Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:38:07 (9897): wrapper (7.7.26015): starting
18:38:07 (9897): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:38:07] Arguments: --nthreads 8
[2025-11-19 18:38:07] Threads: 8
[2025-11-19 18:38:07] Checking for CVMFS
[2025-11-19 18:38:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:38:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:38:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:38:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:38:09] 2.11.2.0 18458 275437 145264 153052 1 230 18672005 25165825 4397 130560 2 122551234 99.876 76276649 3071 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:38:09] CVMFS is ok
[2025-11-19 18:38:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:38:09] Checking for apptainer binary...
[2025-11-19 18:38:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:38:09] Running /usr/bin/apptainer --version
[2025-11-19 18:38:09] apptainer version 1.3.2-1.el7
[2025-11-19 18:38:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:38:14] cg-vwn434.simple-grid.lan
[2025-11-19 18:38:14] apptainer works
[2025-11-19 18:38:14] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:38:14] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:38:14] Starting ATLAS job with PandaID=6891564809
[2025-11-19 18:38:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:46:41]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:46:41] 2025-11-20 19:45:33,037 | INFO     | sum of deviations: 4667886653999.445
[2025-11-20 20:46:41] 2025-11-20 19:45:33,038 | INFO     | mean x: 1763621203.1052976
[2025-11-20 20:46:41] 2025-11-20 19:45:33,038 | INFO     | mean y: 2857912.8358404185
[2025-11-20 20:46:41] 2025-11-20 19:45:33,038 | INFO     | intersect: -7424343643.993608
[2025-11-20 20:46:41] 2025-11-20 19:45:33,040 | INFO     | chi2: 18.90797716842314
[2025-11-20 20:46:41] 2025-11-20 19:45:33,042 | INFO     | sum of square deviations: 1097572073180.9176
[2025-11-20 20:46:41] 2025-11-20 19:45:33,083 | INFO     | time since job start (93826s) is within the limit (172800.0s)
[2025-11-20 20:46:41] 2025-11-20 19:45:33,141 | INFO     | sum of deviations: 5189546788288.234
[2025-11-20 20:46:41] 2025-11-20 19:45:33,142 | INFO     | mean x: 1763621050.608924
[2025-11-20 20:46:41] 2025-11-20 19:45:33,142 | INFO     | mean y: 2865252.881233596
[2025-11-20 20:46:41] 2025-11-20 19:45:33,142 | INFO     | intersect: -8335898262.138007
[2025-11-20 20:46:41] 2025-11-20 19:45:33,144 | INFO     | chi2: 15.68191226631871
[2025-11-20 20:46:41] 2025-11-20 19:45:33,144 | INFO     | current chi2=15.68191226631871 (change=17.0619250984291 %)
[2025-11-20 20:46:41] 2025-11-20 19:45:33,144 | INFO     | right removable region: 1523
[2025-11-20 20:46:41] 2025-11-20 19:45:33,146 | INFO     | sum of square deviations: 1097571042280.917
[2025-11-20 20:46:41] 2025-11-20 19:45:33,221 | INFO     | sum of deviations: 4008480875907.7236
[2025-11-20 20:46:41] 2025-11-20 19:45:33,221 | INFO     | mean x: 1763621355.608924
[2025-11-20 20:46:41] 2025-11-20 19:45:33,222 | INFO     | mean y: 2867190.5347769028
[2025-11-20 20:46:41] 2025-11-20 19:45:33,222 | INFO     | intersect: -6438121323.164953
[2025-11-20 20:46:41] 2025-11-20 19:45:33,223 | INFO     | chi2: 13.876861445343268
[2025-11-20 20:46:41] 2025-11-20 19:45:33,224 | INFO     | current chi2=13.876861445343268 (change=26.608429226802638 %)
[2025-11-20 20:46:41] 2025-11-20 19:45:33,226 | INFO     | sum of square deviations: 1086803050519.7487
[2025-11-20 20:46:41] 2025-11-20 19:45:33,319 | INFO     | sum of deviations: 3404710784630.9053
[2025-11-20 20:46:41] 2025-11-20 19:45:33,319 | INFO     | mean x: 1763621508.112574
[2025-11-20 20:46:41] 2025-11-20 19:45:33,320 | INFO     | mean y: 2875741.193548387
[2025-11-20 20:46:41] 2025-11-20 19:45:33,320 | INFO     | intersect: -5522155832.656262
[2025-11-20 20:46:41] 2025-11-20 19:45:33,321 | INFO     | chi2: 9.781681128439061
[2025-11-20 20:46:41] 2025-11-20 19:45:33,322 | INFO     | current chi2=9.781681128439061 (change=29.510853971078944 %)
[2025-11-20 20:46:41] 2025-11-20 19:45:33,324 | INFO     | sum of square deviations: 1076105711246.0393
[2025-11-20 20:46:41] 2025-11-20 19:45:33,389 | INFO     | sum of deviations: 2885955859474.7466
[2025-11-20 20:46:41] 2025-11-20 19:45:33,389 | INFO     | mean x: 1763621660.6162484
[2025-11-20 20:46:41] 2025-11-20 19:45:33,389 | INFO     | mean y: 2883135.311096433
[2025-11-20 20:46:41] 2025-11-20 19:45:33,390 | INFO     | intersect: -4726888496.008064
[2025-11-20 20:46:41] 2025-11-20 19:45:33,391 | INFO     | chi2: 6.810059610371201
[2025-11-20 20:46:41] 2025-11-20 19:45:33,392 | INFO     | current chi2=6.810059610371201 (change=30.379456036736137 %)
[2025-11-20 20:46:41] 2025-11-20 19:45:33,394 | INFO     | sum of square deviations: 1065479253549.4738
[2025-11-20 20:46:41] 2025-11-20 19:45:33,462 | INFO     | sum of deviations: 2725064834910.6235
[2025-11-20 20:46:41] 2025-11-20 19:45:33,492 | INFO     | mean x: 1763621813.1166334
[2025-11-20 20:46:41] 2025-11-20 19:45:33,492 | INFO     | mean y: 2885442.4055666006
[2025-11-20 20:46:41] 2025-11-20 19:45:33,492 | INFO     | intersect: -4507745589.587865
[2025-11-20 20:46:41] 2025-11-20 19:45:33,494 | INFO     | chi2: 6.502662687909
[2025-11-20 20:46:41] 2025-11-20 19:45:33,494 | INFO     | current chi2=6.502662687909 (change=4.513865370488967 %)
[2025-11-20 20:46:41] 2025-11-20 19:45:33,494 | INFO     | left removable region: 40
[2025-11-20 20:46:41] 2025-11-20 19:45:33,501 | INFO     | sum of square deviations: 1011348523315.664
[2025-11-20 20:46:41] 2025-11-20 19:45:33,665 | INFO     | sum of deviations: 3093988471229.485
[2025-11-20 20:46:41] 2025-11-20 19:45:33,666 | INFO     | mean x: 1763622240.1227243
[2025-11-20 20:46:41] 2025-11-20 19:45:33,666 | INFO     | mean y: 2898583.958867161
[2025-11-20 20:46:41] 2025-11-20 19:45:33,666 | INFO     | intersect: -5392498504.924304
[2025-11-20 20:46:41] 2025-11-20 19:45:33,668 | INFO     | chi2: 2.3408157317921505
[2025-11-20 20:46:41] 2025-11-20 19:45:33,668 | INFO     | current memory leak: 3.06 B/s (using 1483 data points, chi2=2.34)
[2025-11-20 20:46:41] 2025-11-20 19:45:33,671 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | ..............................
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | . Timing measurements:
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | . get job = 0 s
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | . initial setup = 4 s
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | . payload setup = 135 s
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | . stage-in = 0 s
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | . payload execution = 93394 s
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | . stage-out = 4 s
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | . log creation = 1 s
[2025-11-20 20:46:41] 2025-11-20 19:45:33,672 | INFO     | ..............................
[2025-11-20 20:46:41] 2025-11-20 19:45:33,814 | INFO     | 
[2025-11-20 20:46:41] 2025-11-20 19:45:33,814 | INFO     | job summary report
[2025-11-20 20:46:41] 2025-11-20 19:45:33,814 | INFO     | --------------------------------------------------
[2025-11-20 20:46:41] 2025-11-20 19:45:33,814 | INFO     | PanDA job id: 6891564809
[2025-11-20 20:46:41] 2025-11-20 19:45:33,814 | INFO     | task id: 47493068
[2025-11-20 20:46:41] 2025-11-20 19:45:33,814 | INFO     | errors: (none)
[2025-11-20 20:46:41] 2025-11-20 19:45:33,815 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:46:41] 2025-11-20 19:45:33,815 | INFO     | pilot state: finished 
[2025-11-20 20:46:41] 2025-11-20 19:45:33,815 | INFO     | transexitcode: 0
[2025-11-20 20:46:41] 2025-11-20 19:45:33,815 | INFO     | exeerrorcode: 0
[2025-11-20 20:46:41] 2025-11-20 19:45:33,815 | INFO     | exeerrordiag: 
[2025-11-20 20:46:41] 2025-11-20 19:45:33,815 | INFO     | exitcode: 0
[2025-11-20 20:46:41] 2025-11-20 19:45:33,815 | INFO     | exitmsg: OK
[2025-11-20 20:46:41] 2025-11-20 19:45:33,815 | INFO     | cpuconsumptiontime: 344312 s
[2025-11-20 20:46:41] 2025-11-20 19:45:33,815 | INFO     | nevents: 1000
[2025-11-20 20:46:41] 2025-11-20 19:45:33,816 | INFO     | neventsw: 0
[2025-11-20 20:46:41] 2025-11-20 19:45:33,816 | INFO     | pid: 20289
[2025-11-20 20:46:41] 2025-11-20 19:45:33,816 | INFO     | pgrp: 20289
[2025-11-20 20:46:41] 2025-11-20 19:45:33,816 | INFO     | corecount: 8
[2025-11-20 20:46:41] 2025-11-20 19:45:33,816 | INFO     | event service: False
[2025-11-20 20:46:41] 2025-11-20 19:45:33,816 | INFO     | sizes: {0: 2296973, 1: 2297057, 2: 2297256, 12: 2297256, 23: 2297284, 34: 2297312, 45: 2297468, 55: 2297496, 66: 2297524, 77: 2297552, 88: 2297608, 99: 2297916, 10
[2025-11-20 20:46:41] 2025-11-20 19:45:33,816 | INFO     | --------------------------------------------------
[2025-11-20 20:46:41] 2025-11-20 19:45:33,816 | INFO     | 
[2025-11-20 20:46:41] 2025-11-20 19:45:33,817 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-20 20:46:41] 2025-11-20 19:45:34,184 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,185 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,185 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,185 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,185 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,186 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,186 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,186 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,186 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,186 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,186 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,186 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:46:41] 2025-11-20 19:45:34,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,187 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:46:41] 2025-11-20 19:45:34,187 | INFO     | job 6891564809 has completed (purged errors)
[2025-11-20 20:46:41] 2025-11-20 19:45:34,188 | INFO     | overall cleanup function is called
[2025-11-20 20:46:41] 2025-11-20 19:45:35,209 | INFO     | --- collectZombieJob: --- 10, [20289]
[2025-11-20 20:46:41] 2025-11-20 19:45:35,210 | INFO     | zombie collector waiting for pid 20289
[2025-11-20 20:46:41] 2025-11-20 19:45:35,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:46:41] 2025-11-20 19:45:35,210 | INFO     | collected zombie processes
[2025-11-20 20:46:41] 2025-11-20 19:45:35,210 | INFO     | will attempt to kill all subprocesses of pid=20289
[2025-11-20 20:46:41] 2025-11-20 19:45:35,317 | INFO     | process IDs to be killed: [20289] (in reverse order)
[2025-11-20 20:46:41] 2025-11-20 19:45:36,156 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:46:41] 2025-11-20 19:45:36,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:46:41] 2025-11-20 19:45:36,160 | INFO     | did not find any defunct processes belonging to 20289
[2025-11-20 20:46:41] 2025-11-20 19:45:36,164 | INFO     | did not find any defunct processes belonging to 20289
[2025-11-20 20:46:41] 2025-11-20 19:45:36,212 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:46:41] 2025-11-20 19:45:36,213 | INFO     | ready for new job
[2025-11-20 20:46:41] 2025-11-20 19:45:36,213 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:46:41] 2025-11-20 19:45:36,220 | INFO     | ***************************************
[2025-11-20 20:46:41] 2025-11-20 19:45:36,220 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:46:41] 2025-11-20 19:45:36,220 | INFO     | ***************************************
[2025-11-20 20:46:41] 2025-11-20 19:45:36,220 | INFO     | 
[2025-11-20 20:46:41] 2025-11-20 19:45:36,221 | INFO     | pilot is running in a VM
[2025-11-20 20:46:41] 2025-11-20 19:45:36,221 | INFO     | architecture information:
[2025-11-20 20:46:41] 2025-11-20 19:45:36,236 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:46:41] 2025-11-20 19:45:36,422 | INFO     | cat /etc/os-release:
[2025-11-20 20:46:41] NAME="CentOS Linux"
[2025-11-20 20:46:41] VERSION="7 (Core)"
[2025-11-20 20:46:41] ID="centos"
[2025-11-20 20:46:41] ID_LIKE="rhel fedora"
[2025-11-20 20:46:41] VERSION_ID="7"
[2025-11-20 20:46:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:46:41] ANSI_COLOR="0;31"
[2025-11-20 20:46:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:46:41] HOME_URL="https://www.centos.org/"
[2025-11-20 20:46:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:46:41] 
[2025-11-20 20:46:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:46:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:46:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:46:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:46:41] 
[2025-11-20 20:46:41] 2025-11-20 19:45:36,422 | INFO     | ***************************************
[2025-11-20 20:46:41] 2025-11-20 19:45:36,925 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-20 20:46:41] 2025-11-20 19:45:37,154 | INFO     | sufficient remaining disk space (494886977536 B)
[2025-11-20 20:46:41] 2025-11-20 19:45:37,154 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:46:41] 2025-11-20 19:45:37,154 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:46:41] 2025-11-20 19:45:37,155 | INFO     | update_server=False
[2025-11-20 20:46:41] 2025-11-20 19:45:37,155 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:46:41] 2025-11-20 19:45:37,190 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 20:46:41] 2025-11-20 19:45:37,191 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 20:46:41] 2025-11-20 19:45:37,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:46:41] 2025-11-20 19:45:37,191 | INFO     | will abort loop
[2025-11-20 20:46:41] 2025-11-20 19:45:37,356 | INFO     | all job control threads have been joined
[2025-11-20 20:46:41] 2025-11-20 19:45:37,579 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:46:41] 2025-11-20 19:45:37,592 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:46:41] 2025-11-20 19:45:37,964 | INFO     | all data control threads have been joined
[2025-11-20 20:46:41] 2025-11-20 19:45:38,160 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:38,190 | INFO     | all payload control threads have been joined
[2025-11-20 20:46:41] 2025-11-20 19:45:38,197 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:38,211 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:38,217 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:38,361 | INFO     | [job] control thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:38,779 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:38,810 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:38,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:46:41] 2025-11-20 19:45:38,850 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:38,970 | INFO     | [data] control thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:39,196 | INFO     | [payload] control thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:39,356 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:39,495 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:39,586 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:39,653 | INFO     | [job] validate thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:39,834 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:45:41,601 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:46:41] 2025-11-20 19:46:06,291 | INFO     | PID=13683 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:46:41] 2025-11-20 19:46:06,292 | INFO     | .. there are 9 such processes running
[2025-11-20 20:46:41] 2025-11-20 19:46:06,294 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:46:41] 2025-11-20 19:46:06,294 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:46:41] 2025-11-20 19:46:06,294 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:46:41] 2025-11-20 19:46:30,852 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:46:41] 2025-11-20 19:46:32,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140522480174912)>', '<ExcThread(monitor, started 140522152761088)>']
[2025-11-20 20:46:41] 2025-11-20 19:46:32,452 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:46:41] 2025-11-20 19:46:32,453 | INFO     | [monitor] control thread has ended
[2025-11-20 20:46:41] 2025-11-20 19:46:37,190 | INFO     | all workflow threads have been joined
[2025-11-20 20:46:41] 2025-11-20 19:46:37,191 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:46:41] 2025-11-20 19:46:37,191 | INFO     | traces error code: 0
[2025-11-20 20:46:41] 2025-11-20 19:46:37,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:46:41] 2025-11-20 19:46:37,570 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:46:41] 2025-11-20 19:46:37,638 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:46:41] 2025-11-20 19:46:37,744 [wrapper] pilotpid: 13683
[2025-11-20 20:46:41] 2025-11-20 19:46:37,852 [wrapper] Pilot exit status: 0
[2025-11-20 20:46:41] 2025-11-20 19:46:38,186 [wrapper] pandaids: 6891564809
[2025-11-20 20:46:41] 2025-11-20 19:46:38,856 [wrapper] cleanup supervisor_pilot 26357 13684
[2025-11-20 20:46:41] 2025-11-20 19:46:38,961 [wrapper] Test setup, not cleaning
[2025-11-20 20:46:41] 2025-11-20 19:46:39,053 [wrapper] apfmon messages muted
[2025-11-20 20:46:41] 2025-11-20 19:46:39,125 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:46:41] 2025-11-20 19:46:39,213 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:46:41]  *** Error codes and diagnostics ***
[2025-11-20 20:46:41]     "exeErrorCode": 0,
[2025-11-20 20:46:41]     "exeErrorDiag": "",
[2025-11-20 20:46:41]     "pilotErrorCode": 0,
[2025-11-20 20:46:41]     "pilotErrorDiag": "",
[2025-11-20 20:46:41]  *** Listing of results directory ***
[2025-11-20 20:46:41] total 1341172
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-20 20:46:41] -rwx------. 1 boinc boinc     36292 Nov 18 16:30 runpilot2-wrapper.sh
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:46:41] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:38 run_atlas
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:38 job.xml
[2025-11-20 20:46:41] -rw-r--r--. 2 boinc boinc 409497257 Nov 19 18:38 EVNT.47493065._000126.pool.root.1
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc      6389 Nov 19 18:38 init_data.xml
[2025-11-20 20:46:41] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:38 start_atlas.sh
[2025-11-20 20:46:41] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:38 shared
[2025-11-20 20:46:41] -rw-r--r--. 2 boinc boinc    590103 Nov 19 18:38 input.tar.gz
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:38 boinc_lockfile
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc      2773 Nov 19 18:38 pandaJob.out
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc    989434 Nov 19 18:41 agis_schedconf.cvmfs.json
[2025-11-20 20:46:41] drwx------. 5 boinc boinc      4096 Nov 19 18:41 pilot3
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc       533 Nov 20 20:20 boinc_task_state.xml
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc 929758890 Nov 20 20:43 HITS.47493068._001254.pool.root.1
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc      1033 Nov 20 20:44 memory_monitor_summary.json
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc   1526164 Nov 20 20:44 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc   2593487 Nov 20 20:44 log.47493068._001254.job.log.tgz.1
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc      8630 Nov 20 20:45 heartbeat.json
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc        95 Nov 20 20:46 pilot_heartbeat.json
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:46 boinc_mmap_file
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:46 wrapper_checkpoint.txt
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc      5070 Nov 20 20:46 pilotlog.txt
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc  12505679 Nov 20 20:46 log.47493068._001254.job.log.1
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc       353 Nov 20 20:46 output.list
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:46 runtime_log
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc  15114240 Nov 20 20:46 result.tar.gz
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc      8703 Nov 20 20:46 runtime_log.err
[2025-11-20 20:46:41] -rw-------. 1 boinc boinc       662 Nov 20 20:46 OXcMDmcqcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMHFKDm5OO7gm.diag
[2025-11-20 20:46:41] -rw-r--r--. 1 boinc boinc     20636 Nov 20 20:46 stderr.txt
[2025-11-20 20:46:42] HITS file was successfully produced:
[2025-11-20 20:46:42] -rw-------. 1 boinc boinc 929758890 Nov 20 20:43 shared/HITS.pool.root.1
[2025-11-20 20:46:42]  *** Contents of shared directory: ***
[2025-11-20 20:46:42] total 1323224
[2025-11-20 20:46:42] -rw-r--r--. 2 boinc boinc 409497257 Nov 19 18:38 ATLAS.root_0
[2025-11-20 20:46:42] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:38 start_atlas.sh
[2025-11-20 20:46:42] -rw-r--r--. 2 boinc boinc    590103 Nov 19 18:38 input.tar.gz
[2025-11-20 20:46:42] -rw-------. 1 boinc boinc 929758890 Nov 20 20:43 HITS.pool.root.1
[2025-11-20 20:46:42] -rw-------. 1 boinc boinc  15114240 Nov 20 20:46 result.tar.gz
20:46:43 (9897): run_atlas exited; CPU time 345014.461882
20:46:43 (9897): called boinc_finish(0)

</stderr_txt>
]]>

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