] apptainer version 1.3.2-1.el7
[2025-11-21 21:05:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:05:44] cg-vwn301.simple-grid.lan
[2025-11-21 21:05:44] apptainer works
[2025-11-21 21:05:44] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:05:44] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:05:44] Starting ATLAS job with PandaID=6891569382
[2025-11-21 21:05:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 22:38:08]  *** The last 200 lines of the pilot log: ***
[2025-11-22 22:38:08] 2025-11-22 21:37:20,270 | INFO     | time since job start (91870s) is within the limit (172800.0s)
[2025-11-22 22:38:08] 2025-11-22 21:37:20,387 | INFO     | monitor loop #6123: job 0:6891569382 is in state 'finished'
[2025-11-22 22:38:08] 2025-11-22 21:37:20,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:38:08] 2025-11-22 21:37:22,277 | INFO     | time since job start (91872s) is within the limit (172800.0s)
[2025-11-22 22:38:08] 2025-11-22 21:37:22,900 | INFO     | monitor loop #6124: job 0:6891569382 is in state 'finished'
[2025-11-22 22:38:08] 2025-11-22 21:37:22,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:38:08] 2025-11-22 21:37:24,286 | INFO     | time since job start (91874s) is within the limit (172800.0s)
[2025-11-22 22:38:08] 2025-11-22 21:37:25,406 | INFO     | monitor loop #6125: job 0:6891569382 is in state 'finished'
[2025-11-22 22:38:08] 2025-11-22 21:37:25,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:38:08] 2025-11-22 21:37:26,293 | INFO     | time since job start (91876s) is within the limit (172800.0s)
[2025-11-22 22:38:08] 2025-11-22 21:37:27,912 | INFO     | monitor loop #6126: job 0:6891569382 is in state 'finished'
[2025-11-22 22:38:08] 2025-11-22 21:37:27,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:38:08] 2025-11-22 21:37:28,300 | INFO     | time since job start (91878s) is within the limit (172800.0s)
[2025-11-22 22:38:08] 2025-11-22 21:37:29,503 | INFO     | PID=22819 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 22:38:08] 2025-11-22 21:37:29,503 | INFO     | .. there are 9 such processes running
[2025-11-22 22:38:08] 2025-11-22 21:37:30,005 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 22:38:08] 2025-11-22 21:37:30,006 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-22 22:38:08] 2025-11-22 21:37:30,008 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891569382/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 22:38:08] 2025-11-22 21:37:30,008 | INFO     | extracted standard info from prmon json
[2025-11-22 22:38:08] 2025-11-22 21:37:30,009 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 22:38:08] 2025-11-22 21:37:30,009 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 22:38:08] 2025-11-22 21:37:30,038 | INFO     | fitting pss+swap vs Time
[2025-11-22 22:38:08] 2025-11-22 21:37:30,041 | INFO     | sum of square deviations: 1054925215975.1034
[2025-11-22 22:38:08] 2025-11-22 21:37:30,125 | INFO     | sum of deviations: 2765656050902.0244
[2025-11-22 22:38:08] 2025-11-22 21:37:30,126 | INFO     | mean x: 1763801471.831117
[2025-11-22 22:38:08] 2025-11-22 21:37:30,126 | INFO     | mean y: 2854919.157579787
[2025-11-22 22:38:08] 2025-11-22 21:37:30,126 | INFO     | intersect: -4621234200.421063
[2025-11-22 22:38:08] 2025-11-22 21:37:30,128 | INFO     | chi2: 15.969941657473164
[2025-11-22 22:38:08] 2025-11-22 21:37:30,130 | INFO     | sum of square deviations: 1044439564846.2145
[2025-11-22 22:38:08] 2025-11-22 21:37:30,193 | INFO     | sum of deviations: 3253766330146.2354
[2025-11-22 22:38:08] 2025-11-22 21:37:30,193 | INFO     | mean x: 1763801319.335557
[2025-11-22 22:38:08] 2025-11-22 21:37:30,194 | INFO     | mean y: 2862016.731154103
[2025-11-22 22:38:08] 2025-11-22 21:37:30,194 | INFO     | intersect: -5491948347.68334
[2025-11-22 22:38:08] 2025-11-22 21:37:30,195 | INFO     | chi2: 12.863837508328078
[2025-11-22 22:38:08] 2025-11-22 21:37:30,196 | INFO     | current chi2=12.863837508328078 (change=19.449690022452764 %)
[2025-11-22 22:38:08] 2025-11-22 21:37:30,196 | INFO     | right removable region: 1498
[2025-11-22 22:38:08] 2025-11-22 21:37:30,198 | INFO     | sum of square deviations: 1044438343626.2157
[2025-11-22 22:38:08] 2025-11-22 21:37:30,265 | INFO     | sum of deviations: 2282667490278.1987
[2025-11-22 22:38:08] 2025-11-22 21:37:30,265 | INFO     | mean x: 1763801624.335557
[2025-11-22 22:38:08] 2025-11-22 21:37:30,265 | INFO     | mean y: 2861940.2401601067
[2025-11-22 22:38:08] 2025-11-22 21:37:30,265 | INFO     | intersect: -3852006709.2505045
[2025-11-22 22:38:08] 2025-11-22 21:37:30,267 | INFO     | chi2: 13.275163722798675
[2025-11-22 22:38:08] 2025-11-22 21:37:30,267 | INFO     | current chi2=13.275163722798675 (change=16.8740624885969 %)
[2025-11-22 22:38:08] 2025-11-22 21:37:30,268 | INFO     | left removable region: 10
[2025-11-22 22:38:08] 2025-11-22 21:37:30,270 | INFO     | sum of square deviations: 1021614148805.2003
[2025-11-22 22:38:08] 2025-11-22 21:37:30,331 | INFO     | sum of deviations: 2712336588883.3433
[2025-11-22 22:38:08] 2025-11-22 21:37:30,331 | INFO     | mean x: 1763801593.842742
[2025-11-22 22:38:08] 2025-11-22 21:37:30,331 | INFO     | mean y: 2873093.749327957
[2025-11-22 22:38:08] 2025-11-22 21:37:30,331 | INFO     | intersect: -4679935581.233732
[2025-11-22 22:38:08] 2025-11-22 21:37:30,333 | INFO     | chi2: 9.154132519441232
[2025-11-22 22:38:08] 2025-11-22 21:37:30,333 | INFO     | current memory leak: 2.65 B/s (using 1488 data points, chi2=9.15)
[2025-11-22 22:38:08] 2025-11-22 21:37:30,336 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-22 22:38:08] 2025-11-22 21:37:30,336 | INFO     | ..............................
[2025-11-22 22:38:08] 2025-11-22 21:37:30,336 | INFO     | . Timing measurements:
[2025-11-22 22:38:08] 2025-11-22 21:37:30,336 | INFO     | . get job = 0 s
[2025-11-22 22:38:08] 2025-11-22 21:37:30,336 | INFO     | . initial setup = 2 s
[2025-11-22 22:38:08] 2025-11-22 21:37:30,336 | INFO     | . payload setup = 12 s
[2025-11-22 22:38:08] 2025-11-22 21:37:30,336 | INFO     | . stage-in = 0 s
[2025-11-22 22:38:08] 2025-11-22 21:37:30,337 | INFO     | . payload execution = 91742 s
[2025-11-22 22:38:08] 2025-11-22 21:37:30,337 | INFO     | . stage-out = 6 s
[2025-11-22 22:38:08] 2025-11-22 21:37:30,337 | INFO     | . log creation = 2 s
[2025-11-22 22:38:08] 2025-11-22 21:37:30,337 | INFO     | ..............................
[2025-11-22 22:38:08] 2025-11-22 21:37:30,475 | INFO     | 
[2025-11-22 22:38:08] 2025-11-22 21:37:30,475 | INFO     | job summary report
[2025-11-22 22:38:08] 2025-11-22 21:37:30,475 | INFO     | --------------------------------------------------
[2025-11-22 22:38:08] 2025-11-22 21:37:30,475 | INFO     | PanDA job id: 6891569382
[2025-11-22 22:38:08] 2025-11-22 21:37:30,475 | INFO     | task id: 47493068
[2025-11-22 22:38:08] 2025-11-22 21:37:30,475 | INFO     | errors: (none)
[2025-11-22 22:38:08] 2025-11-22 21:37:30,475 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 22:38:08] 2025-11-22 21:37:30,475 | INFO     | pilot state: finished 
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | transexitcode: 0
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | exeerrorcode: 0
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | exeerrordiag: 
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | exitcode: 0
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | exitmsg: OK
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | cpuconsumptiontime: 343192 s
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | nevents: 1000
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | neventsw: 0
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | pid: 29351
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | pgrp: 29351
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | corecount: 8
[2025-11-22 22:38:08] 2025-11-22 21:37:30,476 | INFO     | event service: False
[2025-11-22 22:38:08] 2025-11-22 21:37:30,477 | INFO     | sizes: {0: 2298619, 1: 2298818, 9: 2299080, 12: 2299108, 91759: 2362144, 91767: 2371138, 91768: 2371322, 91859: 2371346}
[2025-11-22 22:38:08] 2025-11-22 21:37:30,477 | INFO     | --------------------------------------------------
[2025-11-22 22:38:08] 2025-11-22 21:37:30,477 | INFO     | 
[2025-11-22 22:38:08] 2025-11-22 21:37:30,477 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-22 22:38:08] 2025-11-22 21:37:30,505 | INFO     | time since job start (91880s) is within the limit (172800.0s)
[2025-11-22 22:38:08] 2025-11-22 21:37:31,087 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,087 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,087 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,087 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,087 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,087 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,088 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,088 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,088 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,089 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,089 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,089 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 22:38:08] 2025-11-22 21:37:31,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,089 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 22:38:08] 2025-11-22 21:37:31,089 | INFO     | job 6891569382 has completed (purged errors)
[2025-11-22 22:38:08] 2025-11-22 21:37:31,089 | INFO     | overall cleanup function is called
[2025-11-22 22:38:08] 2025-11-22 21:37:32,123 | INFO     | --- collectZombieJob: --- 10, [29351]
[2025-11-22 22:38:08] 2025-11-22 21:37:32,124 | INFO     | zombie collector waiting for pid 29351
[2025-11-22 22:38:08] 2025-11-22 21:37:32,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 22:38:08] 2025-11-22 21:37:32,124 | INFO     | collected zombie processes
[2025-11-22 22:38:08] 2025-11-22 21:37:32,124 | INFO     | will attempt to kill all subprocesses of pid=29351
[2025-11-22 22:38:08] 2025-11-22 21:37:32,270 | INFO     | process IDs to be killed: [29351] (in reverse order)
[2025-11-22 22:38:08] 2025-11-22 21:37:33,035 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 22:38:08] 2025-11-22 21:37:33,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 22:38:08] 2025-11-22 21:37:33,039 | INFO     | did not find any defunct processes belonging to 29351
[2025-11-22 22:38:08] 2025-11-22 21:37:33,043 | INFO     | did not find any defunct processes belonging to 29351
[2025-11-22 22:38:08] 2025-11-22 21:37:33,075 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 22:38:08] 2025-11-22 21:37:33,075 | INFO     | ready for new job
[2025-11-22 22:38:08] 2025-11-22 21:37:33,076 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 22:38:08] 2025-11-22 21:37:33,083 | INFO     | ***************************************
[2025-11-22 22:38:08] 2025-11-22 21:37:33,083 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 22:38:08] 2025-11-22 21:37:33,083 | INFO     | ***************************************
[2025-11-22 22:38:08] 2025-11-22 21:37:33,083 | INFO     | 
[2025-11-22 22:38:08] 2025-11-22 21:37:33,084 | INFO     | pilot is running in a VM
[2025-11-22 22:38:08] 2025-11-22 21:37:33,084 | INFO     | architecture information:
[2025-11-22 22:38:08] 2025-11-22 21:37:33,098 | INFO     | executing command: cat /etc/os-release
[2025-11-22 22:38:08] 2025-11-22 21:37:33,330 | INFO     | cat /etc/os-release:
[2025-11-22 22:38:08] NAME="CentOS Linux"
[2025-11-22 22:38:08] VERSION="7 (Core)"
[2025-11-22 22:38:08] ID="centos"
[2025-11-22 22:38:08] ID_LIKE="rhel fedora"
[2025-11-22 22:38:08] VERSION_ID="7"
[2025-11-22 22:38:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 22:38:08] ANSI_COLOR="0;31"
[2025-11-22 22:38:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 22:38:08] HOME_URL="https://www.centos.org/"
[2025-11-22 22:38:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 22:38:08] 
[2025-11-22 22:38:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 22:38:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 22:38:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 22:38:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 22:38:08] 
[2025-11-22 22:38:08] 2025-11-22 21:37:33,331 | INFO     | ***************************************
[2025-11-22 22:38:08] 2025-11-22 21:37:33,836 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-22 22:38:08] 2025-11-22 21:37:34,015 | INFO     | sufficient remaining disk space (495128150016 B)
[2025-11-22 22:38:08] 2025-11-22 21:37:34,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 22:38:08] 2025-11-22 21:37:34,015 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 22:38:08] 2025-11-22 21:37:34,015 | INFO     | update_server=False
[2025-11-22 22:38:08] 2025-11-22 21:37:34,015 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 22:38:08] 2025-11-22 21:37:34,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:38:08] 2025-11-22 21:37:34,017 | INFO     | aborting loop
[2025-11-22 22:38:08] 2025-11-22 21:37:34,056 | INFO     | all data control threads have been joined
[2025-11-22 22:38:08] 2025-11-22 21:37:34,245 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 22:38:08] 2025-11-22 21:37:35,005 | INFO     | all job control threads have been joined
[2025-11-22 22:38:08] 2025-11-22 21:37:35,022 | INFO     | [job] retrieve thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:35,025 | INFO     | [job] job monitor thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:35,062 | INFO     | [data] control thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:35,097 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:35,168 | INFO     | [data] copytool_in thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:35,220 | INFO     | all payload control threads have been joined
[2025-11-22 22:38:08] 2025-11-22 21:37:35,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:38:08] 2025-11-22 21:37:35,550 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 22:38:08] 2025-11-22 21:37:35,694 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:35,839 | INFO     | [payload] validate_post thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:36,011 | INFO     | [job] control thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:36,073 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:36,094 | INFO     | [job] validate thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:36,122 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:36,226 | INFO     | [payload] control thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:36,255 | INFO     | [data] copytool_out thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:36,280 | INFO     | [payload] failed_post thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:36,486 | INFO     | [job] queue monitor thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:39,562 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 22:38:08] 2025-11-22 21:37:50,484 | INFO     | [monitor] cgroup control has ended
[2025-11-22 22:38:08] 2025-11-22 21:37:51,192 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140350730532672)>', '<ExcThread(monitor, started 140350001772288)>']
[2025-11-22 22:38:08] 2025-11-22 21:37:56,217 | INFO     | all workflow threads have been joined
[2025-11-22 22:38:08] 2025-11-22 21:37:56,218 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 22:38:08] 2025-11-22 21:37:56,218 | INFO     | traces error code: 0
[2025-11-22 22:38:08] 2025-11-22 21:37:56,218 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 22:38:08] 2025-11-22 21:38:03,702 | INFO     | PID=22819 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 22:38:08] 2025-11-22 21:38:03,703 | INFO     | .. there are 9 such processes running
[2025-11-22 22:38:08] 2025-11-22 21:38:03,704 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 22:38:08] 2025-11-22 21:38:03,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 22:38:08] 2025-11-22 21:38:03,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 22:38:08] 2025-11-22 21:38:03,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 22:38:08] 2025-11-22 21:38:03,704 | INFO     | [monitor] control thread has ended
[2025-11-22 22:38:08] 2025-11-22 21:38:03,989 [wrapper] ==== pilot stdout END ====
[2025-11-22 22:38:08] 2025-11-22 21:38:04,094 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 22:38:08] 2025-11-22 21:38:04,217 [wrapper] pilotpid: 22819
[2025-11-22 22:38:08] 2025-11-22 21:38:04,328 [wrapper] Pilot exit status: 0
[2025-11-22 22:38:08] 2025-11-22 21:38:04,621 [wrapper] pandaids: 6891569382
[2025-11-22 22:38:08] 2025-11-22 21:38:05,823 [wrapper] cleanup supervisor_pilot  8765 22820
[2025-11-22 22:38:08] 2025-11-22 21:38:05,956 [wrapper] Test setup, not cleaning
[2025-11-22 22:38:08] 2025-11-22 21:38:06,079 [wrapper] apfmon messages muted
[2025-11-22 22:38:08] 2025-11-22 21:38:06,203 [wrapper] ==== wrapper stdout END ====
[2025-11-22 22:38:08] 2025-11-22 21:38:06,313 [wrapper] ==== wrapper stderr END ====
[2025-11-22 22:38:08]  *** Error codes and diagnostics ***
[2025-11-22 22:38:08]     "exeErrorCode": 0,
[2025-11-22 22:38:08]     "exeErrorDiag": "",
[2025-11-22 22:38:08]     "pilotErrorCode": 0,
[2025-11-22 22:38:08]     "pilotErrorDiag": "",
[2025-11-22 22:38:08]  *** Listing of results directory ***
[2025-11-22 22:38:08] total 1341896
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-22 22:38:08] -rwx------. 1 boinc boinc     36292 Nov 18 16:34 runpilot2-wrapper.sh
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc       100 Nov 21 21:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 22:38:08] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 21:05 run_atlas
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc       105 Nov 21 21:05 job.xml
[2025-11-22 22:38:08] -rw-r--r--. 2 boinc boinc 413166168 Nov 21 21:05 EVNT.47493065._000198.pool.root.1
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc      6390 Nov 21 21:05 init_data.xml
[2025-11-22 22:38:08] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:05 start_atlas.sh
[2025-11-22 22:38:08] drwxrwx--x. 2 boinc boinc        68 Nov 21 21:05 shared
[2025-11-22 22:38:08] -rw-r--r--. 2 boinc boinc    590099 Nov 21 21:05 input.tar.gz
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc         0 Nov 21 21:05 boinc_lockfile
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc      2770 Nov 21 21:05 pandaJob.out
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc    989798 Nov 21 21:06 agis_schedconf.cvmfs.json
[2025-11-22 22:38:08] drwx------. 5 boinc boinc      4096 Nov 21 21:06 pilot3
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc       533 Nov 22 22:11 boinc_task_state.xml
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc 927392555 Nov 22 22:34 HITS.47493068._001971.pool.root.1
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc      1033 Nov 22 22:35 memory_monitor_summary.json
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc   1526164 Nov 22 22:35 agis_ddmendpoints.agis.ALL.json
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc   2565036 Nov 22 22:35 log.47493068._001971.job.log.tgz.1
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc      7941 Nov 22 22:37 heartbeat.json
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc        29 Nov 22 22:37 wrapper_checkpoint.txt
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc      8192 Nov 22 22:37 boinc_mmap_file
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc       820 Nov 22 22:38 pilotlog.txt
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc        95 Nov 22 22:38 pilot_heartbeat.json
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc  12252180 Nov 22 22:38 log.47493068._001971.job.log.1
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc       353 Nov 22 22:38 output.list
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc       620 Nov 22 22:38 runtime_log
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc  14837760 Nov 22 22:38 result.tar.gz
[2025-11-22 22:38:08] -rw-------. 1 boinc boinc       662 Nov 22 22:38 XvKKDmhtcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJXFKDmMoKhBo.diag
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc      8703 Nov 22 22:38 runtime_log.err
[2025-11-22 22:38:08] -rw-r--r--. 1 boinc boinc     21468 Nov 22 22:38 stderr.txt
[2025-11-22 22:38:09] HITS file was successfully produced:
[2025-11-22 22:38:09] -rw-------. 1 boinc boinc 927392555 Nov 22 22:34 shared/HITS.pool.root.1
[2025-11-22 22:38:09]  *** Contents of shared directory: ***
[2025-11-22 22:38:09] total 1324232
[2025-11-22 22:38:09] -rw-r--r--. 2 boinc boinc 413166168 Nov 21 21:05 ATLAS.root_0
[2025-11-22 22:38:09] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:05 start_atlas.sh
[2025-11-22 22:38:09] -rw-r--r--. 2 boinc boinc    590099 Nov 21 21:05 input.tar.gz
[2025-11-22 22:38:09] -rw-------. 1 boinc boinc 927392555 Nov 22 22:34 HITS.pool.root.1
[2025-11-22 22:38:09] -rw-------. 1 boinc boinc  14837760 Nov 22 22:38 result.tar.gz
22:38:10 (19058): run_atlas exited; CPU time 343706.966325
22:38:10 (19058): called boinc_finish(0)

</stderr_txt>
]]>

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