Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:06:00 (16283): wrapper (7.7.26015): starting
19:06:00 (16283): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 19:06:00] Arguments: --nthreads 8
[2025-11-19 19:06:00] Threads: 8
[2025-11-19 19:06:00] Checking for CVMFS
[2025-11-19 19:06:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:06:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:06:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:06:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:06:02] 2.11.2.0 19422 275607 142192 153052 0 129 17169063 25165824 3870 130560 2 134501192 99.873 80267622 3234 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 19:06:02] CVMFS is ok
[2025-11-19 19:06:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:06:02] Checking for apptainer binary...
[2025-11-19 19:06:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:06:02] Running /usr/bin/apptainer --version
[2025-11-19 19:06:02] apptainer version 1.3.2-1.el7
[2025-11-19 19:06:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:06:06] cg-vwn320.simple-grid.lan
[2025-11-19 19:06:06] apptainer works
[2025-11-19 19:06:06] Set ATHENA_PROC_NUMBER=8
[2025-11-19 19:06:06] Set ATHENA_CORE_NUMBER=8
[2025-11-19 19:06:07] Starting ATLAS job with PandaID=6891567031
[2025-11-19 19:06:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:57:04]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:57:04] 2025-11-20 19:55:42,498 | INFO     | time since job start (92852s) is within the limit (172800.0s)
[2025-11-20 20:57:04] 2025-11-20 19:55:44,501 | INFO     | monitor loop #6190: job 0:6891567031 is in state 'finished'
[2025-11-20 20:57:04] 2025-11-20 19:55:44,501 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:57:04] 2025-11-20 19:55:44,505 | INFO     | time since job start (92854s) is within the limit (172800.0s)
[2025-11-20 20:57:04] 2025-11-20 19:55:46,512 | INFO     | time since job start (92856s) is within the limit (172800.0s)
[2025-11-20 20:57:04] 2025-11-20 19:55:47,010 | INFO     | monitor loop #6191: job 0:6891567031 is in state 'finished'
[2025-11-20 20:57:04] 2025-11-20 19:55:47,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:57:04] 2025-11-20 19:55:48,523 | INFO     | time since job start (92858s) is within the limit (172800.0s)
[2025-11-20 20:57:04] 2025-11-20 19:55:49,522 | INFO     | monitor loop #6192: job 0:6891567031 is in state 'finished'
[2025-11-20 20:57:04] 2025-11-20 19:55:49,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:57:04] 2025-11-20 19:55:50,529 | INFO     | time since job start (92860s) is within the limit (172800.0s)
[2025-11-20 20:57:04] 2025-11-20 19:55:52,048 | INFO     | monitor loop #6193: job 0:6891567031 is in state 'finished'
[2025-11-20 20:57:04] 2025-11-20 19:55:52,048 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:57:04] 2025-11-20 19:55:52,275 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 20:57:04] 2025-11-20 19:55:52,276 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 20:57:04] 2025-11-20 19:55:52,278 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891567031/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 20:57:04] 2025-11-20 19:55:52,279 | INFO     | extracted standard info from prmon json
[2025-11-20 20:57:04] 2025-11-20 19:55:52,279 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 20:57:04] 2025-11-20 19:55:52,279 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 20:57:04] 2025-11-20 19:55:52,310 | INFO     | fitting pss+swap vs Time
[2025-11-20 20:57:04] 2025-11-20 19:55:52,313 | INFO     | sum of square deviations: 1088946337496.8534
[2025-11-20 20:57:04] 2025-11-20 19:55:52,382 | INFO     | sum of deviations: 2844415570864.8384
[2025-11-20 20:57:04] 2025-11-20 19:55:52,383 | INFO     | mean x: 1763622090.8848684
[2025-11-20 20:57:04] 2025-11-20 19:55:52,383 | INFO     | mean y: 2863692.7190789473
[2025-11-20 20:57:04] 2025-11-20 19:55:52,383 | INFO     | intersect: -4603859305.188629
[2025-11-20 20:57:04] 2025-11-20 19:55:52,385 | INFO     | chi2: 14.386161048905697
[2025-11-20 20:57:04] 2025-11-20 19:55:52,387 | INFO     | sum of square deviations: 1078236043802.2302
[2025-11-20 20:57:04] 2025-11-20 19:55:52,459 | INFO     | sum of deviations: 3346992404167.6772
[2025-11-20 20:57:04] 2025-11-20 19:55:52,460 | INFO     | mean x: 1763621938.3894389
[2025-11-20 20:57:04] 2025-11-20 19:55:52,460 | INFO     | mean y: 2870847.2547854786
[2025-11-20 20:57:04] 2025-11-20 19:55:52,460 | INFO     | intersect: -5471653275.308884
[2025-11-20 20:57:04] 2025-11-20 19:55:52,462 | INFO     | chi2: 11.212904578283561
[2025-11-20 20:57:04] 2025-11-20 19:55:52,462 | INFO     | current chi2=11.212904578283561 (change=22.057701563569758 %)
[2025-11-20 20:57:04] 2025-11-20 19:55:52,462 | INFO     | right removable region: 1514
[2025-11-20 20:57:04] 2025-11-20 19:55:52,464 | INFO     | sum of square deviations: 1078234759752.2307
[2025-11-20 20:57:04] 2025-11-20 19:55:52,531 | INFO     | sum of deviations: 2383120802442.2046
[2025-11-20 20:57:04] 2025-11-20 19:55:52,532 | INFO     | mean x: 1763622243.3894389
[2025-11-20 20:57:04] 2025-11-20 19:55:52,532 | INFO     | mean y: 2870257.5623762375
[2025-11-20 20:57:04] 2025-11-20 19:55:52,532 | INFO     | intersect: -3895097989.0159082
[2025-11-20 20:57:04] 2025-11-20 19:55:52,534 | INFO     | chi2: 11.973706077849037
[2025-11-20 20:57:04] 2025-11-20 19:55:52,534 | INFO     | current chi2=11.973706077849037 (change=16.76927543668897 %)
[2025-11-20 20:57:04] 2025-11-20 19:55:52,534 | INFO     | left removable region: 10
[2025-11-20 20:57:04] 2025-11-20 19:55:52,537 | INFO     | sum of square deviations: 1054919096410.6118
[2025-11-20 20:57:04] 2025-11-20 19:55:52,546 | INFO     | time since job start (92862s) is within the limit (172800.0s)
[2025-11-20 20:57:04] 2025-11-20 19:55:52,636 | INFO     | sum of deviations: 2881737615270.4434
[2025-11-20 20:57:04] 2025-11-20 19:55:52,637 | INFO     | mean x: 1763622212.8956118
[2025-11-20 20:57:04] 2025-11-20 19:55:52,637 | INFO     | mean y: 2880527.9900265955
[2025-11-20 20:57:04] 2025-11-20 19:55:52,637 | INFO     | intersect: -4814831548.054877
[2025-11-20 20:57:04] 2025-11-20 19:55:52,639 | INFO     | chi2: 8.047769912793067
[2025-11-20 20:57:04] 2025-11-20 19:55:52,639 | INFO     | current memory leak: 2.73 B/s (using 1504 data points, chi2=8.05)
[2025-11-20 20:57:04] 2025-11-20 19:55:52,641 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 20:57:04] 2025-11-20 19:55:52,641 | INFO     | ..............................
[2025-11-20 20:57:04] 2025-11-20 19:55:52,642 | INFO     | . Timing measurements:
[2025-11-20 20:57:04] 2025-11-20 19:55:52,642 | INFO     | . get job = 0 s
[2025-11-20 20:57:04] 2025-11-20 19:55:52,642 | INFO     | . initial setup = 2 s
[2025-11-20 20:57:04] 2025-11-20 19:55:52,642 | INFO     | . payload setup = 13 s
[2025-11-20 20:57:04] 2025-11-20 19:55:52,642 | INFO     | . stage-in = 0 s
[2025-11-20 20:57:04] 2025-11-20 19:55:52,642 | INFO     | . payload execution = 92707 s
[2025-11-20 20:57:04] 2025-11-20 19:55:52,642 | INFO     | . stage-out = 5 s
[2025-11-20 20:57:04] 2025-11-20 19:55:52,642 | INFO     | . log creation = 2 s
[2025-11-20 20:57:04] 2025-11-20 19:55:52,643 | INFO     | ..............................
[2025-11-20 20:57:04] 2025-11-20 19:55:53,192 | INFO     | 
[2025-11-20 20:57:04] 2025-11-20 19:55:53,192 | INFO     | job summary report
[2025-11-20 20:57:04] 2025-11-20 19:55:53,192 | INFO     | --------------------------------------------------
[2025-11-20 20:57:04] 2025-11-20 19:55:53,193 | INFO     | PanDA job id: 6891567031
[2025-11-20 20:57:04] 2025-11-20 19:55:53,193 | INFO     | task id: 47493068
[2025-11-20 20:57:04] 2025-11-20 19:55:53,193 | INFO     | errors: (none)
[2025-11-20 20:57:04] 2025-11-20 19:55:53,193 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:57:04] 2025-11-20 19:55:53,193 | INFO     | pilot state: finished 
[2025-11-20 20:57:04] 2025-11-20 19:55:53,193 | INFO     | transexitcode: 0
[2025-11-20 20:57:04] 2025-11-20 19:55:53,193 | INFO     | exeerrorcode: 0
[2025-11-20 20:57:04] 2025-11-20 19:55:53,193 | INFO     | exeerrordiag: 
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | exitcode: 0
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | exitmsg: OK
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | cpuconsumptiontime: 342942 s
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | nevents: 1000
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | neventsw: 0
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | pid: 26649
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | pgrp: 26649
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | corecount: 8
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | event service: False
[2025-11-20 20:57:04] 2025-11-20 19:55:53,194 | INFO     | sizes: {0: 2297200, 1: 2297200, 12: 2297518, 22: 2297518, 92724: 2360644, 92725: 2360643, 92730: 2371417, 92732: 2371473, 92831: 2371719}
[2025-11-20 20:57:04] 2025-11-20 19:55:53,195 | INFO     | --------------------------------------------------
[2025-11-20 20:57:04] 2025-11-20 19:55:53,195 | INFO     | 
[2025-11-20 20:57:04] 2025-11-20 19:55:53,195 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-20 20:57:04] 2025-11-20 19:55:53,597 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,598 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,598 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,598 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,598 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,598 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,599 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,599 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,599 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,599 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,599 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,599 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,599 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,599 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:57:04] 2025-11-20 19:55:53,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:57:04] 2025-11-20 19:55:53,600 | INFO     | job 6891567031 has completed (purged errors)
[2025-11-20 20:57:04] 2025-11-20 19:55:53,600 | INFO     | overall cleanup function is called
[2025-11-20 20:57:04] 2025-11-20 19:55:54,618 | INFO     | --- collectZombieJob: --- 10, [26649]
[2025-11-20 20:57:04] 2025-11-20 19:55:54,618 | INFO     | zombie collector waiting for pid 26649
[2025-11-20 20:57:04] 2025-11-20 19:55:54,618 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:57:04] 2025-11-20 19:55:54,619 | INFO     | collected zombie processes
[2025-11-20 20:57:04] 2025-11-20 19:55:54,619 | INFO     | will attempt to kill all subprocesses of pid=26649
[2025-11-20 20:57:04] 2025-11-20 19:55:54,755 | INFO     | process IDs to be killed: [26649] (in reverse order)
[2025-11-20 20:57:04] 2025-11-20 19:55:55,655 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:57:04] 2025-11-20 19:55:55,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:57:04] 2025-11-20 19:55:55,660 | INFO     | did not find any defunct processes belonging to 26649
[2025-11-20 20:57:04] 2025-11-20 19:55:55,663 | INFO     | did not find any defunct processes belonging to 26649
[2025-11-20 20:57:04] 2025-11-20 19:55:55,687 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:57:04] 2025-11-20 19:55:55,687 | INFO     | ready for new job
[2025-11-20 20:57:04] 2025-11-20 19:55:55,688 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:57:04] 2025-11-20 19:55:55,695 | INFO     | ***************************************
[2025-11-20 20:57:04] 2025-11-20 19:55:55,695 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:57:04] 2025-11-20 19:55:55,695 | INFO     | ***************************************
[2025-11-20 20:57:04] 2025-11-20 19:55:55,695 | INFO     | 
[2025-11-20 20:57:04] 2025-11-20 19:55:55,696 | INFO     | pilot is running in a VM
[2025-11-20 20:57:04] 2025-11-20 19:55:55,696 | INFO     | architecture information:
[2025-11-20 20:57:04] 2025-11-20 19:55:55,701 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:57:04] 2025-11-20 19:55:55,880 | INFO     | cat /etc/os-release:
[2025-11-20 20:57:04] NAME="CentOS Linux"
[2025-11-20 20:57:04] VERSION="7 (Core)"
[2025-11-20 20:57:04] ID="centos"
[2025-11-20 20:57:04] ID_LIKE="rhel fedora"
[2025-11-20 20:57:04] VERSION_ID="7"
[2025-11-20 20:57:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:57:04] ANSI_COLOR="0;31"
[2025-11-20 20:57:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:57:04] HOME_URL="https://www.centos.org/"
[2025-11-20 20:57:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:57:04] 
[2025-11-20 20:57:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:57:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:57:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:57:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:57:04] 
[2025-11-20 20:57:04] 2025-11-20 19:55:55,881 | INFO     | ***************************************
[2025-11-20 20:57:04] 2025-11-20 19:55:56,384 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-20 20:57:04] 2025-11-20 19:55:56,713 | INFO     | sufficient remaining disk space (494965620736 B)
[2025-11-20 20:57:04] 2025-11-20 19:55:56,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:57:04] 2025-11-20 19:55:56,713 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:57:04] 2025-11-20 19:55:56,713 | INFO     | update_server=False
[2025-11-20 20:57:04] 2025-11-20 19:55:56,714 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:57:04] 2025-11-20 19:55:56,918 | INFO     | all job control threads have been joined
[2025-11-20 20:57:04] 2025-11-20 19:55:57,064 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 20:57:04] 2025-11-20 19:55:57,064 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 20:57:04] 2025-11-20 19:55:57,065 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:57:04] 2025-11-20 19:55:57,065 | INFO     | will abort loop
[2025-11-20 20:57:04] 2025-11-20 19:55:57,165 | INFO     | all payload control threads have been joined
[2025-11-20 20:57:04] 2025-11-20 19:55:57,269 | INFO     | all data control threads have been joined
[2025-11-20 20:57:04] 2025-11-20 19:55:57,719 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:57,790 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:57:04] 2025-11-20 19:55:57,924 | INFO     | [job] control thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:57,959 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:58,071 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:58,098 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:57:04] 2025-11-20 19:55:58,171 | INFO     | [payload] control thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:58,275 | INFO     | [data] control thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:58,374 | INFO     | [job] validate thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:58,473 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:58,673 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:58,796 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:58,853 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:58,936 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:59,016 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:59,044 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:55:59,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:57:04] 2025-11-20 19:56:00,107 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:56:03,234 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:57:04] 2025-11-20 19:56:25,755 | INFO     | PID=20133 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:57:04] 2025-11-20 19:56:25,756 | INFO     | .. there are 9 such processes running
[2025-11-20 20:57:04] 2025-11-20 19:56:25,756 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:57:04] 2025-11-20 19:56:25,756 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:57:04] 2025-11-20 19:56:25,756 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:57:04] 2025-11-20 19:56:51,960 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:57:04] 2025-11-20 19:56:53,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140227436713792)>', '<ExcThread(monitor, started 140226789897984)>']
[2025-11-20 20:57:04] 2025-11-20 19:56:54,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:57:04] 2025-11-20 19:56:54,928 | INFO     | [monitor] control thread has ended
[2025-11-20 20:57:04] 2025-11-20 19:56:59,022 | INFO     | all workflow threads have been joined
[2025-11-20 20:57:04] 2025-11-20 19:56:59,022 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:57:04] 2025-11-20 19:56:59,023 | INFO     | traces error code: 0
[2025-11-20 20:57:04] 2025-11-20 19:56:59,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:57:04] 2025-11-20 19:56:59,507 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:57:04] 2025-11-20 19:56:59,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:57:04] 2025-11-20 19:56:59,700 [wrapper] pilotpid: 20133
[2025-11-20 20:57:04] 2025-11-20 19:56:59,792 [wrapper] Pilot exit status: 0
[2025-11-20 20:57:04] 2025-11-20 19:57:00,234 [wrapper] pandaids: 6891567031
[2025-11-20 20:57:04] 2025-11-20 19:57:01,082 [wrapper] cleanup supervisor_pilot 25355 20134
[2025-11-20 20:57:04] 2025-11-20 19:57:01,127 [wrapper] Test setup, not cleaning
[2025-11-20 20:57:04] 2025-11-20 19:57:01,228 [wrapper] apfmon messages muted
[2025-11-20 20:57:04] 2025-11-20 19:57:01,339 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:57:04] 2025-11-20 19:57:01,432 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:57:04]  *** Error codes and diagnostics ***
[2025-11-20 20:57:04]     "exeErrorCode": 0,
[2025-11-20 20:57:04]     "exeErrorDiag": "",
[2025-11-20 20:57:04]     "pilotErrorCode": 0,
[2025-11-20 20:57:04]     "pilotErrorDiag": "",
[2025-11-20 20:57:04]  *** Listing of results directory ***
[2025-11-20 20:57:04] total 1329120
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-20 20:57:04] -rwx------. 1 boinc boinc     36292 Nov 18 16:32 runpilot2-wrapper.sh
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc       100 Nov 19 19:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:57:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 19:05 run_atlas
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc       105 Nov 19 19:05 job.xml
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc      6388 Nov 19 19:06 init_data.xml
[2025-11-20 20:57:04] -rw-r--r--. 2 boinc boinc 409347795 Nov 19 19:06 EVNT.47493065._000157.pool.root.1
[2025-11-20 20:57:04] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:06 start_atlas.sh
[2025-11-20 20:57:04] drwxrwx--x. 2 boinc boinc        68 Nov 19 19:06 shared
[2025-11-20 20:57:04] -rw-r--r--. 2 boinc boinc    590102 Nov 19 19:06 input.tar.gz
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc         0 Nov 19 19:06 boinc_lockfile
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc      2773 Nov 19 19:06 pandaJob.out
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc    989434 Nov 19 19:08 agis_schedconf.cvmfs.json
[2025-11-20 20:57:04] drwx------. 5 boinc boinc      4096 Nov 19 19:08 pilot3
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc       533 Nov 20 20:30 boinc_task_state.xml
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc 917923346 Nov 20 20:52 HITS.47493068._001563.pool.root.1
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc      1033 Nov 20 20:54 memory_monitor_summary.json
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc   1526164 Nov 20 20:54 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc   2576121 Nov 20 20:54 log.47493068._001563.job.log.tgz.1
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc      7946 Nov 20 20:55 heartbeat.json
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc        95 Nov 20 20:55 pilot_heartbeat.json
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:56 boinc_mmap_file
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:56 wrapper_checkpoint.txt
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc      5070 Nov 20 20:56 pilotlog.txt
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc  12343626 Nov 20 20:57 log.47493068._001563.job.log.1
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc       353 Nov 20 20:57 output.list
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:57 runtime_log
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc  14940160 Nov 20 20:57 result.tar.gz
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc      8703 Nov 20 20:57 runtime_log.err
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc       662 Nov 20 20:57 Q5KODmXscf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBVFKDmSZbdBn.diag
[2025-11-20 20:57:04] -rw-r--r--. 1 boinc boinc     21397 Nov 20 20:57 stderr.txt
[2025-11-20 20:57:04] HITS file was successfully produced:
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc 917923346 Nov 20 20:52 shared/HITS.pool.root.1
[2025-11-20 20:57:04]  *** Contents of shared directory: ***
[2025-11-20 20:57:04] total 1311356
[2025-11-20 20:57:04] -rw-r--r--. 2 boinc boinc 409347795 Nov 19 19:06 ATLAS.root_0
[2025-11-20 20:57:04] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:06 start_atlas.sh
[2025-11-20 20:57:04] -rw-r--r--. 2 boinc boinc    590102 Nov 19 19:06 input.tar.gz
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc 917923346 Nov 20 20:52 HITS.pool.root.1
[2025-11-20 20:57:04] -rw-------. 1 boinc boinc  14940160 Nov 20 20:57 result.tar.gz
20:57:06 (16283): run_atlas exited; CPU time 343444.582897
20:57:06 (16283): called boinc_finish(0)

</stderr_txt>
]]>

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