Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:50:33 (23014): wrapper (7.7.26015): starting
12:50:33 (23014): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 12:50:33] Arguments: --nthreads 8
[2025-11-21 12:50:33] Threads: 8
[2025-11-21 12:50:33] Checking for CVMFS
[2025-11-21 12:50:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 12:50:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 12:50:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 12:50:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 12:50:36] 2.11.2.0 3140 277992 135804 153124 0 84 24677189 25165824 4632 130560 9 160238106 99.909 77263680 3381 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 12:50:36] CVMFS is ok
[2025-11-21 12:50:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 12:50:36] Checking for apptainer binary...
[2025-11-21 12:50:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 12:50:36] Running /usr/bin/apptainer --version
[2025-11-21 12:50:36] apptainer version 1.3.2-1.el7
[2025-11-21 12:50:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 12:50:52] cg-vwn243.simple-grid.lan
[2025-11-21 12:50:52] apptainer works
[2025-11-21 12:50:52] Set ATHENA_PROC_NUMBER=8
[2025-11-21 12:50:52] Set ATHENA_CORE_NUMBER=8
[2025-11-21 12:50:53] Starting ATLAS job with PandaID=6891565069
[2025-11-21 12:50:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 14:05:25]  *** The last 200 lines of the pilot log: ***
[2025-11-22 14:05:25] 2025-11-22 13:04:23,711 | INFO     | time since job start (90585s) is within the limit (172800.0s)
[2025-11-22 14:05:25] 2025-11-22 13:04:24,994 | INFO     | monitor loop #6059: job 0:6891565069 is in state 'finished'
[2025-11-22 14:05:25] 2025-11-22 13:04:24,994 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:05:25] 2025-11-22 13:04:25,720 | INFO     | time since job start (90587s) is within the limit (172800.0s)
[2025-11-22 14:05:25] 2025-11-22 13:04:27,502 | INFO     | monitor loop #6060: job 0:6891565069 is in state 'finished'
[2025-11-22 14:05:25] 2025-11-22 13:04:27,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:05:25] 2025-11-22 13:04:27,726 | INFO     | time since job start (90589s) is within the limit (172800.0s)
[2025-11-22 14:05:25] 2025-11-22 13:04:29,733 | INFO     | time since job start (90591s) is within the limit (172800.0s)
[2025-11-22 14:05:25] 2025-11-22 13:04:30,016 | INFO     | monitor loop #6061: job 0:6891565069 is in state 'finished'
[2025-11-22 14:05:25] 2025-11-22 13:04:30,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:05:25] 2025-11-22 13:04:31,740 | INFO     | time since job start (90593s) is within the limit (172800.0s)
[2025-11-22 14:05:25] 2025-11-22 13:04:32,526 | INFO     | monitor loop #6062: job 0:6891565069 is in state 'finished'
[2025-11-22 14:05:25] 2025-11-22 13:04:32,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:05:25] 2025-11-22 13:04:33,748 | INFO     | time since job start (90595s) is within the limit (172800.0s)
[2025-11-22 14:05:25] 2025-11-22 13:04:34,810 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 14:05:25] 2025-11-22 13:04:34,811 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 14:05:25] 2025-11-22 13:04:34,813 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891565069/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 14:05:25] 2025-11-22 13:04:34,817 | INFO     | extracted standard info from prmon json
[2025-11-22 14:05:25] 2025-11-22 13:04:34,818 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 14:05:25] 2025-11-22 13:04:34,818 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 14:05:25] 2025-11-22 13:04:34,849 | INFO     | fitting pss+swap vs Time
[2025-11-22 14:05:25] 2025-11-22 13:04:34,853 | INFO     | sum of square deviations: 995070722783.8744
[2025-11-22 14:05:25] 2025-11-22 13:04:34,921 | INFO     | sum of deviations: 3870671386745.279
[2025-11-22 14:05:25] 2025-11-22 13:04:34,921 | INFO     | mean x: 1763771568.317966
[2025-11-22 14:05:25] 2025-11-22 13:04:34,921 | INFO     | mean y: 2843796.8949152543
[2025-11-22 14:05:25] 2025-11-22 13:04:34,921 | INFO     | intersect: -6857955125.159182
[2025-11-22 14:05:25] 2025-11-22 13:04:34,923 | INFO     | chi2: 22.05410441446361
[2025-11-22 14:05:25] 2025-11-22 13:04:34,925 | INFO     | sum of square deviations: 984986205672.6592
[2025-11-22 14:05:25] 2025-11-22 13:04:34,984 | INFO     | sum of deviations: 4350396495061.1343
[2025-11-22 14:05:25] 2025-11-22 13:04:34,985 | INFO     | mean x: 1763771415.822449
[2025-11-22 14:05:25] 2025-11-22 13:04:34,985 | INFO     | mean y: 2851050.1537414966
[2025-11-22 14:05:25] 2025-11-22 13:04:34,985 | INFO     | intersect: -7787212344.940141
[2025-11-22 14:05:25] 2025-11-22 13:04:34,987 | INFO     | chi2: 18.976107457244428
[2025-11-22 14:05:25] 2025-11-22 13:04:34,987 | INFO     | current chi2=18.976107457244428 (change=13.956571980318353 %)
[2025-11-22 14:05:25] 2025-11-22 13:04:34,987 | INFO     | right removable region: 1469
[2025-11-22 14:05:25] 2025-11-22 13:04:34,990 | INFO     | sum of square deviations: 984985019832.6592
[2025-11-22 14:05:25] 2025-11-22 13:04:35,036 | INFO     | monitor loop #6063: job 0:6891565069 is in state 'finished'
[2025-11-22 14:05:25] 2025-11-22 13:04:35,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 14:05:25] 2025-11-22 13:04:35,060 | INFO     | sum of deviations: 3250989254182.4463
[2025-11-22 14:05:25] 2025-11-22 13:04:35,061 | INFO     | mean x: 1763771720.822449
[2025-11-22 14:05:25] 2025-11-22 13:04:35,061 | INFO     | mean y: 2853166.392517007
[2025-11-22 14:05:25] 2025-11-22 13:04:35,061 | INFO     | intersect: -5818558119.840875
[2025-11-22 14:05:25] 2025-11-22 13:04:35,063 | INFO     | chi2: 17.313453741915776
[2025-11-22 14:05:25] 2025-11-22 13:04:35,063 | INFO     | current chi2=17.313453741915776 (change=21.49554832722566 %)
[2025-11-22 14:05:25] 2025-11-22 13:04:35,063 | INFO     | left removable region: 10
[2025-11-22 14:05:25] 2025-11-22 13:04:35,065 | INFO     | sum of square deviations: 963038243179.7766
[2025-11-22 14:05:25] 2025-11-22 13:04:35,123 | INFO     | sum of deviations: 3329512735400.4917
[2025-11-22 14:05:25] 2025-11-22 13:04:35,124 | INFO     | mean x: 1763771690.3324194
[2025-11-22 14:05:25] 2025-11-22 13:04:35,124 | INFO     | mean y: 2870097.8649760108
[2025-11-22 14:05:25] 2025-11-22 13:04:35,124 | INFO     | intersect: -6095018897.602865
[2025-11-22 14:05:25] 2025-11-22 13:04:35,126 | INFO     | chi2: 10.201615277058544
[2025-11-22 14:05:25] 2025-11-22 13:04:35,126 | INFO     | current memory leak: 3.46 B/s (using 1459 data points, chi2=10.20)
[2025-11-22 14:05:25] 2025-11-22 13:04:35,129 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 14:05:25] 2025-11-22 13:04:35,129 | INFO     | ..............................
[2025-11-22 14:05:25] 2025-11-22 13:04:35,129 | INFO     | . Timing measurements:
[2025-11-22 14:05:25] 2025-11-22 13:04:35,129 | INFO     | . get job = 0 s
[2025-11-22 14:05:25] 2025-11-22 13:04:35,129 | INFO     | . initial setup = 8 s
[2025-11-22 14:05:25] 2025-11-22 13:04:35,130 | INFO     | . payload setup = 157 s
[2025-11-22 14:05:25] 2025-11-22 13:04:35,130 | INFO     | . stage-in = 0 s
[2025-11-22 14:05:25] 2025-11-22 13:04:35,130 | INFO     | . payload execution = 90133 s
[2025-11-22 14:05:25] 2025-11-22 13:04:35,130 | INFO     | . stage-out = 6 s
[2025-11-22 14:05:25] 2025-11-22 13:04:35,130 | INFO     | . log creation = 2 s
[2025-11-22 14:05:25] 2025-11-22 13:04:35,130 | INFO     | ..............................
[2025-11-22 14:05:25] 2025-11-22 13:04:35,270 | INFO     | 
[2025-11-22 14:05:25] 2025-11-22 13:04:35,270 | INFO     | job summary report
[2025-11-22 14:05:25] 2025-11-22 13:04:35,270 | INFO     | --------------------------------------------------
[2025-11-22 14:05:25] 2025-11-22 13:04:35,271 | INFO     | PanDA job id: 6891565069
[2025-11-22 14:05:25] 2025-11-22 13:04:35,271 | INFO     | task id: 47493068
[2025-11-22 14:05:25] 2025-11-22 13:04:35,271 | INFO     | errors: (none)
[2025-11-22 14:05:25] 2025-11-22 13:04:35,271 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 14:05:25] 2025-11-22 13:04:35,271 | INFO     | pilot state: finished 
[2025-11-22 14:05:25] 2025-11-22 13:04:35,271 | INFO     | transexitcode: 0
[2025-11-22 14:05:25] 2025-11-22 13:04:35,271 | INFO     | exeerrorcode: 0
[2025-11-22 14:05:25] 2025-11-22 13:04:35,271 | INFO     | exeerrordiag: 
[2025-11-22 14:05:25] 2025-11-22 13:04:35,271 | INFO     | exitcode: 0
[2025-11-22 14:05:25] 2025-11-22 13:04:35,272 | INFO     | exitmsg: OK
[2025-11-22 14:05:25] 2025-11-22 13:04:35,279 | INFO     | cpuconsumptiontime: 334650 s
[2025-11-22 14:05:25] 2025-11-22 13:04:35,279 | INFO     | nevents: 1000
[2025-11-22 14:05:25] 2025-11-22 13:04:35,279 | INFO     | neventsw: 0
[2025-11-22 14:05:25] 2025-11-22 13:04:35,279 | INFO     | pid: 960
[2025-11-22 14:05:25] 2025-11-22 13:04:35,280 | INFO     | pgrp: 960
[2025-11-22 14:05:25] 2025-11-22 13:04:35,280 | INFO     | corecount: 8
[2025-11-22 14:05:25] 2025-11-22 13:04:35,280 | INFO     | event service: False
[2025-11-22 14:05:25] 2025-11-22 13:04:35,280 | INFO     | sizes: {0: 2298569, 1: 2298824, 12: 2298824, 23: 2298852, 34: 2298880, 44: 2298908, 55: 2299064, 66: 2299092, 77: 2299120, 87: 2299176, 98: 2299204, 99: 2299774, 1
[2025-11-22 14:05:25] 2025-11-22 13:04:35,280 | INFO     | --------------------------------------------------
[2025-11-22 14:05:25] 2025-11-22 13:04:35,280 | INFO     | 
[2025-11-22 14:05:25] 2025-11-22 13:04:35,280 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-22 14:05:25] 2025-11-22 13:04:35,506 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,507 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,507 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,507 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,507 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,507 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,507 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,507 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,507 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,508 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,508 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,508 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,508 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,508 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,508 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,508 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,508 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 14:05:25] 2025-11-22 13:04:35,508 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,509 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 14:05:25] 2025-11-22 13:04:35,509 | INFO     | job 6891565069 has completed (purged errors)
[2025-11-22 14:05:25] 2025-11-22 13:04:35,509 | INFO     | overall cleanup function is called
[2025-11-22 14:05:25] 2025-11-22 13:04:36,527 | INFO     | --- collectZombieJob: --- 10, [960]
[2025-11-22 14:05:25] 2025-11-22 13:04:36,527 | INFO     | zombie collector waiting for pid 960
[2025-11-22 14:05:25] 2025-11-22 13:04:36,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 14:05:25] 2025-11-22 13:04:36,528 | INFO     | collected zombie processes
[2025-11-22 14:05:25] 2025-11-22 13:04:36,528 | INFO     | will attempt to kill all subprocesses of pid=960
[2025-11-22 14:05:25] 2025-11-22 13:04:36,653 | INFO     | process IDs to be killed: [960] (in reverse order)
[2025-11-22 14:05:25] 2025-11-22 13:04:37,387 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 14:05:25] 2025-11-22 13:04:37,387 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 14:05:25] 2025-11-22 13:04:37,391 | INFO     | did not find any defunct processes belonging to 960
[2025-11-22 14:05:25] 2025-11-22 13:04:37,394 | INFO     | did not find any defunct processes belonging to 960
[2025-11-22 14:05:25] 2025-11-22 13:04:37,427 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 14:05:25] 2025-11-22 13:04:37,428 | INFO     | ready for new job
[2025-11-22 14:05:25] 2025-11-22 13:04:37,428 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 14:05:25] 2025-11-22 13:04:37,434 | INFO     | ***************************************
[2025-11-22 14:05:25] 2025-11-22 13:04:37,435 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 14:05:25] 2025-11-22 13:04:37,435 | INFO     | ***************************************
[2025-11-22 14:05:25] 2025-11-22 13:04:37,435 | INFO     | 
[2025-11-22 14:05:25] 2025-11-22 13:04:37,435 | INFO     | pilot is running in a VM
[2025-11-22 14:05:25] 2025-11-22 13:04:37,436 | INFO     | architecture information:
[2025-11-22 14:05:25] 2025-11-22 13:04:37,441 | INFO     | executing command: cat /etc/os-release
[2025-11-22 14:05:25] 2025-11-22 13:04:37,472 | INFO     | cat /etc/os-release:
[2025-11-22 14:05:25] NAME="CentOS Linux"
[2025-11-22 14:05:25] VERSION="7 (Core)"
[2025-11-22 14:05:25] ID="centos"
[2025-11-22 14:05:25] ID_LIKE="rhel fedora"
[2025-11-22 14:05:25] VERSION_ID="7"
[2025-11-22 14:05:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 14:05:25] ANSI_COLOR="0;31"
[2025-11-22 14:05:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 14:05:25] HOME_URL="https://www.centos.org/"
[2025-11-22 14:05:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 14:05:25] 
[2025-11-22 14:05:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 14:05:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 14:05:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 14:05:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 14:05:25] 
[2025-11-22 14:05:25] 2025-11-22 13:04:37,472 | INFO     | ***************************************
[2025-11-22 14:05:25] 2025-11-22 13:04:37,975 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-22 14:05:25] 2025-11-22 13:04:38,208 | INFO     | sufficient remaining disk space (494898511872 B)
[2025-11-22 14:05:25] 2025-11-22 13:04:38,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 14:05:25] 2025-11-22 13:04:38,209 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 14:05:25] 2025-11-22 13:04:38,209 | INFO     | update_server=False
[2025-11-22 14:05:25] 2025-11-22 13:04:38,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 14:05:25] 2025-11-22 13:04:38,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 14:05:25] 2025-11-22 13:04:38,384 | INFO     | all payload control threads have been joined
[2025-11-22 14:05:25] 2025-11-22 13:04:38,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:05:25] 2025-11-22 13:04:38,548 | INFO     | aborting loop
[2025-11-22 14:05:25] 2025-11-22 13:04:39,074 | INFO     | all data control threads have been joined
[2025-11-22 14:05:25] 2025-11-22 13:04:39,215 | INFO     | [job] retrieve thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:39,390 | INFO     | [payload] control thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:39,393 | INFO     | [job] validate thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:39,457 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:39,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:39,516 | INFO     | [payload] validate_post thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:39,554 | INFO     | [job] job monitor thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:39,587 | INFO     | all job control threads have been joined
[2025-11-22 14:05:25] 2025-11-22 13:04:39,718 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:40,080 | INFO     | [data] control thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:40,104 | INFO     | [data] copytool_in thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:40,285 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 14:05:25] 2025-11-22 13:04:40,324 | INFO     | [data] copytool_out thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:40,545 | INFO     | [payload] failed_post thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:40,593 | INFO     | [job] control thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:40,650 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:41,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 14:05:25] 2025-11-22 13:04:41,291 | INFO     | [job] queue monitor thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:04:45,079 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 14:05:25] 2025-11-22 13:05:06,913 | INFO     | PID=26783 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 14:05:25] 2025-11-22 13:05:06,913 | INFO     | .. there are 9 such processes running
[2025-11-22 14:05:25] 2025-11-22 13:05:06,915 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 14:05:25] 2025-11-22 13:05:06,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 14:05:25] 2025-11-22 13:05:06,915 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 14:05:25] 2025-11-22 13:05:15,497 | INFO     | [monitor] cgroup control has ended
[2025-11-22 14:05:25] 2025-11-22 13:05:17,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139677739829056)>', '<ExcThread(monitor, started 139677168301824)>']
[2025-11-22 14:05:25] 2025-11-22 13:05:17,981 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 14:05:25] 2025-11-22 13:05:17,981 | INFO     | [monitor] control thread has ended
[2025-11-22 14:05:25] 2025-11-22 13:05:22,077 | INFO     | all workflow threads have been joined
[2025-11-22 14:05:25] 2025-11-22 13:05:22,077 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 14:05:25] 2025-11-22 13:05:22,078 | INFO     | traces error code: 0
[2025-11-22 14:05:25] 2025-11-22 13:05:22,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 14:05:25] 2025-11-22 13:05:22,374 [wrapper] ==== pilot stdout END ====
[2025-11-22 14:05:25] 2025-11-22 13:05:22,390 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 14:05:25] 2025-11-22 13:05:22,408 [wrapper] pilotpid: 26783
[2025-11-22 14:05:25] 2025-11-22 13:05:22,471 [wrapper] Pilot exit status: 0
[2025-11-22 14:05:25] 2025-11-22 13:05:22,941 [wrapper] pandaids: 6891565069
[2025-11-22 14:05:25] 2025-11-22 13:05:23,541 [wrapper] cleanup supervisor_pilot 10576 26784
[2025-11-22 14:05:25] 2025-11-22 13:05:23,631 [wrapper] Test setup, not cleaning
[2025-11-22 14:05:25] 2025-11-22 13:05:23,722 [wrapper] apfmon messages muted
[2025-11-22 14:05:25] 2025-11-22 13:05:23,804 [wrapper] ==== wrapper stdout END ====
[2025-11-22 14:05:25] 2025-11-22 13:05:23,846 [wrapper] ==== wrapper stderr END ====
[2025-11-22 14:05:25]  *** Error codes and diagnostics ***
[2025-11-22 14:05:25]     "exeErrorCode": 0,
[2025-11-22 14:05:25]     "exeErrorDiag": "",
[2025-11-22 14:05:25]     "pilotErrorCode": 0,
[2025-11-22 14:05:25]     "pilotErrorDiag": "",
[2025-11-22 14:05:25]  *** Listing of results directory ***
[2025-11-22 14:05:25] total 1336552
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-22 14:05:25] -rwx------. 1 boinc boinc     36292 Nov 18 16:30 runpilot2-wrapper.sh
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc       100 Nov 21 12:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 14:05:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 12:50 run_atlas
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc       105 Nov 21 12:50 job.xml
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc      6390 Nov 21 12:50 init_data.xml
[2025-11-22 14:05:25] -rw-r--r--. 2 boinc boinc 409818175 Nov 21 12:50 EVNT.47493065._000129.pool.root.1
[2025-11-22 14:05:25] -rw-r--r--. 2 boinc boinc     15120 Nov 21 12:50 start_atlas.sh
[2025-11-22 14:05:25] drwxrwx--x. 2 boinc boinc        68 Nov 21 12:50 shared
[2025-11-22 14:05:25] -rw-r--r--. 2 boinc boinc    590102 Nov 21 12:50 input.tar.gz
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc         0 Nov 21 12:50 boinc_lockfile
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc      2773 Nov 21 12:50 pandaJob.out
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc    989817 Nov 21 12:54 agis_schedconf.cvmfs.json
[2025-11-22 14:05:25] drwx------. 5 boinc boinc      4096 Nov 21 12:54 pilot3
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc       533 Nov 22 13:39 boinc_task_state.xml
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc 925780093 Nov 22 14:01 HITS.47493068._001286.pool.root.1
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc      1031 Nov 22 14:02 memory_monitor_summary.json
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc   1526164 Nov 22 14:02 agis_ddmendpoints.agis.ALL.json
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc   2551815 Nov 22 14:03 log.47493068._001286.job.log.tgz.1
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc      7947 Nov 22 14:04 heartbeat.json
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc        95 Nov 22 14:05 pilot_heartbeat.json
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc        29 Nov 22 14:05 wrapper_checkpoint.txt
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc      8192 Nov 22 14:05 boinc_mmap_file
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc      4884 Nov 22 14:05 pilotlog.txt
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc  12013104 Nov 22 14:05 log.47493068._001286.job.log.1
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc       353 Nov 22 14:05 output.list
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc       620 Nov 22 14:05 runtime_log
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc  14581760 Nov 22 14:05 result.tar.gz
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc      8703 Nov 22 14:05 runtime_log.err
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc       662 Nov 22 14:05 bVANDmcqcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlHFKDmCd1s5n.diag
[2025-11-22 14:05:25] -rw-r--r--. 1 boinc boinc     21425 Nov 22 14:05 stderr.txt
[2025-11-22 14:05:25] HITS file was successfully produced:
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc 925780093 Nov 22 14:01 shared/HITS.pool.root.1
[2025-11-22 14:05:25]  *** Contents of shared directory: ***
[2025-11-22 14:05:25] total 1319136
[2025-11-22 14:05:25] -rw-r--r--. 2 boinc boinc 409818175 Nov 21 12:50 ATLAS.root_0
[2025-11-22 14:05:25] -rw-r--r--. 2 boinc boinc     15120 Nov 21 12:50 start_atlas.sh
[2025-11-22 14:05:25] -rw-r--r--. 2 boinc boinc    590102 Nov 21 12:50 input.tar.gz
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc 925780093 Nov 22 14:01 HITS.pool.root.1
[2025-11-22 14:05:25] -rw-------. 1 boinc boinc  14581760 Nov 22 14:05 result.tar.gz
14:05:26 (23014): run_atlas exited; CPU time 335184.374328
14:05:26 (23014): called boinc_finish(0)

</stderr_txt>
]]>

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