Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:32:09 (184773): wrapper (7.7.26015): starting
20:32:09 (184773): wrapper: running run_atlas (--nthreads 4)
[2025-11-19 20:32:09] Arguments: --nthreads 4
[2025-11-19 20:32:09] Threads: 4
[2025-11-19 20:32:09] Checking for CVMFS
[2025-11-19 20:32:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 20:32:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 20:32:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 20:32:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 20:32:10] 2.9.2.0 3072 1259 72188 153055 3 9 26377720 36864001 0 130560 0 488524 99.943 175836 6108 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 20:32:10] CVMFS is ok
[2025-11-19 20:32:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 20:32:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 20:32:10] Further information can be found at the LHC@home message board.
[2025-11-19 20:32:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 20:32:10] Checking for apptainer binary...
[2025-11-19 20:32:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 20:32:10] Running /usr/bin/apptainer --version
[2025-11-19 20:32:10] apptainer version 1.4.1-1.1
[2025-11-19 20:32:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 20:32:10] thA373a
[2025-11-19 20:32:10] apptainer works
[2025-11-19 20:32:10] Set ATHENA_PROC_NUMBER=4
[2025-11-19 20:32:10] Set ATHENA_CORE_NUMBER=4
[2025-11-19 20:32:10] Starting ATLAS job with PandaID=6891567409
[2025-11-19 20:32:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 03:27:54]  *** The last 200 lines of the pilot log: ***
[2025-11-20 03:27:54] 2025-11-20 02:27:12,196 | INFO     | will attempt to kill all subprocesses of pid=195158
[2025-11-20 03:27:54] 2025-11-20 02:27:12,242 | INFO     | process IDs to be killed: [195158] (in reverse order)
[2025-11-20 03:27:54] 2025-11-20 02:27:12,277 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 03:27:54] 2025-11-20 02:27:12,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 03:27:54] 2025-11-20 02:27:12,279 | INFO     | did not find any defunct processes belonging to 195158
[2025-11-20 03:27:54] 2025-11-20 02:27:12,280 | INFO     | did not find any defunct processes belonging to 195158
[2025-11-20 03:27:54] 2025-11-20 02:27:12,281 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 03:27:54] 2025-11-20 02:27:12,281 | INFO     | ready for new job
[2025-11-20 03:27:54] 2025-11-20 02:27:12,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 03:27:54] 2025-11-20 02:27:12,283 | INFO     | ***************************************
[2025-11-20 03:27:54] 2025-11-20 02:27:12,283 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 03:27:54] 2025-11-20 02:27:12,283 | INFO     | ***************************************
[2025-11-20 03:27:54] 2025-11-20 02:27:12,283 | INFO     | 
[2025-11-20 03:27:54] 2025-11-20 02:27:12,283 | INFO     | architecture information:
[2025-11-20 03:27:54] 2025-11-20 02:27:12,284 | INFO     | executing command: cat /etc/os-release
[2025-11-20 03:27:54] 2025-11-20 02:27:12,298 | INFO     | cat /etc/os-release:
[2025-11-20 03:27:54] NAME="CentOS Linux"
[2025-11-20 03:27:54] VERSION="7 (Core)"
[2025-11-20 03:27:54] ID="centos"
[2025-11-20 03:27:54] ID_LIKE="rhel fedora"
[2025-11-20 03:27:54] VERSION_ID="7"
[2025-11-20 03:27:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 03:27:54] ANSI_COLOR="0;31"
[2025-11-20 03:27:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 03:27:54] HOME_URL="https://www.centos.org/"
[2025-11-20 03:27:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 03:27:54] 
[2025-11-20 03:27:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 03:27:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 03:27:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 03:27:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 03:27:54] 
[2025-11-20 03:27:54] 2025-11-20 02:27:12,298 | INFO     | ***************************************
[2025-11-20 03:27:54] 2025-11-20 02:27:12,801 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 03:27:54] 2025-11-20 02:27:12,819 | INFO     | sufficient remaining disk space (330407346176 B)
[2025-11-20 03:27:54] 2025-11-20 02:27:12,819 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 03:27:54] 2025-11-20 02:27:12,819 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 03:27:54] 2025-11-20 02:27:12,819 | INFO     | update_server=False
[2025-11-20 03:27:54] 2025-11-20 02:27:12,819 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 03:27:54] 2025-11-20 02:27:12,820 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 03:27:54] 2025-11-20 02:27:12,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 03:27:54] 2025-11-20 02:27:12,918 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 03:27:54] 2025-11-20 02:27:12,918 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 03:27:54] 2025-11-20 02:27:12,918 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 03:27:54] 2025-11-20 02:27:12,918 | INFO     | will abort loop
[2025-11-20 03:27:54] 2025-11-20 02:27:13,614 | INFO     | all data control threads have been joined
[2025-11-20 03:27:54] 2025-11-20 02:27:13,825 | INFO     | [job] queue monitor thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:13,825 | INFO     | [job] retrieve thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:13,917 | INFO     | all job control threads have been joined
[2025-11-20 03:27:54] 2025-11-20 02:27:13,924 | INFO     | [job] job monitor thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:13,934 | INFO     | all payload control threads have been joined
[2025-11-20 03:27:54] 2025-11-20 02:27:14,138 | INFO     | [data] copytool_in thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:14,327 | INFO     | [payload] failed_post thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:14,581 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:14,612 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:14,620 | INFO     | [data] control thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:14,679 | INFO     | [job] validate thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:14,819 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:14,825 | INFO     | [data] copytool_out thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:14,922 | INFO     | [job] control thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:14,940 | INFO     | [payload] control thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:15,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 03:27:54] 2025-11-20 02:27:15,361 | INFO     | [payload] validate_post thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:19,214 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:23,589 | INFO     | job.realtimelogging is not enabled
[2025-11-20 03:27:54] 2025-11-20 02:27:24,595 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 03:27:54] 2025-11-20 02:27:43,042 | INFO     | PID=188559 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 03:27:54] 2025-11-20 02:27:43,043 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 03:27:54] 2025-11-20 02:27:43,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 03:27:54] 2025-11-20 02:27:43,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 03:27:54] 2025-11-20 02:27:47,206 | INFO     | [monitor] cgroup control has ended
[2025-11-20 03:27:54] 2025-11-20 02:27:48,930 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139951217440576)>', '<ExcThread(monitor, started 139950292985600)>']
[2025-11-20 03:27:54] 2025-11-20 02:27:49,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 03:27:54] 2025-11-20 02:27:49,075 | INFO     | [monitor] control thread has ended
[2025-11-20 03:27:54] 2025-11-20 02:27:53,956 | INFO     | all workflow threads have been joined
[2025-11-20 03:27:54] 2025-11-20 02:27:53,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 03:27:54] 2025-11-20 02:27:53,956 | INFO     | traces error code: 0
[2025-11-20 03:27:54] 2025-11-20 02:27:53,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 03:27:54] 2025-11-20 02:27:54,034 [wrapper] ==== pilot stdout END ====
[2025-11-20 03:27:54] 2025-11-20 02:27:54,039 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 03:27:54] 2025-11-20 02:27:54,043 [wrapper] pilotpid: 188559
[2025-11-20 03:27:54] 2025-11-20 02:27:54,047 [wrapper] Pilot exit status: 0
[2025-11-20 03:27:54] 2025-11-20 02:27:54,058 [wrapper] pandaids: 6891567409
[2025-11-20 03:27:54] 2025-11-20 02:27:54,081 [wrapper] cleanup supervisor_pilot  241851 188560
[2025-11-20 03:27:54] 2025-11-20 02:27:54,085 [wrapper] Test setup, not cleaning
[2025-11-20 03:27:54] 2025-11-20 02:27:54,089 [wrapper] apfmon messages muted
[2025-11-20 03:27:54] 2025-11-20 02:27:54,092 [wrapper] ==== wrapper stdout END ====
[2025-11-20 03:27:54] 2025-11-20 02:27:54,096 [wrapper] ==== wrapper stderr END ====
[2025-11-20 03:27:54]  *** Error codes and diagnostics ***
[2025-11-20 03:27:54]     "exeErrorCode": 0,
[2025-11-20 03:27:54]     "exeErrorDiag": "",
[2025-11-20 03:27:54]     "pilotErrorCode": 0,
[2025-11-20 03:27:54]     "pilotErrorDiag": "",
[2025-11-20 03:27:54]  *** Listing of results directory ***
[2025-11-20 03:27:54] total 1313852
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-20 03:27:54] -rwx------ 1 boinc boinc     36292 Nov 18 16:33 runpilot2-wrapper.sh
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc       100 Nov 19 20:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 03:27:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 20:32 run_atlas
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc       105 Nov 19 20:32 job.xml
[2025-11-20 03:27:54] -rw-r--r-- 2 boinc boinc 410474360 Nov 19 20:32 EVNT.47493065._000165.pool.root.1
[2025-11-20 03:27:54] drwxrwx--x 2 boinc boinc      4096 Nov 19 20:32 shared
[2025-11-20 03:27:54] -rw-r--r-- 2 boinc boinc    590097 Nov 19 20:32 input.tar.gz
[2025-11-20 03:27:54] -rw-r--r-- 2 boinc boinc     15120 Nov 19 20:32 start_atlas.sh
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc         0 Nov 19 20:32 boinc_setup_complete
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc      6377 Nov 19 20:32 init_data.xml
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc         0 Nov 19 20:32 boinc_lockfile
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc      2773 Nov 19 20:32 pandaJob.out
[2025-11-20 03:27:54] -rw------- 1 boinc boinc    989451 Nov 19 20:32 agis_schedconf.cvmfs.json
[2025-11-20 03:27:54] drwx------ 5 boinc boinc      4096 Nov 19 20:32 pilot3
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc       531 Nov 20 03:21 boinc_task_state.xml
[2025-11-20 03:27:54] -rw------- 1 boinc boinc 921449362 Nov 20 03:26 HITS.47493068._001643.pool.root.1
[2025-11-20 03:27:54] -rw------- 1 boinc boinc      1027 Nov 20 03:27 memory_monitor_summary.json
[2025-11-20 03:27:54] -rw------- 1 boinc boinc   1525063 Nov 20 03:27 agis_ddmendpoints.agis.ALL.json
[2025-11-20 03:27:54] -rw------- 1 boinc boinc   1267684 Nov 20 03:27 log.47493068._001643.job.log.tgz.1
[2025-11-20 03:27:54] -rw------- 1 boinc boinc      8574 Nov 20 03:27 heartbeat.json
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc      8192 Nov 20 03:27 boinc_mmap_file
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc        28 Nov 20 03:27 wrapper_checkpoint.txt
[2025-11-20 03:27:54] -rw------- 1 boinc boinc        95 Nov 20 03:27 pilot_heartbeat.json
[2025-11-20 03:27:54] -rw------- 1 boinc boinc      5009 Nov 20 03:27 pilotlog.txt
[2025-11-20 03:27:54] -rw------- 1 boinc boinc   3506451 Nov 20 03:27 log.47493068._001643.job.log.1
[2025-11-20 03:27:54] -rw------- 1 boinc boinc       353 Nov 20 03:27 output.list
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc       620 Nov 20 03:27 runtime_log
[2025-11-20 03:27:54] -rw------- 1 boinc boinc   4792320 Nov 20 03:27 result.tar.gz
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc      8783 Nov 20 03:27 runtime_log.err
[2025-11-20 03:27:54] -rw------- 1 boinc boinc       666 Nov 20 03:27 qJGODmWtcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKWFKDm21Vqon.diag
[2025-11-20 03:27:54] -rw-r--r-- 1 boinc boinc     10731 Nov 20 03:27 stderr.txt
[2025-11-20 03:27:54] HITS file was successfully produced:
[2025-11-20 03:27:54] -rw------- 1 boinc boinc 921449362 Nov 20 03:26 shared/HITS.pool.root.1
[2025-11-20 03:27:54]  *** Contents of shared directory: ***
[2025-11-20 03:27:54] total 1305996
[2025-11-20 03:27:54] -rw-r--r-- 2 boinc boinc 410474360 Nov 19 20:32 ATLAS.root_0
[2025-11-20 03:27:54] -rw-r--r-- 2 boinc boinc    590097 Nov 19 20:32 input.tar.gz
[2025-11-20 03:27:54] -rw-r--r-- 2 boinc boinc     15120 Nov 19 20:32 start_atlas.sh
[2025-11-20 03:27:54] -rw------- 1 boinc boinc 921449362 Nov 20 03:26 HITS.pool.root.1
[2025-11-20 03:27:54] -rw------- 1 boinc boinc   4792320 Nov 20 03:27 result.tar.gz
03:27:55 (184773): run_atlas exited; CPU time 97298.905171
03:27:55 (184773): called boinc_finish(0)

</stderr_txt>
]]>

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