Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:55:05 (5521): wrapper (7.7.26015): starting
18:55:05 (5521): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:55:05] Arguments: --nthreads 8
[2025-11-19 18:55:05] Threads: 8
[2025-11-19 18:55:05] Checking for CVMFS
[2025-11-19 18:55:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:55:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:55:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:55:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:55:08] 2.11.2.0 32728 275443 144644 153052 1 236 16159217 25165824 4632 130560 2 135766846 99.887 74242377 3116 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:55:08] CVMFS is ok
[2025-11-19 18:55:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:55:08] Checking for apptainer binary...
[2025-11-19 18:55:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:55:08] Running /usr/bin/apptainer --version
[2025-11-19 18:55:08] apptainer version 1.3.2-1.el7
[2025-11-19 18:55:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:55:30] cg-vwn337.simple-grid.lan
[2025-11-19 18:55:30] apptainer works
[2025-11-19 18:55:30] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:55:30] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:55:30] Starting ATLAS job with PandaID=6891567952
[2025-11-19 18:55:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:05:15]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:05:15] 2025-11-20 20:04:12,887 | INFO     | extracted standard info from prmon json
[2025-11-20 21:05:15] 2025-11-20 20:04:12,888 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 21:05:15] 2025-11-20 20:04:12,888 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 21:05:15] 2025-11-20 20:04:12,920 | INFO     | fitting pss+swap vs Time
[2025-11-20 21:05:15] 2025-11-20 20:04:12,923 | INFO     | sum of square deviations: 1108408860804.6943
[2025-11-20 21:05:15] 2025-11-20 20:04:13,034 | INFO     | sum of deviations: 4323329648683.808
[2025-11-20 21:05:15] 2025-11-20 20:04:13,034 | INFO     | mean x: 1763622308.3518639
[2025-11-20 21:05:15] 2025-11-20 20:04:13,034 | INFO     | mean y: 2868517.1007194244
[2025-11-20 21:05:15] 2025-11-20 20:04:13,035 | INFO     | intersect: -6876109885.54604
[2025-11-20 21:05:15] 2025-11-20 20:04:13,037 | INFO     | chi2: 16.424891151713144
[2025-11-20 21:05:15] 2025-11-20 20:04:13,039 | INFO     | sum of square deviations: 1097571129875.5295
[2025-11-20 21:05:15] 2025-11-20 20:04:13,131 | INFO     | time since job start (93892s) is within the limit (172800.0s)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,135 | INFO     | sum of deviations: 4828852477454.69
[2025-11-20 21:05:15] 2025-11-20 20:04:13,135 | INFO     | mean x: 1763622155.8562992
[2025-11-20 21:05:15] 2025-11-20 20:04:13,135 | INFO     | mean y: 2875629.427821522
[2025-11-20 21:05:15] 2025-11-20 20:04:13,136 | INFO     | intersect: -7756321915.761312
[2025-11-20 21:05:15] 2025-11-20 20:04:13,138 | INFO     | chi2: 13.35998599367463
[2025-11-20 21:05:15] 2025-11-20 20:04:13,138 | INFO     | current chi2=13.35998599367463 (change=18.660124622614855 %)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,138 | INFO     | right removable region: 1523
[2025-11-20 21:05:15] 2025-11-20 20:04:13,140 | INFO     | sum of square deviations: 1097569869005.531
[2025-11-20 21:05:15] 2025-11-20 20:04:13,244 | INFO     | sum of deviations: 3655730558031.714
[2025-11-20 21:05:15] 2025-11-20 20:04:13,245 | INFO     | mean x: 1763622460.8562992
[2025-11-20 21:05:15] 2025-11-20 20:04:13,245 | INFO     | mean y: 2877910.222440945
[2025-11-20 21:05:15] 2025-11-20 20:04:13,245 | INFO     | intersect: -5871307146.28349
[2025-11-20 21:05:15] 2025-11-20 20:04:13,247 | INFO     | chi2: 11.402330679332573
[2025-11-20 21:05:15] 2025-11-20 20:04:13,247 | INFO     | current chi2=11.402330679332573 (change=30.578957424973307 %)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,249 | INFO     | sum of square deviations: 1086801762256.2922
[2025-11-20 21:05:15] 2025-11-20 20:04:13,322 | INFO     | sum of deviations: 3112307343081.445
[2025-11-20 21:05:15] 2025-11-20 20:04:13,322 | INFO     | mean x: 1763622613.3607635
[2025-11-20 21:05:15] 2025-11-20 20:04:13,322 | INFO     | mean y: 2885604.685319289
[2025-11-20 21:05:15] 2025-11-20 20:04:13,323 | INFO     | intersect: -5047654245.923405
[2025-11-20 21:05:15] 2025-11-20 20:04:13,325 | INFO     | chi2: 8.155698776250432
[2025-11-20 21:05:15] 2025-11-20 20:04:13,325 | INFO     | current chi2=8.155698776250432 (change=28.473405958720893 %)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,327 | INFO     | sum of square deviations: 1076104678393.4222
[2025-11-20 21:05:15] 2025-11-20 20:04:13,399 | INFO     | sum of deviations: 2945352996358.689
[2025-11-20 21:05:15] 2025-11-20 20:04:13,399 | INFO     | mean x: 1763622765.8626156
[2025-11-20 21:05:15] 2025-11-20 20:04:13,400 | INFO     | mean y: 2887983.00330251
[2025-11-20 21:05:15] 2025-11-20 20:04:13,400 | INFO     | intersect: -4824236833.176295
[2025-11-20 21:05:15] 2025-11-20 20:04:13,402 | INFO     | chi2: 7.844255886084733
[2025-11-20 21:05:15] 2025-11-20 20:04:13,402 | INFO     | current chi2=7.844255886084733 (change=3.8187149710902424 %)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,402 | INFO     | left removable region: 30
[2025-11-20 21:05:15] 2025-11-20 20:04:13,404 | INFO     | sum of square deviations: 1031945462270.0555
[2025-11-20 21:05:15] 2025-11-20 20:04:13,482 | INFO     | sum of deviations: 3325644531452.152
[2025-11-20 21:05:15] 2025-11-20 20:04:13,483 | INFO     | mean x: 1763623040.3650367
[2025-11-20 21:05:15] 2025-11-20 20:04:13,483 | INFO     | mean y: 2900335.5391828534
[2025-11-20 21:05:15] 2025-11-20 20:04:13,483 | INFO     | intersect: -5680717194.820294
[2025-11-20 21:05:15] 2025-11-20 20:04:13,485 | INFO     | chi2: 3.889995959213627
[2025-11-20 21:05:15] 2025-11-20 20:04:13,486 | INFO     | current memory leak: 3.22 B/s (using 1493 data points, chi2=3.89)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,488 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,489 | INFO     | ..............................
[2025-11-20 21:05:15] 2025-11-20 20:04:13,489 | INFO     | . Timing measurements:
[2025-11-20 21:05:15] 2025-11-20 20:04:13,489 | INFO     | . get job = 0 s
[2025-11-20 21:05:15] 2025-11-20 20:04:13,489 | INFO     | . initial setup = 6 s
[2025-11-20 21:05:15] 2025-11-20 20:04:13,489 | INFO     | . payload setup = 163 s
[2025-11-20 21:05:15] 2025-11-20 20:04:13,489 | INFO     | . stage-in = 0 s
[2025-11-20 21:05:15] 2025-11-20 20:04:13,489 | INFO     | . payload execution = 93413 s
[2025-11-20 21:05:15] 2025-11-20 20:04:13,490 | INFO     | . stage-out = 6 s
[2025-11-20 21:05:15] 2025-11-20 20:04:13,490 | INFO     | . log creation = 2 s
[2025-11-20 21:05:15] 2025-11-20 20:04:13,490 | INFO     | ..............................
[2025-11-20 21:05:15] 2025-11-20 20:04:13,637 | INFO     | 
[2025-11-20 21:05:15] 2025-11-20 20:04:13,637 | INFO     | job summary report
[2025-11-20 21:05:15] 2025-11-20 20:04:13,637 | INFO     | --------------------------------------------------
[2025-11-20 21:05:15] 2025-11-20 20:04:13,637 | INFO     | PanDA job id: 6891567952
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | task id: 47493068
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | errors: (none)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | pilot state: finished 
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | transexitcode: 0
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | exeerrorcode: 0
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | exeerrordiag: 
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | exitcode: 0
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | exitmsg: OK
[2025-11-20 21:05:15] 2025-11-20 20:04:13,638 | INFO     | cpuconsumptiontime: 345242 s
[2025-11-20 21:05:15] 2025-11-20 20:04:13,639 | INFO     | nevents: 1000
[2025-11-20 21:05:15] 2025-11-20 20:04:13,639 | INFO     | neventsw: 0
[2025-11-20 21:05:15] 2025-11-20 20:04:13,639 | INFO     | pid: 15910
[2025-11-20 21:05:15] 2025-11-20 20:04:13,639 | INFO     | pgrp: 15910
[2025-11-20 21:05:15] 2025-11-20 20:04:13,639 | INFO     | corecount: 8
[2025-11-20 21:05:15] 2025-11-20 20:04:13,639 | INFO     | event service: False
[2025-11-20 21:05:15] 2025-11-20 20:04:13,639 | INFO     | sizes: {0: 2297029, 1: 2297228, 12: 2297228, 23: 2297256, 34: 2297284, 44: 2297312, 55: 2297468, 66: 2297496, 77: 2297524, 87: 2297580, 98: 2298178, 109: 2298178, 
[2025-11-20 21:05:15] 2025-11-20 20:04:13,639 | INFO     | --------------------------------------------------
[2025-11-20 21:05:15] 2025-11-20 20:04:13,639 | INFO     | 
[2025-11-20 21:05:15] 2025-11-20 20:04:13,640 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-20 21:05:15] 2025-11-20 20:04:13,884 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,885 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,885 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,885 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,885 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,885 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,886 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,886 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,886 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,886 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,886 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,886 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 21:05:15] 2025-11-20 20:04:13,887 | INFO     | job 6891567952 has completed (purged errors)
[2025-11-20 21:05:15] 2025-11-20 20:04:13,887 | INFO     | overall cleanup function is called
[2025-11-20 21:05:15] 2025-11-20 20:04:14,262 | INFO     | PID=9328 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 21:05:15] 2025-11-20 20:04:14,262 | INFO     | .. there are 9 such processes running
[2025-11-20 21:05:15] 2025-11-20 20:04:14,910 | INFO     | --- collectZombieJob: --- 10, [15910]
[2025-11-20 21:05:15] 2025-11-20 20:04:14,910 | INFO     | zombie collector waiting for pid 15910
[2025-11-20 21:05:15] 2025-11-20 20:04:14,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 21:05:15] 2025-11-20 20:04:14,910 | INFO     | collected zombie processes
[2025-11-20 21:05:15] 2025-11-20 20:04:14,910 | INFO     | will attempt to kill all subprocesses of pid=15910
[2025-11-20 21:05:15] 2025-11-20 20:04:15,057 | INFO     | process IDs to be killed: [15910] (in reverse order)
[2025-11-20 21:05:15] 2025-11-20 20:04:15,909 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 21:05:15] 2025-11-20 20:04:15,910 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 21:05:15] 2025-11-20 20:04:15,914 | INFO     | did not find any defunct processes belonging to 15910
[2025-11-20 21:05:15] 2025-11-20 20:04:15,917 | INFO     | did not find any defunct processes belonging to 15910
[2025-11-20 21:05:15] 2025-11-20 20:04:15,964 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 21:05:15] 2025-11-20 20:04:15,964 | INFO     | ready for new job
[2025-11-20 21:05:15] 2025-11-20 20:04:15,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 21:05:15] 2025-11-20 20:04:15,971 | INFO     | ***************************************
[2025-11-20 21:05:15] 2025-11-20 20:04:15,971 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 21:05:15] 2025-11-20 20:04:15,971 | INFO     | ***************************************
[2025-11-20 21:05:15] 2025-11-20 20:04:15,971 | INFO     | 
[2025-11-20 21:05:15] 2025-11-20 20:04:15,972 | INFO     | pilot is running in a VM
[2025-11-20 21:05:15] 2025-11-20 20:04:15,972 | INFO     | architecture information:
[2025-11-20 21:05:15] 2025-11-20 20:04:15,988 | INFO     | executing command: cat /etc/os-release
[2025-11-20 21:05:15] 2025-11-20 20:04:16,198 | INFO     | cat /etc/os-release:
[2025-11-20 21:05:15] NAME="CentOS Linux"
[2025-11-20 21:05:15] VERSION="7 (Core)"
[2025-11-20 21:05:15] ID="centos"
[2025-11-20 21:05:15] ID_LIKE="rhel fedora"
[2025-11-20 21:05:15] VERSION_ID="7"
[2025-11-20 21:05:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 21:05:15] ANSI_COLOR="0;31"
[2025-11-20 21:05:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 21:05:15] HOME_URL="https://www.centos.org/"
[2025-11-20 21:05:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 21:05:15] 
[2025-11-20 21:05:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 21:05:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 21:05:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 21:05:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 21:05:15] 
[2025-11-20 21:05:15] 2025-11-20 20:04:16,199 | INFO     | ***************************************
[2025-11-20 21:05:15] 2025-11-20 20:04:16,703 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-20 21:05:15] 2025-11-20 20:04:16,981 | INFO     | sufficient remaining disk space (494900609024 B)
[2025-11-20 21:05:15] 2025-11-20 20:04:16,982 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 21:05:15] 2025-11-20 20:04:16,982 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 21:05:15] 2025-11-20 20:04:16,982 | INFO     | update_server=False
[2025-11-20 21:05:15] 2025-11-20 20:04:16,982 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 21:05:15] 2025-11-20 20:04:17,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:05:15] 2025-11-20 20:04:17,091 | INFO     | all payload control threads have been joined
[2025-11-20 21:05:15] 2025-11-20 20:04:17,395 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 21:05:15] 2025-11-20 20:04:17,396 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 21:05:15] 2025-11-20 20:04:17,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:05:15] 2025-11-20 20:04:17,396 | INFO     | will abort loop
[2025-11-20 21:05:15] 2025-11-20 20:04:17,800 | INFO     | all job control threads have been joined
[2025-11-20 21:05:15] 2025-11-20 20:04:17,900 | INFO     | all data control threads have been joined
[2025-11-20 21:05:15] 2025-11-20 20:04:17,989 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:18,097 | INFO     | [payload] control thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:18,402 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:18,602 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:18,625 | INFO     | [job] validate thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:18,653 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:05:15] 2025-11-20 20:04:18,679 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:18,807 | INFO     | [job] control thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:18,907 | INFO     | [data] control thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:18,908 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:19,047 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:19,170 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:19,396 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:19,401 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:19,462 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:19,659 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:19,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:05:15] 2025-11-20 20:04:23,974 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:05:15] 2025-11-20 20:04:46,444 | INFO     | PID=9328 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 21:05:15] 2025-11-20 20:04:46,445 | INFO     | .. there are 9 such processes running
[2025-11-20 21:05:15] 2025-11-20 20:04:46,446 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:05:15] 2025-11-20 20:04:46,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:05:15] 2025-11-20 20:04:46,446 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:05:15] 2025-11-20 20:05:04,843 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:05:15] 2025-11-20 20:05:06,630 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159738988352)>', '<ExcThread(monitor, started 140159068661504)>']
[2025-11-20 21:05:15] 2025-11-20 20:05:07,570 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:05:15] 2025-11-20 20:05:07,571 | INFO     | [monitor] control thread has ended
[2025-11-20 21:05:15] 2025-11-20 20:05:11,656 | INFO     | all workflow threads have been joined
[2025-11-20 21:05:15] 2025-11-20 20:05:11,656 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:05:15] 2025-11-20 20:05:11,656 | INFO     | traces error code: 0
[2025-11-20 21:05:15] 2025-11-20 20:05:11,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:05:15] 2025-11-20 20:05:12,030 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:05:15] 2025-11-20 20:05:12,108 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:05:15] 2025-11-20 20:05:12,172 [wrapper] pilotpid: 9328
[2025-11-20 21:05:15] 2025-11-20 20:05:12,268 [wrapper] Pilot exit status: 0
[2025-11-20 21:05:15] 2025-11-20 20:05:12,622 [wrapper] pandaids: 6891567952
[2025-11-20 21:05:15] 2025-11-20 20:05:13,573 [wrapper] cleanup supervisor_pilot 18908 9329
[2025-11-20 21:05:15] 2025-11-20 20:05:13,667 [wrapper] Test setup, not cleaning
[2025-11-20 21:05:15] 2025-11-20 20:05:13,788 [wrapper] apfmon messages muted
[2025-11-20 21:05:15] 2025-11-20 20:05:13,914 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:05:15] 2025-11-20 20:05:14,026 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:05:15]  *** Error codes and diagnostics ***
[2025-11-20 21:05:15]     "exeErrorCode": 0,
[2025-11-20 21:05:15]     "exeErrorDiag": "",
[2025-11-20 21:05:15]     "pilotErrorCode": 0,
[2025-11-20 21:05:15]     "pilotErrorDiag": "",
[2025-11-20 21:05:15]  *** Listing of results directory ***
[2025-11-20 21:05:15] total 1346480
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-20 21:05:15] -rwx------. 1 boinc boinc     36292 Nov 18 16:33 runpilot2-wrapper.sh
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:05:15] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:55 run_atlas
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:55 job.xml
[2025-11-20 21:05:15] -rw-r--r--. 2 boinc boinc 409853314 Nov 19 18:55 EVNT.47493065._000182.pool.root.1
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc      6390 Nov 19 18:55 init_data.xml
[2025-11-20 21:05:15] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:55 start_atlas.sh
[2025-11-20 21:05:15] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:55 shared
[2025-11-20 21:05:15] -rw-r--r--. 2 boinc boinc    590106 Nov 19 18:55 input.tar.gz
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:55 boinc_lockfile
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc      2773 Nov 19 18:55 pandaJob.out
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc    989434 Nov 19 18:59 agis_schedconf.cvmfs.json
[2025-11-20 21:05:15] drwx------. 5 boinc boinc      4096 Nov 19 18:59 pilot3
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc       533 Nov 20 20:46 boinc_task_state.xml
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc 934880173 Nov 20 21:01 HITS.47493068._001815.pool.root.1
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc      1034 Nov 20 21:02 memory_monitor_summary.json
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc   1526164 Nov 20 21:02 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc   2589349 Nov 20 21:02 log.47493068._001815.job.log.tgz.1
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc      8626 Nov 20 21:04 heartbeat.json
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc        95 Nov 20 21:04 pilot_heartbeat.json
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc        29 Nov 20 21:05 wrapper_checkpoint.txt
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc      5069 Nov 20 21:05 pilotlog.txt
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc  12487657 Nov 20 21:05 log.47493068._001815.job.log.1
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc      8192 Nov 20 21:05 boinc_mmap_file
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc       353 Nov 20 21:05 output.list
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc       620 Nov 20 21:05 runtime_log
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc  15093760 Nov 20 21:05 result.tar.gz
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc      8703 Nov 20 21:05 runtime_log.err
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc       662 Nov 20 21:05 CgSMDmYtcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZKFKDmMcxkVm.diag
[2025-11-20 21:05:15] -rw-r--r--. 1 boinc boinc     21035 Nov 20 21:05 stderr.txt
[2025-11-20 21:05:15] HITS file was successfully produced:
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc 934880173 Nov 20 21:01 shared/HITS.pool.root.1
[2025-11-20 21:05:15]  *** Contents of shared directory: ***
[2025-11-20 21:05:15] total 1328556
[2025-11-20 21:05:15] -rw-r--r--. 2 boinc boinc 409853314 Nov 19 18:55 ATLAS.root_0
[2025-11-20 21:05:15] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:55 start_atlas.sh
[2025-11-20 21:05:15] -rw-r--r--. 2 boinc boinc    590106 Nov 19 18:55 input.tar.gz
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc 934880173 Nov 20 21:01 HITS.pool.root.1
[2025-11-20 21:05:15] -rw-------. 1 boinc boinc  15093760 Nov 20 21:05 result.tar.gz
21:05:16 (5521): run_atlas exited; CPU time 345732.065149
21:05:16 (5521): called boinc_finish(0)

</stderr_txt>
]]>

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