Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:48:59 (13792): wrapper (7.7.26015): starting
15:48:59 (13792): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 15:48:59] Arguments: --nthreads 8
[2025-11-20 15:48:59] Threads: 8
[2025-11-20 15:48:59] Checking for CVMFS
[2025-11-20 15:48:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 15:48:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 15:48:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 15:49:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 15:49:00] 2.11.2.0 22385 276890 142636 153084 0 85 22080158 25165825 4632 130560 3 153114079 99.883 80345469 3217 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 15:49:00] CVMFS is ok
[2025-11-20 15:49:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 15:49:00] Checking for apptainer binary...
[2025-11-20 15:49:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 15:49:00] Running /usr/bin/apptainer --version
[2025-11-20 15:49:01] apptainer version 1.3.2-1.el7
[2025-11-20 15:49:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 15:49:26] cg-vwn497.simple-grid.lan
[2025-11-20 15:49:26] apptainer works
[2025-11-20 15:49:26] Set ATHENA_PROC_NUMBER=8
[2025-11-20 15:49:26] Set ATHENA_CORE_NUMBER=8
[2025-11-20 15:49:26] Starting ATLAS job with PandaID=6891567018
[2025-11-20 15:49:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 15:29:00]  *** The last 200 lines of the pilot log: ***
[2025-11-21 15:29:00] 2025-11-21 14:27:52,656 | INFO     | monitor loop #5760: job 0:6891567018 is in state 'finished'
[2025-11-21 15:29:00] 2025-11-21 14:27:52,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:29:00] 2025-11-21 14:27:52,769 | INFO     | time since job start (84869s) is within the limit (172800.0s)
[2025-11-21 15:29:00] 2025-11-21 14:27:54,776 | INFO     | time since job start (84871s) is within the limit (172800.0s)
[2025-11-21 15:29:00] 2025-11-21 14:27:55,161 | INFO     | monitor loop #5761: job 0:6891567018 is in state 'finished'
[2025-11-21 15:29:00] 2025-11-21 14:27:55,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:29:00] 2025-11-21 14:27:56,783 | INFO     | time since job start (84873s) is within the limit (172800.0s)
[2025-11-21 15:29:00] 2025-11-21 14:27:57,670 | INFO     | monitor loop #5762: job 0:6891567018 is in state 'finished'
[2025-11-21 15:29:00] 2025-11-21 14:27:57,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:29:00] 2025-11-21 14:27:58,791 | INFO     | time since job start (84875s) is within the limit (172800.0s)
[2025-11-21 15:29:00] 2025-11-21 14:28:00,177 | INFO     | monitor loop #5763: job 0:6891567018 is in state 'finished'
[2025-11-21 15:29:00] 2025-11-21 14:28:00,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:29:00] 2025-11-21 14:28:00,807 | INFO     | time since job start (84877s) is within the limit (172800.0s)
[2025-11-21 15:29:00] 2025-11-21 14:28:02,688 | INFO     | monitor loop #5764: job 0:6891567018 is in state 'finished'
[2025-11-21 15:29:00] 2025-11-21 14:28:02,688 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:29:00] 2025-11-21 14:28:02,813 | INFO     | time since job start (84879s) is within the limit (172800.0s)
[2025-11-21 15:29:00] 2025-11-21 14:28:03,878 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 15:29:00] 2025-11-21 14:28:03,879 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-21 15:29:00] 2025-11-21 14:28:03,881 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6891567018/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 15:29:00] 2025-11-21 14:28:03,882 | INFO     | extracted standard info from prmon json
[2025-11-21 15:29:00] 2025-11-21 14:28:03,882 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 15:29:00] 2025-11-21 14:28:03,882 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 15:29:00] 2025-11-21 14:28:03,914 | INFO     | fitting pss+swap vs Time
[2025-11-21 15:29:00] 2025-11-21 14:28:03,916 | INFO     | sum of square deviations: 818470371815.4795
[2025-11-21 15:29:00] 2025-11-21 14:28:03,979 | INFO     | sum of deviations: 2846455262543.413
[2025-11-21 15:29:00] 2025-11-21 14:28:03,980 | INFO     | mean x: 1763693039.7995658
[2025-11-21 15:29:00] 2025-11-21 14:28:03,980 | INFO     | mean y: 2846194.351664255
[2025-11-21 15:29:00] 2025-11-21 14:28:03,980 | INFO     | intersect: -6130880214.721652
[2025-11-21 15:29:00] 2025-11-21 14:28:03,982 | INFO     | chi2: 21.905656178507858
[2025-11-21 15:29:00] 2025-11-21 14:28:03,983 | INFO     | sum of square deviations: 809619488509.5045
[2025-11-21 15:29:00] 2025-11-21 14:28:04,034 | INFO     | sum of deviations: 3292905400221.178
[2025-11-21 15:29:00] 2025-11-21 14:28:04,035 | INFO     | mean x: 1763692887.3042846
[2025-11-21 15:29:00] 2025-11-21 14:28:04,035 | INFO     | mean y: 2853885.0377632533
[2025-11-21 15:29:00] 2025-11-21 14:28:04,035 | INFO     | intersect: -7170483609.13223
[2025-11-21 15:29:00] 2025-11-21 14:28:04,037 | INFO     | chi2: 18.835722167647564
[2025-11-21 15:29:00] 2025-11-21 14:28:04,037 | INFO     | current chi2=18.835722167647564 (change=14.014343993366776 %)
[2025-11-21 15:29:00] 2025-11-21 14:28:04,037 | INFO     | right removable region: 1376
[2025-11-21 15:29:00] 2025-11-21 14:28:04,039 | INFO     | sum of square deviations: 809618392949.5039
[2025-11-21 15:29:00] 2025-11-21 14:28:04,087 | INFO     | sum of deviations: 2266235258307.6914
[2025-11-21 15:29:00] 2025-11-21 14:28:04,088 | INFO     | mean x: 1763693192.3042846
[2025-11-21 15:29:00] 2025-11-21 14:28:04,088 | INFO     | mean y: 2856190.0007262165
[2025-11-21 15:29:00] 2025-11-21 14:28:04,088 | INFO     | intersect: -4933968037.368955
[2025-11-21 15:29:00] 2025-11-21 14:28:04,089 | INFO     | chi2: 17.226494747278316
[2025-11-21 15:29:00] 2025-11-21 14:28:04,090 | INFO     | current chi2=17.226494747278316 (change=21.360517087912548 %)
[2025-11-21 15:29:00] 2025-11-21 14:28:04,090 | INFO     | left removable region: 10
[2025-11-21 15:29:00] 2025-11-21 14:28:04,092 | INFO     | sum of square deviations: 790370474616.1412
[2025-11-21 15:29:00] 2025-11-21 14:28:04,135 | INFO     | sum of deviations: 2298887282421.2227
[2025-11-21 15:29:00] 2025-11-21 14:28:04,136 | INFO     | mean x: 1763693161.8147876
[2025-11-21 15:29:00] 2025-11-21 14:28:04,136 | INFO     | mean y: 2874663.9890190335
[2025-11-21 15:29:00] 2025-11-21 14:28:04,136 | INFO     | intersect: -5127038345.17096
[2025-11-21 15:29:00] 2025-11-21 14:28:04,137 | INFO     | chi2: 9.779238220003935
[2025-11-21 15:29:00] 2025-11-21 14:28:04,138 | INFO     | current memory leak: 2.91 B/s (using 1366 data points, chi2=9.78)
[2025-11-21 15:29:00] 2025-11-21 14:28:04,140 | INFO     | could have reported an average CPU frequency of 2249 MHz (47 samples)
[2025-11-21 15:29:00] 2025-11-21 14:28:04,140 | INFO     | ..............................
[2025-11-21 15:29:00] 2025-11-21 14:28:04,140 | INFO     | . Timing measurements:
[2025-11-21 15:29:00] 2025-11-21 14:28:04,141 | INFO     | . get job = 0 s
[2025-11-21 15:29:00] 2025-11-21 14:28:04,141 | INFO     | . initial setup = 7 s
[2025-11-21 15:29:00] 2025-11-21 14:28:04,141 | INFO     | . payload setup = 171 s
[2025-11-21 15:29:00] 2025-11-21 14:28:04,141 | INFO     | . stage-in = 0 s
[2025-11-21 15:29:00] 2025-11-21 14:28:04,141 | INFO     | . payload execution = 84407 s
[2025-11-21 15:29:00] 2025-11-21 14:28:04,141 | INFO     | . stage-out = 6 s
[2025-11-21 15:29:00] 2025-11-21 14:28:04,141 | INFO     | . log creation = 1 s
[2025-11-21 15:29:00] 2025-11-21 14:28:04,141 | INFO     | ..............................
[2025-11-21 15:29:00] 2025-11-21 14:28:04,256 | INFO     | 
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | job summary report
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | --------------------------------------------------
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | PanDA job id: 6891567018
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | task id: 47493068
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | errors: (none)
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | pilot state: finished 
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | transexitcode: 0
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | exeerrorcode: 0
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | exeerrordiag: 
[2025-11-21 15:29:00] 2025-11-21 14:28:04,257 | INFO     | exitcode: 0
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | exitmsg: OK
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | cpuconsumptiontime: 306580 s
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | nevents: 1000
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | neventsw: 0
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | pid: 24192
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | pgrp: 24192
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | corecount: 8
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | event service: False
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | sizes: {0: 2298570, 1: 2298825, 12: 2298825, 23: 2298853, 33: 2298881, 44: 2298937, 55: 2299093, 66: 2299121, 76: 2299149, 87: 2299205, 91: 2299495, 98: 2299803, 8
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | --------------------------------------------------
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | 
[2025-11-21 15:29:00] 2025-11-21 14:28:04,258 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-21 15:29:00] 2025-11-21 14:28:04,700 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,700 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,700 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,700 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,700 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,700 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,701 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 15:29:00] 2025-11-21 14:28:04,702 | INFO     | job 6891567018 has completed (purged errors)
[2025-11-21 15:29:00] 2025-11-21 14:28:04,702 | INFO     | overall cleanup function is called
[2025-11-21 15:29:00] 2025-11-21 14:28:05,724 | INFO     | --- collectZombieJob: --- 10, [24192]
[2025-11-21 15:29:00] 2025-11-21 14:28:05,724 | INFO     | zombie collector waiting for pid 24192
[2025-11-21 15:29:00] 2025-11-21 14:28:05,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 15:29:00] 2025-11-21 14:28:05,725 | INFO     | collected zombie processes
[2025-11-21 15:29:00] 2025-11-21 14:28:05,725 | INFO     | will attempt to kill all subprocesses of pid=24192
[2025-11-21 15:29:00] 2025-11-21 14:28:05,828 | INFO     | process IDs to be killed: [24192] (in reverse order)
[2025-11-21 15:29:00] 2025-11-21 14:28:06,816 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 15:29:00] 2025-11-21 14:28:06,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 15:29:00] 2025-11-21 14:28:06,820 | INFO     | did not find any defunct processes belonging to 24192
[2025-11-21 15:29:00] 2025-11-21 14:28:06,823 | INFO     | did not find any defunct processes belonging to 24192
[2025-11-21 15:29:00] 2025-11-21 14:28:06,877 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 15:29:00] 2025-11-21 14:28:06,878 | INFO     | ready for new job
[2025-11-21 15:29:00] 2025-11-21 14:28:06,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 15:29:00] 2025-11-21 14:28:06,885 | INFO     | ***************************************
[2025-11-21 15:29:00] 2025-11-21 14:28:06,885 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 15:29:00] 2025-11-21 14:28:06,885 | INFO     | ***************************************
[2025-11-21 15:29:00] 2025-11-21 14:28:06,885 | INFO     | 
[2025-11-21 15:29:00] 2025-11-21 14:28:06,886 | INFO     | pilot is running in a VM
[2025-11-21 15:29:00] 2025-11-21 14:28:06,886 | INFO     | architecture information:
[2025-11-21 15:29:00] 2025-11-21 14:28:06,892 | INFO     | executing command: cat /etc/os-release
[2025-11-21 15:29:00] 2025-11-21 14:28:07,165 | INFO     | cat /etc/os-release:
[2025-11-21 15:29:00] NAME="CentOS Linux"
[2025-11-21 15:29:00] VERSION="7 (Core)"
[2025-11-21 15:29:00] ID="centos"
[2025-11-21 15:29:00] ID_LIKE="rhel fedora"
[2025-11-21 15:29:00] VERSION_ID="7"
[2025-11-21 15:29:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 15:29:00] ANSI_COLOR="0;31"
[2025-11-21 15:29:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 15:29:00] HOME_URL="https://www.centos.org/"
[2025-11-21 15:29:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 15:29:00] 
[2025-11-21 15:29:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 15:29:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 15:29:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 15:29:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 15:29:00] 
[2025-11-21 15:29:00] 2025-11-21 14:28:07,165 | INFO     | ***************************************
[2025-11-21 15:29:00] 2025-11-21 14:28:07,668 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-21 15:29:00] 2025-11-21 14:28:07,947 | INFO     | sufficient remaining disk space (495803432960 B)
[2025-11-21 15:29:00] 2025-11-21 14:28:07,948 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 15:29:00] 2025-11-21 14:28:07,948 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 15:29:00] 2025-11-21 14:28:07,948 | INFO     | update_server=False
[2025-11-21 15:29:00] 2025-11-21 14:28:07,948 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 15:29:00] 2025-11-21 14:28:07,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 15:29:00] 2025-11-21 14:28:08,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 15:29:00] 2025-11-21 14:28:08,618 | INFO     | all data control threads have been joined
[2025-11-21 15:29:00] 2025-11-21 14:28:08,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:29:00] 2025-11-21 14:28:08,712 | INFO     | aborting loop
[2025-11-21 15:29:00] 2025-11-21 14:28:08,954 | INFO     | [job] retrieve thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:09,120 | INFO     | all payload control threads have been joined
[2025-11-21 15:29:00] 2025-11-21 14:28:09,270 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:29:00] 2025-11-21 14:28:09,351 | INFO     | all job control threads have been joined
[2025-11-21 15:29:00] 2025-11-21 14:28:09,483 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:09,624 | INFO     | [data] control thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:09,717 | INFO     | [job] job monitor thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,126 | INFO     | [payload] control thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,156 | INFO     | [data] copytool_in thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,206 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,216 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,242 | INFO     | [payload] failed_post thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,276 | INFO     | [job] queue monitor thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,333 | INFO     | [payload] validate_post thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,357 | INFO     | [job] control thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,371 | INFO     | [job] validate thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,373 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:10,532 | INFO     | [data] copytool_out thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:11,958 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 15:29:00] 2025-11-21 14:28:36,007 | INFO     | PID=17592 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 15:29:00] 2025-11-21 14:28:36,008 | INFO     | .. there are 9 such processes running
[2025-11-21 15:29:00] 2025-11-21 14:28:36,008 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 15:29:00] 2025-11-21 14:28:36,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 15:29:00] 2025-11-21 14:28:36,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 15:29:00] 2025-11-21 14:28:49,963 | INFO     | [monitor] cgroup control has ended
[2025-11-21 15:29:00] 2025-11-21 14:28:50,970 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862662321984)>', '<ExcThread(monitor, started 139862212585216)>']
[2025-11-21 15:29:00] 2025-11-21 14:28:51,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 15:29:00] 2025-11-21 14:28:51,098 | INFO     | [monitor] control thread has ended
[2025-11-21 15:29:00] 2025-11-21 14:28:55,996 | INFO     | all workflow threads have been joined
[2025-11-21 15:29:00] 2025-11-21 14:28:55,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 15:29:00] 2025-11-21 14:28:55,997 | INFO     | traces error code: 0
[2025-11-21 15:29:00] 2025-11-21 14:28:55,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 15:29:00] 2025-11-21 14:28:56,475 [wrapper] ==== pilot stdout END ====
[2025-11-21 15:29:00] 2025-11-21 14:28:56,585 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 15:29:00] 2025-11-21 14:28:56,681 [wrapper] pilotpid: 17592
[2025-11-21 15:29:00] 2025-11-21 14:28:56,724 [wrapper] Pilot exit status: 0
[2025-11-21 15:29:00] 2025-11-21 14:28:56,987 [wrapper] pandaids: 6891567018
[2025-11-21 15:29:00] 2025-11-21 14:28:57,788 [wrapper] cleanup supervisor_pilot 24215 17593
[2025-11-21 15:29:00] 2025-11-21 14:28:57,894 [wrapper] Test setup, not cleaning
[2025-11-21 15:29:00] 2025-11-21 14:28:57,976 [wrapper] apfmon messages muted
[2025-11-21 15:29:00] 2025-11-21 14:28:58,082 [wrapper] ==== wrapper stdout END ====
[2025-11-21 15:29:00] 2025-11-21 14:28:58,203 [wrapper] ==== wrapper stderr END ====
[2025-11-21 15:29:00]  *** Error codes and diagnostics ***
[2025-11-21 15:29:00]     "exeErrorCode": 0,
[2025-11-21 15:29:00]     "exeErrorDiag": "",
[2025-11-21 15:29:00]     "pilotErrorCode": 0,
[2025-11-21 15:29:00]     "pilotErrorDiag": "",
[2025-11-21 15:29:00]  *** Listing of results directory ***
[2025-11-21 15:29:00] total 1336052
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-21 15:29:00] -rwx------. 1 boinc boinc     36292 Nov 18 16:32 runpilot2-wrapper.sh
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc       100 Nov 20 15:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 15:29:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 15:48 run_atlas
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc       105 Nov 20 15:48 job.xml
[2025-11-21 15:29:00] -rw-r--r--. 2 boinc boinc 411677778 Nov 20 15:48 EVNT.47493065._000155.pool.root.1
[2025-11-21 15:29:00] -rw-r--r--. 2 boinc boinc     15120 Nov 20 15:48 start_atlas.sh
[2025-11-21 15:29:00] drwxrwx--x. 2 boinc boinc        68 Nov 20 15:48 shared
[2025-11-21 15:29:00] -rw-r--r--. 2 boinc boinc    590103 Nov 20 15:48 input.tar.gz
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc      6391 Nov 20 15:48 init_data.xml
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc         0 Nov 20 15:48 boinc_lockfile
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc      2773 Nov 20 15:49 pandaJob.out
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc    989440 Nov 20 15:53 agis_schedconf.cvmfs.json
[2025-11-21 15:29:00] drwx------. 5 boinc boinc      4096 Nov 20 15:53 pilot3
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc       533 Nov 21 15:04 boinc_task_state.xml
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc 924878165 Nov 21 15:24 HITS.47493068._001550.pool.root.1
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc      1035 Nov 21 15:26 memory_monitor_summary.json
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc   1526164 Nov 21 15:26 agis_ddmendpoints.agis.ALL.json
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc   2484431 Nov 21 15:26 log.47493068._001550.job.log.tgz.1
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc        95 Nov 21 15:28 pilot_heartbeat.json
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc      7946 Nov 21 15:28 heartbeat.json
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc        29 Nov 21 15:28 wrapper_checkpoint.txt
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc      8192 Nov 21 15:28 boinc_mmap_file
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc      4885 Nov 21 15:28 pilotlog.txt
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc  11345230 Nov 21 15:28 log.47493068._001550.job.log.1
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc       353 Nov 21 15:28 output.list
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc       620 Nov 21 15:28 runtime_log
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc  13844480 Nov 21 15:28 result.tar.gz
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc      8717 Nov 21 15:29 runtime_log.err
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc       662 Nov 21 15:29 IEoNDmXscf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0UFKDmmz2nFo.diag
[2025-11-21 15:29:00] -rw-r--r--. 1 boinc boinc     21446 Nov 21 15:29 stderr.txt
[2025-11-21 15:29:00] HITS file was successfully produced:
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc 924878165 Nov 21 15:24 shared/HITS.pool.root.1
[2025-11-21 15:29:00]  *** Contents of shared directory: ***
[2025-11-21 15:29:00] total 1319352
[2025-11-21 15:29:00] -rw-r--r--. 2 boinc boinc 411677778 Nov 20 15:48 ATLAS.root_0
[2025-11-21 15:29:00] -rw-r--r--. 2 boinc boinc     15120 Nov 20 15:48 start_atlas.sh
[2025-11-21 15:29:00] -rw-r--r--. 2 boinc boinc    590103 Nov 20 15:48 input.tar.gz
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc 924878165 Nov 21 15:24 HITS.pool.root.1
[2025-11-21 15:29:00] -rw-------. 1 boinc boinc  13844480 Nov 21 15:28 result.tar.gz
15:29:02 (13792): run_atlas exited; CPU time 306972.312500
15:29:02 (13792): called boinc_finish(0)

</stderr_txt>
]]>

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