Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:57:15 (27649): wrapper (7.7.26015): starting
20:57:15 (27649): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:57:15] Arguments: --nthreads 8
[2025-11-20 20:57:15] Threads: 8
[2025-11-20 20:57:15] Checking for CVMFS
[2025-11-20 20:57:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:57:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:57:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:57:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:57:18] 2.11.2.0 19422 277159 141912 153088 1 180 17875016 25165825 4632 130560 2 135240535 99.873 80523353 3220 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 20:57:18] CVMFS is ok
[2025-11-20 20:57:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:57:18] Checking for apptainer binary...
[2025-11-20 20:57:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:57:18] Running /usr/bin/apptainer --version
[2025-11-20 20:57:18] apptainer version 1.3.2-1.el7
[2025-11-20 20:57:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:57:24] cg-vwn320.simple-grid.lan
[2025-11-20 20:57:24] apptainer works
[2025-11-20 20:57:24] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:57:24] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:57:24] Starting ATLAS job with PandaID=6891567033
[2025-11-20 20:57:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 22:54:09]  *** The last 200 lines of the pilot log: ***
[2025-11-21 22:54:09] 2025-11-21 21:53:23,492 | INFO     | mean x: 1763715678.8945982
[2025-11-21 22:54:09] 2025-11-21 21:53:23,492 | INFO     | mean y: 2872918.209486166
[2025-11-21 22:54:09] 2025-11-21 21:53:23,492 | INFO     | intersect: -6904596774.477928
[2025-11-21 22:54:09] 2025-11-21 21:53:23,494 | INFO     | chi2: 15.647490469914644
[2025-11-21 22:54:09] 2025-11-21 21:53:23,496 | INFO     | sum of square deviations: 1073979729416.8798
[2025-11-21 22:54:09] 2025-11-21 21:53:23,522 | INFO     | monitor loop #6272: job 0:6891567033 is in state 'finished'
[2025-11-21 22:54:09] 2025-11-21 21:53:23,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 22:54:09] 2025-11-21 21:53:23,569 | INFO     | sum of deviations: 4770955866916.956
[2025-11-21 22:54:09] 2025-11-21 21:53:23,570 | INFO     | mean x: 1763715526.3992069
[2025-11-21 22:54:09] 2025-11-21 21:53:23,570 | INFO     | mean y: 2880383.301387971
[2025-11-21 22:54:09] 2025-11-21 21:53:23,570 | INFO     | intersect: -7832098907.057805
[2025-11-21 22:54:09] 2025-11-21 21:53:23,572 | INFO     | chi2: 12.44642602276077
[2025-11-21 22:54:09] 2025-11-21 21:53:23,572 | INFO     | current chi2=12.44642602276077 (change=20.45736633173572 %)
[2025-11-21 22:54:09] 2025-11-21 21:53:23,572 | INFO     | right removable region: 1512
[2025-11-21 22:54:09] 2025-11-21 21:53:23,574 | INFO     | sum of square deviations: 1073978438046.8785
[2025-11-21 22:54:09] 2025-11-21 21:53:23,644 | INFO     | sum of deviations: 3604023755457.123
[2025-11-21 22:54:09] 2025-11-21 21:53:23,645 | INFO     | mean x: 1763715831.3992069
[2025-11-21 22:54:09] 2025-11-21 21:53:23,645 | INFO     | mean y: 2882110.43688037
[2025-11-21 22:54:09] 2025-11-21 21:53:23,645 | INFO     | intersect: -5915741140.32255
[2025-11-21 22:54:09] 2025-11-21 21:53:23,647 | INFO     | chi2: 10.84706993473596
[2025-11-21 22:54:09] 2025-11-21 21:53:23,647 | INFO     | current chi2=10.84706993473596 (change=30.678533049171243 %)
[2025-11-21 22:54:09] 2025-11-21 21:53:23,649 | INFO     | sum of square deviations: 1063365444537.057
[2025-11-21 22:54:09] 2025-11-21 21:53:23,710 | INFO     | sum of deviations: 3040910790797.1577
[2025-11-21 22:54:09] 2025-11-21 21:53:23,710 | INFO     | mean x: 1763715983.9038463
[2025-11-21 22:54:09] 2025-11-21 21:53:23,710 | INFO     | mean y: 2890201.145888594
[2025-11-21 22:54:09] 2025-11-21 21:53:23,711 | INFO     | intersect: -5040816075.852403
[2025-11-21 22:54:09] 2025-11-21 21:53:23,713 | INFO     | chi2: 7.279382251403006
[2025-11-21 22:54:09] 2025-11-21 21:53:23,713 | INFO     | current chi2=7.279382251403006 (change=32.890796360665284 %)
[2025-11-21 22:54:09] 2025-11-21 21:53:23,715 | INFO     | sum of square deviations: 1052822591877.1711
[2025-11-21 22:54:09] 2025-11-21 21:53:23,777 | INFO     | sum of deviations: 2602571143460.5366
[2025-11-21 22:54:09] 2025-11-21 21:53:23,778 | INFO     | mean x: 1763716136.4085164
[2025-11-21 22:54:09] 2025-11-21 21:53:23,778 | INFO     | mean y: 2896539.78576181
[2025-11-21 22:54:09] 2025-11-21 21:53:23,778 | INFO     | intersect: -4356999189.35911
[2025-11-21 22:54:09] 2025-11-21 21:53:23,780 | INFO     | chi2: 5.120925427342431
[2025-11-21 22:54:09] 2025-11-21 21:53:23,780 | INFO     | current chi2=5.120925427342431 (change=29.65164830634578 %)
[2025-11-21 22:54:09] 2025-11-21 21:53:23,782 | INFO     | sum of square deviations: 1042350106170.8331
[2025-11-21 22:54:09] 2025-11-21 21:53:23,842 | INFO     | sum of deviations: 2494779783846.046
[2025-11-21 22:54:09] 2025-11-21 21:53:23,842 | INFO     | mean x: 1763716288.90988
[2025-11-21 22:54:09] 2025-11-21 21:53:23,842 | INFO     | mean y: 2898109.267022697
[2025-11-21 22:54:09] 2025-11-21 21:53:23,843 | INFO     | intersect: -4218412672.938818
[2025-11-21 22:54:09] 2025-11-21 21:53:23,844 | INFO     | chi2: 5.045175246105421
[2025-11-21 22:54:09] 2025-11-21 21:53:23,845 | INFO     | current chi2=5.045175246105421 (change=1.479228360416137 %)
[2025-11-21 22:54:09] 2025-11-21 21:53:23,845 | INFO     | left removable region: 40
[2025-11-21 22:54:09] 2025-11-21 21:53:23,847 | INFO     | sum of square deviations: 989012916788.3856
[2025-11-21 22:54:09] 2025-11-21 21:53:23,912 | INFO     | sum of deviations: 2870285927919.8916
[2025-11-21 22:54:09] 2025-11-21 21:53:23,912 | INFO     | mean x: 1763716715.9150815
[2025-11-21 22:54:09] 2025-11-21 21:53:23,912 | INFO     | mean y: 2911487.6311141304
[2025-11-21 22:54:09] 2025-11-21 21:53:23,913 | INFO     | intersect: -5115698375.389831
[2025-11-21 22:54:09] 2025-11-21 21:53:23,914 | INFO     | chi2: 0.8608252292310796
[2025-11-21 22:54:09] 2025-11-21 21:53:23,915 | INFO     | current memory leak: 2.90 B/s (using 1472 data points, chi2=0.86)
[2025-11-21 22:54:09] 2025-11-21 21:53:23,917 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-21 22:54:09] 2025-11-21 21:53:23,917 | INFO     | ..............................
[2025-11-21 22:54:09] 2025-11-21 21:53:23,917 | INFO     | . Timing measurements:
[2025-11-21 22:54:09] 2025-11-21 21:53:23,918 | INFO     | . get job = 0 s
[2025-11-21 22:54:09] 2025-11-21 21:53:23,918 | INFO     | . initial setup = 4 s
[2025-11-21 22:54:09] 2025-11-21 21:53:23,918 | INFO     | . payload setup = 166 s
[2025-11-21 22:54:09] 2025-11-21 21:53:23,918 | INFO     | . stage-in = 0 s
[2025-11-21 22:54:09] 2025-11-21 21:53:23,918 | INFO     | . payload execution = 92729 s
[2025-11-21 22:54:09] 2025-11-21 21:53:23,918 | INFO     | . stage-out = 4 s
[2025-11-21 22:54:09] 2025-11-21 21:53:23,918 | INFO     | . log creation = 1 s
[2025-11-21 22:54:09] 2025-11-21 21:53:23,918 | INFO     | ..............................
[2025-11-21 22:54:09] 2025-11-21 21:53:24,043 | INFO     | time since job start (93126s) is within the limit (172800.0s)
[2025-11-21 22:54:09] 2025-11-21 21:53:24,382 | INFO     | 
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | job summary report
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | --------------------------------------------------
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | PanDA job id: 6891567033
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | task id: 47493068
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | errors: (none)
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | pilot state: finished 
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | transexitcode: 0
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | exeerrorcode: 0
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | exeerrordiag: 
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | exitcode: 0
[2025-11-21 22:54:09] 2025-11-21 21:53:24,383 | INFO     | exitmsg: OK
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | cpuconsumptiontime: 339662 s
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | nevents: 1000
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | neventsw: 0
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | pid: 5590
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | pgrp: 5590
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | corecount: 8
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | event service: False
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 13: 2298852, 24: 2298908, 35: 2298936, 45: 2299092, 56: 2299120, 67: 2299148, 78: 2299176, 88: 2299232, 99: 2299540, 10
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | --------------------------------------------------
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | 
[2025-11-21 22:54:09] 2025-11-21 21:53:24,384 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-21 22:54:09] 2025-11-21 21:53:24,423 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,423 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,424 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,425 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,425 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,425 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,425 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,425 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 22:54:09] 2025-11-21 21:53:24,425 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,425 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 22:54:09] 2025-11-21 21:53:24,425 | INFO     | job 6891567033 has completed (purged errors)
[2025-11-21 22:54:09] 2025-11-21 21:53:24,425 | INFO     | overall cleanup function is called
[2025-11-21 22:54:09] 2025-11-21 21:53:25,443 | INFO     | --- collectZombieJob: --- 10, [5590]
[2025-11-21 22:54:09] 2025-11-21 21:53:25,443 | INFO     | zombie collector waiting for pid 5590
[2025-11-21 22:54:09] 2025-11-21 21:53:25,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 22:54:09] 2025-11-21 21:53:25,444 | INFO     | collected zombie processes
[2025-11-21 22:54:09] 2025-11-21 21:53:25,444 | INFO     | will attempt to kill all subprocesses of pid=5590
[2025-11-21 22:54:09] 2025-11-21 21:53:25,540 | INFO     | process IDs to be killed: [5590] (in reverse order)
[2025-11-21 22:54:09] 2025-11-21 21:53:25,610 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 22:54:09] 2025-11-21 21:53:25,610 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 22:54:09] 2025-11-21 21:53:25,615 | INFO     | did not find any defunct processes belonging to 5590
[2025-11-21 22:54:09] 2025-11-21 21:53:25,618 | INFO     | did not find any defunct processes belonging to 5590
[2025-11-21 22:54:09] 2025-11-21 21:53:25,621 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 22:54:09] 2025-11-21 21:53:25,621 | INFO     | ready for new job
[2025-11-21 22:54:09] 2025-11-21 21:53:25,621 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 22:54:09] 2025-11-21 21:53:25,628 | INFO     | ***************************************
[2025-11-21 22:54:09] 2025-11-21 21:53:25,628 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 22:54:09] 2025-11-21 21:53:25,628 | INFO     | ***************************************
[2025-11-21 22:54:09] 2025-11-21 21:53:25,628 | INFO     | 
[2025-11-21 22:54:09] 2025-11-21 21:53:25,629 | INFO     | pilot is running in a VM
[2025-11-21 22:54:09] 2025-11-21 21:53:25,629 | INFO     | architecture information:
[2025-11-21 22:54:09] 2025-11-21 21:53:25,630 | INFO     | executing command: cat /etc/os-release
[2025-11-21 22:54:09] 2025-11-21 21:53:25,683 | INFO     | cat /etc/os-release:
[2025-11-21 22:54:09] NAME="CentOS Linux"
[2025-11-21 22:54:09] VERSION="7 (Core)"
[2025-11-21 22:54:09] ID="centos"
[2025-11-21 22:54:09] ID_LIKE="rhel fedora"
[2025-11-21 22:54:09] VERSION_ID="7"
[2025-11-21 22:54:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 22:54:09] ANSI_COLOR="0;31"
[2025-11-21 22:54:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 22:54:09] HOME_URL="https://www.centos.org/"
[2025-11-21 22:54:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 22:54:09] 
[2025-11-21 22:54:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 22:54:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 22:54:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 22:54:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 22:54:09] 
[2025-11-21 22:54:09] 2025-11-21 21:53:25,684 | INFO     | ***************************************
[2025-11-21 22:54:09] 2025-11-21 21:53:26,187 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-21 22:54:09] 2025-11-21 21:53:26,217 | INFO     | sufficient remaining disk space (493957939200 B)
[2025-11-21 22:54:09] 2025-11-21 21:53:26,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 22:54:09] 2025-11-21 21:53:26,218 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 22:54:09] 2025-11-21 21:53:26,218 | INFO     | update_server=False
[2025-11-21 22:54:09] 2025-11-21 21:53:26,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 22:54:09] 2025-11-21 21:53:26,372 | INFO     | all data control threads have been joined
[2025-11-21 22:54:09] 2025-11-21 21:53:26,694 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 22:54:09] 2025-11-21 21:53:26,927 | INFO     | all job control threads have been joined
[2025-11-21 22:54:09] 2025-11-21 21:53:27,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:54:09] 2025-11-21 21:53:27,071 | INFO     | aborting loop
[2025-11-21 22:54:09] 2025-11-21 21:53:27,224 | INFO     | [job] retrieve thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:27,252 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:27,274 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:27,378 | INFO     | [data] control thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:27,539 | INFO     | all payload control threads have been joined
[2025-11-21 22:54:09] 2025-11-21 21:53:27,589 | INFO     | [payload] failed_post thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:27,932 | INFO     | [job] control thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:28,076 | INFO     | [job] job monitor thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:28,171 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:28,263 | INFO     | [payload] validate_post thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:28,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 22:54:09] 2025-11-21 21:53:28,545 | INFO     | [payload] control thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:28,611 | INFO     | [job] validate thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:28,638 | INFO     | [data] copytool_in thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:28,699 | INFO     | [data] copytool_out thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:29,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:54:09] 2025-11-21 21:53:30,059 | INFO     | [job] queue monitor thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:32,495 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:36,389 | INFO     | job.realtimelogging is not enabled
[2025-11-21 22:54:09] 2025-11-21 21:53:37,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 22:54:09] 2025-11-21 21:53:57,232 | INFO     | PID=31450 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 22:54:09] 2025-11-21 21:53:57,232 | INFO     | .. there are 9 such processes running
[2025-11-21 22:54:09] 2025-11-21 21:53:57,232 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 22:54:09] 2025-11-21 21:53:57,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 22:54:09] 2025-11-21 21:53:57,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 22:54:09] 2025-11-21 21:54:00,698 | INFO     | [monitor] cgroup control has ended
[2025-11-21 22:54:09] 2025-11-21 21:54:01,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510688589632)>', '<ExcThread(monitor, started 140510081558272)>']
[2025-11-21 22:54:09] 2025-11-21 21:54:02,262 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 22:54:09] 2025-11-21 21:54:02,262 | INFO     | [monitor] control thread has ended
[2025-11-21 22:54:09] 2025-11-21 21:54:06,811 | INFO     | all workflow threads have been joined
[2025-11-21 22:54:09] 2025-11-21 21:54:06,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 22:54:09] 2025-11-21 21:54:06,812 | INFO     | traces error code: 0
[2025-11-21 22:54:09] 2025-11-21 21:54:06,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 22:54:09] 2025-11-21 21:54:07,085 [wrapper] ==== pilot stdout END ====
[2025-11-21 22:54:09] 2025-11-21 21:54:07,089 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 22:54:09] 2025-11-21 21:54:07,094 [wrapper] pilotpid: 31450
[2025-11-21 22:54:09] 2025-11-21 21:54:07,104 [wrapper] Pilot exit status: 0
[2025-11-21 22:54:09] 2025-11-21 21:54:07,127 [wrapper] pandaids: 6891567033
[2025-11-21 22:54:09] 2025-11-21 21:54:07,175 [wrapper] cleanup supervisor_pilot  1325 31451
[2025-11-21 22:54:09] 2025-11-21 21:54:07,180 [wrapper] Test setup, not cleaning
[2025-11-21 22:54:09] 2025-11-21 21:54:07,239 [wrapper] apfmon messages muted
[2025-11-21 22:54:09] 2025-11-21 21:54:07,387 [wrapper] ==== wrapper stdout END ====
[2025-11-21 22:54:09] 2025-11-21 21:54:07,460 [wrapper] ==== wrapper stderr END ====
[2025-11-21 22:54:09]  *** Error codes and diagnostics ***
[2025-11-21 22:54:09]     "exeErrorCode": 0,
[2025-11-21 22:54:09]     "exeErrorDiag": "",
[2025-11-21 22:54:09]     "pilotErrorCode": 0,
[2025-11-21 22:54:09]     "pilotErrorDiag": "",
[2025-11-21 22:54:09]  *** Listing of results directory ***
[2025-11-21 22:54:09] total 1337952
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-21 22:54:09] -rwx------. 1 boinc boinc     36292 Nov 18 16:32 runpilot2-wrapper.sh
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc       100 Nov 20 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 22:54:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 20:57 run_atlas
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc       105 Nov 20 20:57 job.xml
[2025-11-21 22:54:09] -rw-r--r--. 2 boinc boinc 409347795 Nov 20 20:57 EVNT.47493065._000157.pool.root.1
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc      6389 Nov 20 20:57 init_data.xml
[2025-11-21 22:54:09] -rw-r--r--. 2 boinc boinc    590099 Nov 20 20:57 input.tar.gz
[2025-11-21 22:54:09] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:57 start_atlas.sh
[2025-11-21 22:54:09] drwxrwx--x. 2 boinc boinc        68 Nov 20 20:57 shared
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc         0 Nov 20 20:57 boinc_lockfile
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc      2773 Nov 20 20:57 pandaJob.out
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc    989440 Nov 20 21:01 agis_schedconf.cvmfs.json
[2025-11-21 22:54:09] drwx------. 5 boinc boinc      4096 Nov 20 21:01 pilot3
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc       533 Nov 21 22:34 boinc_task_state.xml
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc 926779252 Nov 21 22:52 HITS.47493068._001565.pool.root.1
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc      1033 Nov 21 22:53 memory_monitor_summary.json
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc   1526164 Nov 21 22:53 agis_ddmendpoints.agis.ALL.json
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc   2591768 Nov 21 22:53 log.47493068._001565.job.log.tgz.1
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc        95 Nov 21 22:53 pilot_heartbeat.json
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc      8630 Nov 21 22:53 heartbeat.json
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc      8192 Nov 21 22:53 boinc_mmap_file
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc        29 Nov 21 22:53 wrapper_checkpoint.txt
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc      4956 Nov 21 22:54 pilotlog.txt
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc  12421231 Nov 21 22:54 log.47493068._001565.job.log.1
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc       353 Nov 21 22:54 output.list
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc       620 Nov 21 22:54 runtime_log
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc  15032320 Nov 21 22:54 result.tar.gz
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc       662 Nov 21 22:54 tMHKDmYscf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDVFKDmFTxVOn.diag
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc      8703 Nov 21 22:54 runtime_log.err
[2025-11-21 22:54:09] -rw-r--r--. 1 boinc boinc     20901 Nov 21 22:54 stderr.txt
[2025-11-21 22:54:09] HITS file was successfully produced:
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc 926779252 Nov 21 22:52 shared/HITS.pool.root.1
[2025-11-21 22:54:09]  *** Contents of shared directory: ***
[2025-11-21 22:54:09] total 1320092
[2025-11-21 22:54:09] -rw-r--r--. 2 boinc boinc 409347795 Nov 20 20:57 ATLAS.root_0
[2025-11-21 22:54:09] -rw-r--r--. 2 boinc boinc    590099 Nov 20 20:57 input.tar.gz
[2025-11-21 22:54:09] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:57 start_atlas.sh
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc 926779252 Nov 21 22:52 HITS.pool.root.1
[2025-11-21 22:54:09] -rw-------. 1 boinc boinc  15032320 Nov 21 22:54 result.tar.gz
22:54:11 (27649): run_atlas exited; CPU time 340166.150179
22:54:11 (27649): called boinc_finish(0)

</stderr_txt>
]]>

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