Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:54:33 (2628691): wrapper (7.7.26015): starting
23:54:33 (2628691): wrapper: running run_atlas (--nthreads 2)
[2025-11-19 23:54:33] Arguments: --nthreads 2
[2025-11-19 23:54:33] Threads: 2
[2025-11-19 23:54:33] Checking for CVMFS
[2025-11-19 23:54:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 23:54:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 23:54:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 23:54:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 23:54:34] 2.9.2.0 2533951 752 49956 153059 0 81 34733108 36864000 0 130560 0 238370 99.970 24784 18210 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 23:54:34] CVMFS is ok
[2025-11-19 23:54:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 23:54:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 23:54:34] Further information can be found at the LHC@home message board.
[2025-11-19 23:54:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 23:54:34] Checking for apptainer binary...
[2025-11-19 23:54:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 23:54:34] Running /usr/bin/apptainer --version
[2025-11-19 23:54:34] apptainer version 1.4.1-1.1
[2025-11-19 23:54:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 23:54:34] thA310
[2025-11-19 23:54:34] apptainer works
[2025-11-19 23:54:34] Set ATHENA_PROC_NUMBER=2
[2025-11-19 23:54:34] Set ATHENA_CORE_NUMBER=2
[2025-11-19 23:54:34] Starting ATLAS job with PandaID=6891565098
[2025-11-19 23:54:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:15:48 (2712904): wrapper (7.7.26015): starting
11:15:48 (2712904): wrapper: running run_atlas (--nthreads 2)
[2025-11-20 11:15:48] Arguments: --nthreads 2
[2025-11-20 11:15:48] Threads: 2
[2025-11-20 11:15:48] This job has been restarted, cleaning up previous attempt
[2025-11-20 11:15:48] Checking for CVMFS
[2025-11-20 11:15:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 11:15:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 11:15:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 11:15:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 11:15:49] 2.9.2.0 2713028 0 30020 153076 3 1 34802140 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 11:15:49] CVMFS is ok
[2025-11-20 11:15:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 11:15:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 11:15:49] Further information can be found at the LHC@home message board.
[2025-11-20 11:15:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 11:15:49] Checking for apptainer binary...
[2025-11-20 11:15:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 11:15:49] Running /usr/bin/apptainer --version
[2025-11-20 11:15:49] apptainer version 1.4.1-1.1
[2025-11-20 11:15:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 11:15:49] thA310
[2025-11-20 11:15:49] apptainer works
[2025-11-20 11:15:49] Set ATHENA_PROC_NUMBER=2
[2025-11-20 11:15:49] Set ATHENA_CORE_NUMBER=2
[2025-11-20 11:15:49] Starting ATLAS job with PandaID=6891565098
[2025-11-20 11:15:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:18:20 (2733365): wrapper (7.7.26015): starting
12:18:20 (2733365): wrapper: running run_atlas (--nthreads 2)
[2025-11-20 12:18:20] Arguments: --nthreads 2
[2025-11-20 12:18:20] Threads: 2
[2025-11-20 12:18:20] This job has been restarted, cleaning up previous attempt
[2025-11-20 12:18:20] Checking for CVMFS
[2025-11-20 12:18:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 12:18:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 12:18:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 12:18:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 12:18:20] 2.9.2.0 2733489 0 30024 153078 4 1 34815688 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 12:18:20] CVMFS is ok
[2025-11-20 12:18:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 12:18:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 12:18:20] Further information can be found at the LHC@home message board.
[2025-11-20 12:18:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 12:18:20] Checking for apptainer binary...
[2025-11-20 12:18:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 12:18:20] Running /usr/bin/apptainer --version
[2025-11-20 12:18:20] apptainer version 1.4.1-1.1
[2025-11-20 12:18:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 12:18:20] thA310
[2025-11-20 12:18:20] apptainer works
[2025-11-20 12:18:20] Set ATHENA_PROC_NUMBER=2
[2025-11-20 12:18:20] Set ATHENA_CORE_NUMBER=2
[2025-11-20 12:18:21] Starting ATLAS job with PandaID=6891565098
[2025-11-20 12:18:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 00:44:40]  *** The last 200 lines of the pilot log: ***
[2025-11-21 00:44:40] 2025-11-20 23:44:09,881 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 00:44:40] 2025-11-20 23:44:09,881 | INFO     | update_server=False
[2025-11-21 00:44:40] 2025-11-20 23:44:09,881 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 00:44:40] 2025-11-20 23:44:09,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:44:40] 2025-11-20 23:44:09,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 00:44:40] 2025-11-20 23:44:10,164 | INFO     | all job control threads have been joined
[2025-11-21 00:44:40] 2025-11-20 23:44:10,167 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 00:44:40] 2025-11-20 23:44:10,168 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 00:44:40] 2025-11-20 23:44:10,168 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:44:40] 2025-11-20 23:44:10,168 | INFO     | will abort loop
[2025-11-21 00:44:40] 2025-11-20 23:44:10,207 | INFO     | all payload control threads have been joined
[2025-11-21 00:44:40] 2025-11-20 23:44:10,887 | INFO     | [job] retrieve thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:10,888 | INFO     | [job] queue monitor thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:10,946 | INFO     | all data control threads have been joined
[2025-11-21 00:44:40] 2025-11-20 23:44:11,170 | INFO     | [job] control thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:11,174 | INFO     | [job] job monitor thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:11,213 | INFO     | [payload] control thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:11,266 | INFO     | [payload] validate_post thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:11,888 | INFO     | [data] copytool_out thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:11,889 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:11,934 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:11,952 | INFO     | [data] control thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:12,015 | INFO     | [job] validate thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:12,175 | INFO     | [data] copytool_in thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:12,225 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:12,256 | INFO     | [payload] failed_post thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:12,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 00:44:40] 2025-11-20 23:44:16,321 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:19,952 | INFO     | job.realtimelogging is not enabled
[2025-11-21 00:44:40] 2025-11-20 23:44:20,958 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 00:44:40] 2025-11-20 23:44:34,845 | INFO     | [monitor] cgroup control has ended
[2025-11-21 00:44:40] 2025-11-20 23:44:35,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140671343077184)>', '<ExcThread(monitor, started 140670530459392)>']
[2025-11-21 00:44:40] 2025-11-20 23:44:39,675 | INFO     | PID=2737556 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 00:44:40] 2025-11-20 23:44:39,675 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 00:44:40] 2025-11-20 23:44:39,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 00:44:40] 2025-11-20 23:44:39,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 00:44:40] 2025-11-20 23:44:39,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 00:44:40] 2025-11-20 23:44:39,675 | INFO     | [monitor] control thread has ended
[2025-11-21 00:44:40] 2025-11-20 23:44:40,167 | INFO     | all workflow threads have been joined
[2025-11-21 00:44:40] 2025-11-20 23:44:40,167 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 00:44:40] 2025-11-20 23:44:40,168 | INFO     | traces error code: 0
[2025-11-21 00:44:40] 2025-11-20 23:44:40,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 00:44:40] 2025-11-20 23:44:40,211 [wrapper] ==== pilot stdout END ====
[2025-11-21 00:44:40] 2025-11-20 23:44:40,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 00:44:40] 2025-11-20 23:44:40,216 [wrapper] pilotpid: 2737556
[2025-11-21 00:44:40] 2025-11-20 23:44:40,219 [wrapper] Pilot exit status: 0
[2025-11-21 00:44:40] 2025-11-20 23:44:40,225 [wrapper] pandaids: 6891565098 6891565098 6891565098
[2025-11-21 00:44:40] 2025-11-20 23:44:40,238 [wrapper] cleanup supervisor_pilot 2822616 2737557
[2025-11-21 00:44:40] 2025-11-20 23:44:40,240 [wrapper] Test setup, not cleaning
[2025-11-21 00:44:40] 2025-11-20 23:44:40,243 [wrapper] apfmon messages muted
[2025-11-21 00:44:40] 2025-11-20 23:44:40,245 [wrapper] ==== wrapper stdout END ====
[2025-11-21 00:44:40] 2025-11-20 23:44:40,247 [wrapper] ==== wrapper stderr END ====
[2025-11-21 00:44:40]  *** Error codes and diagnostics ***
[2025-11-21 00:44:40]     "exeErrorCode": 0,
[2025-11-21 00:44:40]     "exeErrorDiag": "",
[2025-11-21 00:44:40]     "pilotErrorCode": 0,
[2025-11-21 00:44:40]     "pilotErrorDiag": "",
[2025-11-21 00:44:40]  *** Listing of results directory ***
[2025-11-21 00:44:40] total 1716632
[2025-11-21 00:44:40] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-21 00:44:40] -rwx------ 1 boinc boinc     36292 Nov 18 16:30 runpilot2-wrapper.sh
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc       100 Nov 19 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 00:44:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 23:54 run_atlas
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc       105 Nov 19 23:54 job.xml
[2025-11-21 00:44:40] -rw-r--r-- 3 boinc boinc 409395397 Nov 19 23:54 EVNT.47493065._000132.pool.root.1
[2025-11-21 00:44:40] -rw-r--r-- 3 boinc boinc 409395397 Nov 19 23:54 ATLAS.root_0
[2025-11-21 00:44:40] drwxrwx--x 2 boinc boinc      4096 Nov 19 23:54 shared
[2025-11-21 00:44:40] -rw-r--r-- 2 boinc boinc    590103 Nov 19 23:54 input.tar.gz
[2025-11-21 00:44:40] -rw-r--r-- 2 boinc boinc     15120 Nov 19 23:54 start_atlas.sh
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc         0 Nov 19 23:54 boinc_setup_complete
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc         0 Nov 19 23:54 boinc_lockfile
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc      6213 Nov 20 12:18 init_data.xml
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc      2773 Nov 20 12:18 pandaJob.out
[2025-11-21 00:44:40] -rw------- 1 boinc boinc    989443 Nov 20 12:18 agis_schedconf.cvmfs.json
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc       532 Nov 21 00:40 boinc_task_state.xml
[2025-11-21 00:44:40] -rw------- 1 boinc boinc 920143891 Nov 21 00:43 HITS.47493068._001315.pool.root.1
[2025-11-21 00:44:40] -rw------- 1 boinc boinc      1020 Nov 21 00:43 memory_monitor_summary.json
[2025-11-21 00:44:40] -rw------- 1 boinc boinc   1526164 Nov 21 00:43 agis_ddmendpoints.agis.ALL.json
[2025-11-21 00:44:40] -rw------- 1 boinc boinc   1219482 Nov 21 00:43 log.47493068._001315.job.log.tgz.1
[2025-11-21 00:44:40] -rw------- 1 boinc boinc      8561 Nov 21 00:44 heartbeat.json
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc      8192 Nov 21 00:44 boinc_mmap_file
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc        29 Nov 21 00:44 wrapper_checkpoint.txt
[2025-11-21 00:44:40] -rw------- 1 boinc boinc        96 Nov 21 00:44 pilot_heartbeat.json
[2025-11-21 00:44:40] -rw------- 1 boinc boinc      5010 Nov 21 00:44 pilotlog.txt
[2025-11-21 00:44:40] -rw------- 1 boinc boinc   6270282 Nov 21 00:44 log.47493068._001315.job.log.1
[2025-11-21 00:44:40] -rw------- 1 boinc boinc       353 Nov 21 00:44 output.list
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc       620 Nov 21 00:44 runtime_log
[2025-11-21 00:44:40] -rw------- 1 boinc boinc   7505920 Nov 21 00:44 result.tar.gz
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc      8863 Nov 21 00:44 runtime_log.err
[2025-11-21 00:44:40] -rw------- 1 boinc boinc       916 Nov 21 00:44 mMkNDmcqcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBIFKDm1MA5On.diag
[2025-11-21 00:44:40] -rw-r--r-- 1 boinc boinc     12074 Nov 21 00:44 stderr.txt
[2025-11-21 00:44:40] HITS file was successfully produced:
[2025-11-21 00:44:40] -rw------- 1 boinc boinc 920143891 Nov 21 00:43 shared/HITS.pool.root.1
[2025-11-21 00:44:40]  *** Contents of shared directory: ***
[2025-11-21 00:44:40] total 1306320
[2025-11-21 00:44:40] -rw-r--r-- 3 boinc boinc 409395397 Nov 19 23:54 ATLAS.root_0
[2025-11-21 00:44:40] -rw-r--r-- 2 boinc boinc    590103 Nov 19 23:54 input.tar.gz
[2025-11-21 00:44:40] -rw-r--r-- 2 boinc boinc     15120 Nov 19 23:54 start_atlas.sh
[2025-11-21 00:44:40] -rw------- 1 boinc boinc 920143891 Nov 21 00:43 HITS.pool.root.1
[2025-11-21 00:44:40] -rw------- 1 boinc boinc   7505920 Nov 21 00:44 result.tar.gz
00:44:42 (2733365): run_atlas exited; CPU time 88789.401827
00:44:42 (2733365): called boinc_finish(0)

</stderr_txt>
]]>

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