Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:29:25 (5352): wrapper (7.7.26015): starting
16:29:25 (5352): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 16:29:25] Arguments: --nthreads 8
[2025-11-19 16:29:25] Threads: 8
[2025-11-19 16:29:25] Checking for CVMFS
[2025-11-19 16:29:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 16:29:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 16:29:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 16:29:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 16:29:28] 2.11.2.0 22385 275490 142180 153049 1 128 21466050 25165824 4251 130560 3 152509281 99.883 80130524 3222 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 16:29:28] CVMFS is ok
[2025-11-19 16:29:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 16:29:28] Checking for apptainer binary...
[2025-11-19 16:29:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 16:29:28] Running /usr/bin/apptainer --version
[2025-11-19 16:29:28] apptainer version 1.3.2-1.el7
[2025-11-19 16:29:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 16:29:34] cg-vwn497.simple-grid.lan
[2025-11-19 16:29:34] apptainer works
[2025-11-19 16:29:34] Set ATHENA_PROC_NUMBER=8
[2025-11-19 16:29:34] Set ATHENA_CORE_NUMBER=8
[2025-11-19 16:29:35] Starting ATLAS job with PandaID=6891568713
[2025-11-19 16:29:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 15:48:51]  *** The last 200 lines of the pilot log: ***
[2025-11-20 15:48:51] 2025-11-20 14:48:00,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:48:51] 2025-11-20 14:48:00,614 | INFO     | PID=9166 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 15:48:51] 2025-11-20 14:48:00,614 | INFO     | .. there are 9 such processes running
[2025-11-20 15:48:51] 2025-11-20 14:48:01,616 | INFO     | time since job start (83687s) is within the limit (172800.0s)
[2025-11-20 15:48:51] 2025-11-20 14:48:02,740 | INFO     | monitor loop #5661: job 0:6891568713 is in state 'finished'
[2025-11-20 15:48:51] 2025-11-20 14:48:02,740 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:48:51] 2025-11-20 14:48:03,628 | INFO     | time since job start (83689s) is within the limit (172800.0s)
[2025-11-20 15:48:51] 2025-11-20 14:48:05,247 | INFO     | monitor loop #5662: job 0:6891568713 is in state 'finished'
[2025-11-20 15:48:51] 2025-11-20 14:48:05,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:48:51] 2025-11-20 14:48:05,637 | INFO     | time since job start (83691s) is within the limit (172800.0s)
[2025-11-20 15:48:51] 2025-11-20 14:48:07,643 | INFO     | time since job start (83693s) is within the limit (172800.0s)
[2025-11-20 15:48:51] 2025-11-20 14:48:07,751 | INFO     | monitor loop #5663: job 0:6891568713 is in state 'finished'
[2025-11-20 15:48:51] 2025-11-20 14:48:07,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:48:51] 2025-11-20 14:48:09,661 | INFO     | time since job start (83695s) is within the limit (172800.0s)
[2025-11-20 15:48:51] 2025-11-20 14:48:10,261 | INFO     | monitor loop #5664: job 0:6891568713 is in state 'finished'
[2025-11-20 15:48:51] 2025-11-20 14:48:10,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 15:48:51] 2025-11-20 14:48:10,390 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 15:48:51] 2025-11-20 14:48:10,393 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-20 15:48:51] 2025-11-20 14:48:10,395 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6891568713/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 15:48:51] 2025-11-20 14:48:10,396 | INFO     | extracted standard info from prmon json
[2025-11-20 15:48:51] 2025-11-20 14:48:10,396 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 15:48:51] 2025-11-20 14:48:10,396 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 15:48:51] 2025-11-20 14:48:10,433 | INFO     | fitting pss+swap vs Time
[2025-11-20 15:48:51] 2025-11-20 14:48:10,444 | INFO     | sum of square deviations: 785172415471.7203
[2025-11-20 15:48:51] 2025-11-20 14:48:10,518 | INFO     | sum of deviations: 3137945420409.05
[2025-11-20 15:48:51] 2025-11-20 14:48:10,518 | INFO     | mean x: 1763608443.1995597
[2025-11-20 15:48:51] 2025-11-20 14:48:10,518 | INFO     | mean y: 2826893.084372707
[2025-11-20 15:48:51] 2025-11-20 14:48:10,518 | INFO     | intersect: -7045442924.708424
[2025-11-20 15:48:51] 2025-11-20 14:48:10,520 | INFO     | chi2: 26.995363951064423
[2025-11-20 15:48:51] 2025-11-20 14:48:10,522 | INFO     | sum of square deviations: 776563627136.9984
[2025-11-20 15:48:51] 2025-11-20 14:48:10,594 | INFO     | sum of deviations: 3574117035298.2993
[2025-11-20 15:48:51] 2025-11-20 14:48:10,594 | INFO     | mean x: 1763608290.7039764
[2025-11-20 15:48:51] 2025-11-20 14:48:10,595 | INFO     | mean y: 2834617.9808541974
[2025-11-20 15:48:51] 2025-11-20 14:48:10,595 | INFO     | intersect: -8114133799.194813
[2025-11-20 15:48:51] 2025-11-20 14:48:10,596 | INFO     | chi2: 23.90262843367883
[2025-11-20 15:48:51] 2025-11-20 14:48:10,596 | INFO     | current chi2=23.90262843367883 (change=11.456543141970291 %)
[2025-11-20 15:48:51] 2025-11-20 14:48:10,597 | INFO     | right removable region: 1357
[2025-11-20 15:48:51] 2025-11-20 14:48:10,598 | INFO     | sum of square deviations: 776562629786.998
[2025-11-20 15:48:51] 2025-11-20 14:48:10,655 | INFO     | sum of deviations: 2560888757162.1855
[2025-11-20 15:48:51] 2025-11-20 14:48:10,655 | INFO     | mean x: 1763608595.7039764
[2025-11-20 15:48:51] 2025-11-20 14:48:10,655 | INFO     | mean y: 2837114.002945508
[2025-11-20 15:48:51] 2025-11-20 14:48:10,655 | INFO     | intersect: -5813056223.552713
[2025-11-20 15:48:51] 2025-11-20 14:48:10,657 | INFO     | chi2: 22.122438312549242
[2025-11-20 15:48:51] 2025-11-20 14:48:10,657 | INFO     | current chi2=22.122438312549242 (change=18.050972186737425 %)
[2025-11-20 15:48:51] 2025-11-20 14:48:10,657 | INFO     | left removable region: 10
[2025-11-20 15:48:51] 2025-11-20 14:48:10,659 | INFO     | sum of square deviations: 757844307844.4226
[2025-11-20 15:48:51] 2025-11-20 14:48:10,706 | INFO     | sum of deviations: 2576407865619.107
[2025-11-20 15:48:51] 2025-11-20 14:48:10,707 | INFO     | mean x: 1763608565.2138085
[2025-11-20 15:48:51] 2025-11-20 14:48:10,707 | INFO     | mean y: 2855816.489235338
[2025-11-20 15:48:51] 2025-11-20 14:48:10,707 | INFO     | intersect: -5992801777.369573
[2025-11-20 15:48:51] 2025-11-20 14:48:10,709 | INFO     | chi2: 14.547823986520608
[2025-11-20 15:48:51] 2025-11-20 14:48:10,709 | INFO     | current memory leak: 3.40 B/s (using 1347 data points, chi2=14.55)
[2025-11-20 15:48:51] 2025-11-20 14:48:10,713 | INFO     | could have reported an average CPU frequency of 2249 MHz (46 samples)
[2025-11-20 15:48:51] 2025-11-20 14:48:10,713 | INFO     | ..............................
[2025-11-20 15:48:51] 2025-11-20 14:48:10,713 | INFO     | . Timing measurements:
[2025-11-20 15:48:51] 2025-11-20 14:48:10,713 | INFO     | . get job = 0 s
[2025-11-20 15:48:51] 2025-11-20 14:48:10,713 | INFO     | . initial setup = 10 s
[2025-11-20 15:48:51] 2025-11-20 14:48:10,713 | INFO     | . payload setup = 147 s
[2025-11-20 15:48:51] 2025-11-20 14:48:10,713 | INFO     | . stage-in = 0 s
[2025-11-20 15:48:51] 2025-11-20 14:48:10,714 | INFO     | . payload execution = 83251 s
[2025-11-20 15:48:51] 2025-11-20 14:48:10,714 | INFO     | . stage-out = 5 s
[2025-11-20 15:48:51] 2025-11-20 14:48:10,714 | INFO     | . log creation = 2 s
[2025-11-20 15:48:51] 2025-11-20 14:48:10,714 | INFO     | ..............................
[2025-11-20 15:48:51] 2025-11-20 14:48:10,852 | INFO     | 
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | job summary report
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | --------------------------------------------------
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | PanDA job id: 6891568713
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | task id: 47493068
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | errors: (none)
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | pilot state: finished 
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | transexitcode: 0
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | exeerrorcode: 0
[2025-11-20 15:48:51] 2025-11-20 14:48:10,853 | INFO     | exeerrordiag: 
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | exitcode: 0
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | exitmsg: OK
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | cpuconsumptiontime: 305150 s
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | nevents: 1000
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | neventsw: 0
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | pid: 15740
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | pgrp: 15740
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | corecount: 8
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | event service: False
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | sizes: {0: 2296968, 1: 2297052, 2: 2297251, 13: 2297251, 23: 2297307, 34: 2297335, 45: 2297491, 55: 2297519, 66: 2297547, 77: 2297575, 88: 2297631, 97: 2298201, 98
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | --------------------------------------------------
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | 
[2025-11-20 15:48:51] 2025-11-20 14:48:10,854 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-20 15:48:51] 2025-11-20 14:48:11,163 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,163 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,163 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,163 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,163 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,163 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,163 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,164 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 15:48:51] 2025-11-20 14:48:11,165 | INFO     | job 6891568713 has completed (purged errors)
[2025-11-20 15:48:51] 2025-11-20 14:48:11,165 | INFO     | overall cleanup function is called
[2025-11-20 15:48:51] 2025-11-20 14:48:12,184 | INFO     | --- collectZombieJob: --- 10, [15740]
[2025-11-20 15:48:51] 2025-11-20 14:48:12,185 | INFO     | zombie collector waiting for pid 15740
[2025-11-20 15:48:51] 2025-11-20 14:48:12,185 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 15:48:51] 2025-11-20 14:48:12,185 | INFO     | collected zombie processes
[2025-11-20 15:48:51] 2025-11-20 14:48:12,185 | INFO     | will attempt to kill all subprocesses of pid=15740
[2025-11-20 15:48:51] 2025-11-20 14:48:12,296 | INFO     | process IDs to be killed: [15740] (in reverse order)
[2025-11-20 15:48:51] 2025-11-20 14:48:13,081 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 15:48:51] 2025-11-20 14:48:13,081 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 15:48:51] 2025-11-20 14:48:13,084 | INFO     | did not find any defunct processes belonging to 15740
[2025-11-20 15:48:51] 2025-11-20 14:48:13,088 | INFO     | did not find any defunct processes belonging to 15740
[2025-11-20 15:48:51] 2025-11-20 14:48:13,095 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 15:48:51] 2025-11-20 14:48:13,095 | INFO     | ready for new job
[2025-11-20 15:48:51] 2025-11-20 14:48:13,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 15:48:51] 2025-11-20 14:48:13,101 | INFO     | ***************************************
[2025-11-20 15:48:51] 2025-11-20 14:48:13,102 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 15:48:51] 2025-11-20 14:48:13,102 | INFO     | ***************************************
[2025-11-20 15:48:51] 2025-11-20 14:48:13,102 | INFO     | 
[2025-11-20 15:48:51] 2025-11-20 14:48:13,103 | INFO     | pilot is running in a VM
[2025-11-20 15:48:51] 2025-11-20 14:48:13,103 | INFO     | architecture information:
[2025-11-20 15:48:51] 2025-11-20 14:48:13,114 | INFO     | executing command: cat /etc/os-release
[2025-11-20 15:48:51] 2025-11-20 14:48:13,253 | INFO     | cat /etc/os-release:
[2025-11-20 15:48:51] NAME="CentOS Linux"
[2025-11-20 15:48:51] VERSION="7 (Core)"
[2025-11-20 15:48:51] ID="centos"
[2025-11-20 15:48:51] ID_LIKE="rhel fedora"
[2025-11-20 15:48:51] VERSION_ID="7"
[2025-11-20 15:48:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 15:48:51] ANSI_COLOR="0;31"
[2025-11-20 15:48:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 15:48:51] HOME_URL="https://www.centos.org/"
[2025-11-20 15:48:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 15:48:51] 
[2025-11-20 15:48:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 15:48:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 15:48:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 15:48:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 15:48:51] 
[2025-11-20 15:48:51] 2025-11-20 14:48:13,254 | INFO     | ***************************************
[2025-11-20 15:48:51] 2025-11-20 14:48:13,758 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-20 15:48:51] 2025-11-20 14:48:13,925 | INFO     | sufficient remaining disk space (495848521728 B)
[2025-11-20 15:48:51] 2025-11-20 14:48:13,925 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 15:48:51] 2025-11-20 14:48:13,925 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 15:48:51] 2025-11-20 14:48:13,926 | INFO     | update_server=False
[2025-11-20 15:48:51] 2025-11-20 14:48:13,926 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 15:48:51] 2025-11-20 14:48:13,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 15:48:51] 2025-11-20 14:48:13,933 | INFO     | aborting loop
[2025-11-20 15:48:51] 2025-11-20 14:48:13,933 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 15:48:51] 2025-11-20 14:48:14,421 | INFO     | all job control threads have been joined
[2025-11-20 15:48:51] 2025-11-20 14:48:14,542 | INFO     | all payload control threads have been joined
[2025-11-20 15:48:51] 2025-11-20 14:48:14,580 | INFO     | all data control threads have been joined
[2025-11-20 15:48:51] 2025-11-20 14:48:14,932 | INFO     | [job] retrieve thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:14,938 | INFO     | [job] job monitor thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:15,027 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:15,177 | INFO     | [payload] validate_post thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:15,427 | INFO     | [job] control thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:15,548 | INFO     | [payload] control thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:15,586 | INFO     | [data] control thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:15,645 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:15,871 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 15:48:51] 2025-11-20 14:48:15,876 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 15:48:51] 2025-11-20 14:48:15,939 | INFO     | [data] copytool_out thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:16,047 | INFO     | [payload] failed_post thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:16,109 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:16,222 | INFO     | [job] validate thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:16,386 | INFO     | [data] copytool_in thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:16,430 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:16,876 | INFO     | [job] queue monitor thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:19,885 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 15:48:51] 2025-11-20 14:48:39,995 | INFO     | [monitor] cgroup control has ended
[2025-11-20 15:48:51] 2025-11-20 14:48:41,528 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140684861204288)>', '<ExcThread(monitor, started 140684271023872)>']
[2025-11-20 15:48:51] 2025-11-20 14:48:42,866 | INFO     | PID=9166 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 15:48:51] 2025-11-20 14:48:42,867 | INFO     | .. there are 9 such processes running
[2025-11-20 15:48:51] 2025-11-20 14:48:42,867 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 15:48:51] 2025-11-20 14:48:42,867 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 15:48:51] 2025-11-20 14:48:42,867 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 15:48:51] 2025-11-20 14:48:42,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 15:48:51] 2025-11-20 14:48:42,867 | INFO     | [monitor] control thread has ended
[2025-11-20 15:48:51] 2025-11-20 14:48:46,554 | INFO     | all workflow threads have been joined
[2025-11-20 15:48:51] 2025-11-20 14:48:46,554 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 15:48:51] 2025-11-20 14:48:46,555 | INFO     | traces error code: 0
[2025-11-20 15:48:51] 2025-11-20 14:48:46,555 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 15:48:51] 2025-11-20 14:48:47,042 [wrapper] ==== pilot stdout END ====
[2025-11-20 15:48:51] 2025-11-20 14:48:47,099 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 15:48:51] 2025-11-20 14:48:47,158 [wrapper] pilotpid: 9166
[2025-11-20 15:48:51] 2025-11-20 14:48:47,251 [wrapper] Pilot exit status: 0
[2025-11-20 15:48:51] 2025-11-20 14:48:47,589 [wrapper] pandaids: 6891568713
[2025-11-20 15:48:51] 2025-11-20 14:48:48,550 [wrapper] cleanup supervisor_pilot 10961 9167
[2025-11-20 15:48:51] 2025-11-20 14:48:48,659 [wrapper] Test setup, not cleaning
[2025-11-20 15:48:51] 2025-11-20 14:48:48,749 [wrapper] apfmon messages muted
[2025-11-20 15:48:51] 2025-11-20 14:48:48,840 [wrapper] ==== wrapper stdout END ====
[2025-11-20 15:48:51] 2025-11-20 14:48:48,962 [wrapper] ==== wrapper stderr END ====
[2025-11-20 15:48:51]  *** Error codes and diagnostics ***
[2025-11-20 15:48:51]     "exeErrorCode": 0,
[2025-11-20 15:48:51]     "exeErrorDiag": "",
[2025-11-20 15:48:51]     "pilotErrorCode": 0,
[2025-11-20 15:48:51]     "pilotErrorDiag": "",
[2025-11-20 15:48:51]  *** Listing of results directory ***
[2025-11-20 15:48:51] total 1320176
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 15:48:51] -rwx------. 1 boinc boinc     36292 Nov 18 16:31 runpilot2-wrapper.sh
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc       100 Nov 19 16:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 15:48:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 16:29 run_atlas
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc       105 Nov 19 16:29 job.xml
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc      6391 Nov 19 16:29 init_data.xml
[2025-11-20 15:48:51] -rw-r--r--. 2 boinc boinc 408801424 Nov 19 16:29 EVNT.47493065._000193.pool.root.1
[2025-11-20 15:48:51] -rw-r--r--. 2 boinc boinc     15120 Nov 19 16:29 start_atlas.sh
[2025-11-20 15:48:51] drwxrwx--x. 2 boinc boinc        68 Nov 19 16:29 shared
[2025-11-20 15:48:51] -rw-r--r--. 2 boinc boinc    590096 Nov 19 16:29 input.tar.gz
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc         0 Nov 19 16:29 boinc_lockfile
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc      2770 Nov 19 16:29 pandaJob.out
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc    989434 Nov 19 16:33 agis_schedconf.cvmfs.json
[2025-11-20 15:48:51] drwx------. 5 boinc boinc      4096 Nov 19 16:33 pilot3
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc       533 Nov 20 15:19 boinc_task_state.xml
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc 911827671 Nov 20 15:45 HITS.47493068._001921.pool.root.1
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc      1031 Nov 20 15:46 memory_monitor_summary.json
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc   1526164 Nov 20 15:46 agis_ddmendpoints.agis.ALL.json
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc   2468823 Nov 20 15:46 log.47493068._001921.job.log.tgz.1
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc        95 Nov 20 15:47 pilot_heartbeat.json
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc      8627 Nov 20 15:48 heartbeat.json
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc        29 Nov 20 15:48 wrapper_checkpoint.txt
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc      8192 Nov 20 15:48 boinc_mmap_file
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc      4884 Nov 20 15:48 pilotlog.txt
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc  11192206 Nov 20 15:48 log.47493068._001921.job.log.1
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc       353 Nov 20 15:48 output.list
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc       620 Nov 20 15:48 runtime_log
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc  13680640 Nov 20 15:48 result.tar.gz
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc       662 Nov 20 15:48 yieKDmYrcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQUFKDmyR6Jxn.diag
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc      8717 Nov 20 15:48 runtime_log.err
[2025-11-20 15:48:51] -rw-r--r--. 1 boinc boinc     21522 Nov 20 15:48 stderr.txt
[2025-11-20 15:48:51] HITS file was successfully produced:
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc 911827671 Nov 20 15:45 shared/HITS.pool.root.1
[2025-11-20 15:48:51]  *** Contents of shared directory: ***
[2025-11-20 15:48:51] total 1303640
[2025-11-20 15:48:51] -rw-r--r--. 2 boinc boinc 408801424 Nov 19 16:29 ATLAS.root_0
[2025-11-20 15:48:51] -rw-r--r--. 2 boinc boinc     15120 Nov 19 16:29 start_atlas.sh
[2025-11-20 15:48:51] -rw-r--r--. 2 boinc boinc    590096 Nov 19 16:29 input.tar.gz
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc 911827671 Nov 20 15:45 HITS.pool.root.1
[2025-11-20 15:48:51] -rw-------. 1 boinc boinc  13680640 Nov 20 15:48 result.tar.gz
15:48:52 (5352): run_atlas exited; CPU time 305558.083481
15:48:52 (5352): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN