Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:30:21 (14122): wrapper (7.7.26015): starting
18:30:21 (14122): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:30:21] Arguments: --nthreads 8
[2025-11-19 18:30:21] Threads: 8
[2025-11-19 18:30:21] Checking for CVMFS
[2025-11-19 18:30:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:30:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:30:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:30:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:30:23] 2.11.2.0 23903 73570 112092 153052 2 128 18539881 25165824 4250 130560 237 20743637 99.871 12136149 1965 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:30:23] CVMFS is ok
[2025-11-19 18:30:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:30:24] Checking for apptainer binary...
[2025-11-19 18:30:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:30:24] Running /usr/bin/apptainer --version
[2025-11-19 18:30:24] apptainer version 1.3.2-1.el7
[2025-11-19 18:30:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:30:41] cg-vwn444.simple-grid.lan
[2025-11-19 18:30:41] apptainer works
[2025-11-19 18:30:41] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:30:41] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:30:41] Starting ATLAS job with PandaID=6891565349
[2025-11-19 18:30:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:05:09]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:05:10] 2025-11-20 19:04:21,417 | INFO     | time since job start (91799s) is within the limit (172800.0s)
[2025-11-20 20:05:10] 2025-11-20 19:04:23,065 | INFO     | monitor loop #6154: job 0:6891565349 is in state 'finished'
[2025-11-20 20:05:10] 2025-11-20 19:04:23,065 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:05:10] 2025-11-20 19:04:23,423 | INFO     | time since job start (91801s) is within the limit (172800.0s)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,245 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 20:05:10] 2025-11-20 19:04:25,246 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 20:05:10] 2025-11-20 19:04:25,248 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6891565349/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,249 | INFO     | extracted standard info from prmon json
[2025-11-20 20:05:10] 2025-11-20 19:04:25,249 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 20:05:10] 2025-11-20 19:04:25,249 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 20:05:10] 2025-11-20 19:04:25,278 | INFO     | fitting pss+swap vs Time
[2025-11-20 20:05:10] 2025-11-20 19:04:25,281 | INFO     | sum of square deviations: 1038177320851.7582
[2025-11-20 20:05:10] 2025-11-20 19:04:25,340 | INFO     | sum of deviations: 3236760396101.696
[2025-11-20 20:05:10] 2025-11-20 19:04:25,341 | INFO     | mean x: 1763619800.7372994
[2025-11-20 20:05:10] 2025-11-20 19:04:25,341 | INFO     | mean y: 2870474.8262032084
[2025-11-20 20:05:10] 2025-11-20 19:04:25,341 | INFO     | intersect: -5495626371.669986
[2025-11-20 20:05:10] 2025-11-20 19:04:25,343 | INFO     | chi2: 14.139176084013897
[2025-11-20 20:05:10] 2025-11-20 19:04:25,345 | INFO     | sum of square deviations: 1027803067619.0773
[2025-11-20 20:05:10] 2025-11-20 19:04:25,410 | INFO     | sum of deviations: 3732915874858.643
[2025-11-20 20:05:10] 2025-11-20 19:04:25,410 | INFO     | mean x: 1763619648.2414486
[2025-11-20 20:05:10] 2025-11-20 19:04:25,411 | INFO     | mean y: 2877769.4815560025
[2025-11-20 20:05:10] 2025-11-20 19:04:25,411 | INFO     | intersect: -6402477487.322431
[2025-11-20 20:05:10] 2025-11-20 19:04:25,413 | INFO     | chi2: 11.0219067196348
[2025-11-20 20:05:10] 2025-11-20 19:04:25,413 | INFO     | current chi2=11.0219067196348 (change=22.047036870157942 %)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,413 | INFO     | right removable region: 1490
[2025-11-20 20:05:10] 2025-11-20 19:04:25,415 | INFO     | sum of square deviations: 1027801938509.0787
[2025-11-20 20:05:10] 2025-11-20 19:04:25,451 | INFO     | time since job start (91803s) is within the limit (172800.0s)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,515 | INFO     | sum of deviations: 2627559346783.016
[2025-11-20 20:05:10] 2025-11-20 19:04:25,515 | INFO     | mean x: 1763619953.2414486
[2025-11-20 20:05:10] 2025-11-20 19:04:25,516 | INFO     | mean y: 2879428.177733065
[2025-11-20 20:05:10] 2025-11-20 19:04:25,516 | INFO     | intersect: -4505786997.412649
[2025-11-20 20:05:10] 2025-11-20 19:04:25,522 | INFO     | chi2: 9.855923126762564
[2025-11-20 20:05:10] 2025-11-20 19:04:25,522 | INFO     | current chi2=9.855923126762564 (change=30.29351167140556 %)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,525 | INFO     | sum of square deviations: 1017496178671.3151
[2025-11-20 20:05:10] 2025-11-20 19:04:25,625 | INFO     | monitor loop #6155: job 0:6891565349 is in state 'finished'
[2025-11-20 20:05:10] 2025-11-20 19:04:25,625 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,630 | INFO     | sum of deviations: 2357701744523.649
[2025-11-20 20:05:10] 2025-11-20 19:04:25,630 | INFO     | mean x: 1763620105.743607
[2025-11-20 20:05:10] 2025-11-20 19:04:25,630 | INFO     | mean y: 2883417.8048452223
[2025-11-20 20:05:10] 2025-11-20 19:04:25,630 | INFO     | intersect: -4083707064.941219
[2025-11-20 20:05:10] 2025-11-20 19:04:25,632 | INFO     | chi2: 8.909582859205656
[2025-11-20 20:05:10] 2025-11-20 19:04:25,632 | INFO     | current chi2=8.909582859205656 (change=9.601741565812697 %)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,633 | INFO     | left removable region: 20
[2025-11-20 20:05:10] 2025-11-20 19:04:25,635 | INFO     | sum of square deviations: 984982819855.3671
[2025-11-20 20:05:10] 2025-11-20 19:04:25,694 | INFO     | sum of deviations: 2784434431045.8237
[2025-11-20 20:05:10] 2025-11-20 19:04:25,694 | INFO     | mean x: 1763620227.7476192
[2025-11-20 20:05:10] 2025-11-20 19:04:25,695 | INFO     | mean y: 2895004.449659864
[2025-11-20 20:05:10] 2025-11-20 19:04:25,695 | INFO     | intersect: -4982658841.200585
[2025-11-20 20:05:10] 2025-11-20 19:04:25,696 | INFO     | chi2: 4.992214884190543
[2025-11-20 20:05:10] 2025-11-20 19:04:25,697 | INFO     | current memory leak: 2.83 B/s (using 1470 data points, chi2=4.99)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,699 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,700 | INFO     | ..............................
[2025-11-20 20:05:10] 2025-11-20 19:04:25,700 | INFO     | . Timing measurements:
[2025-11-20 20:05:10] 2025-11-20 19:04:25,700 | INFO     | . get job = 0 s
[2025-11-20 20:05:10] 2025-11-20 19:04:25,700 | INFO     | . initial setup = 6 s
[2025-11-20 20:05:10] 2025-11-20 19:04:25,700 | INFO     | . payload setup = 169 s
[2025-11-20 20:05:10] 2025-11-20 19:04:25,700 | INFO     | . stage-in = 0 s
[2025-11-20 20:05:10] 2025-11-20 19:04:25,700 | INFO     | . payload execution = 91408 s
[2025-11-20 20:05:10] 2025-11-20 19:04:25,700 | INFO     | . stage-out = 3 s
[2025-11-20 20:05:10] 2025-11-20 19:04:25,700 | INFO     | . log creation = 1 s
[2025-11-20 20:05:10] 2025-11-20 19:04:25,701 | INFO     | ..............................
[2025-11-20 20:05:10] 2025-11-20 19:04:25,835 | INFO     | 
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | job summary report
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | --------------------------------------------------
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | PanDA job id: 6891565349
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | task id: 47493068
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | errors: (none)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | pilot state: finished 
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | transexitcode: 0
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | exeerrorcode: 0
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | exeerrordiag: 
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | exitcode: 0
[2025-11-20 20:05:10] 2025-11-20 19:04:25,836 | INFO     | exitmsg: OK
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | cpuconsumptiontime: 338966 s
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | nevents: 1000
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | neventsw: 0
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | pid: 24592
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | pgrp: 24592
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | corecount: 8
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | event service: False
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | sizes: {0: 2296973, 1: 2297228, 2: 2297228, 12: 2297256, 23: 2297284, 34: 2297312, 45: 2297468, 56: 2297496, 66: 2297524, 77: 2297552, 88: 2297608, 98: 2297916, 10
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | --------------------------------------------------
[2025-11-20 20:05:10] 2025-11-20 19:04:25,837 | INFO     | 
[2025-11-20 20:05:10] 2025-11-20 19:04:25,838 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-20 20:05:10] 2025-11-20 19:04:25,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,886 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:05:10] 2025-11-20 19:04:25,886 | INFO     | job 6891565349 has completed (purged errors)
[2025-11-20 20:05:10] 2025-11-20 19:04:25,886 | INFO     | overall cleanup function is called
[2025-11-20 20:05:10] 2025-11-20 19:04:26,905 | INFO     | --- collectZombieJob: --- 10, [24592]
[2025-11-20 20:05:10] 2025-11-20 19:04:26,905 | INFO     | zombie collector waiting for pid 24592
[2025-11-20 20:05:10] 2025-11-20 19:04:26,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:05:10] 2025-11-20 19:04:26,905 | INFO     | collected zombie processes
[2025-11-20 20:05:10] 2025-11-20 19:04:26,905 | INFO     | will attempt to kill all subprocesses of pid=24592
[2025-11-20 20:05:10] 2025-11-20 19:04:27,007 | INFO     | process IDs to be killed: [24592] (in reverse order)
[2025-11-20 20:05:10] 2025-11-20 19:04:27,080 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:05:10] 2025-11-20 19:04:27,080 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:05:10] 2025-11-20 19:04:27,083 | INFO     | did not find any defunct processes belonging to 24592
[2025-11-20 20:05:10] 2025-11-20 19:04:27,088 | INFO     | did not find any defunct processes belonging to 24592
[2025-11-20 20:05:10] 2025-11-20 19:04:27,090 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:05:10] 2025-11-20 19:04:27,090 | INFO     | ready for new job
[2025-11-20 20:05:10] 2025-11-20 19:04:27,090 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:05:10] 2025-11-20 19:04:27,097 | INFO     | ***************************************
[2025-11-20 20:05:10] 2025-11-20 19:04:27,097 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:05:10] 2025-11-20 19:04:27,098 | INFO     | ***************************************
[2025-11-20 20:05:10] 2025-11-20 19:04:27,098 | INFO     | 
[2025-11-20 20:05:10] 2025-11-20 19:04:27,098 | INFO     | pilot is running in a VM
[2025-11-20 20:05:10] 2025-11-20 19:04:27,098 | INFO     | architecture information:
[2025-11-20 20:05:10] 2025-11-20 19:04:27,099 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:05:10] 2025-11-20 19:04:27,124 | INFO     | cat /etc/os-release:
[2025-11-20 20:05:10] NAME="CentOS Linux"
[2025-11-20 20:05:10] VERSION="7 (Core)"
[2025-11-20 20:05:10] ID="centos"
[2025-11-20 20:05:10] ID_LIKE="rhel fedora"
[2025-11-20 20:05:10] VERSION_ID="7"
[2025-11-20 20:05:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:05:10] ANSI_COLOR="0;31"
[2025-11-20 20:05:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:05:10] HOME_URL="https://www.centos.org/"
[2025-11-20 20:05:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:05:10] 
[2025-11-20 20:05:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:05:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:05:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:05:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:05:10] 
[2025-11-20 20:05:10] 2025-11-20 19:04:27,124 | INFO     | ***************************************
[2025-11-20 20:05:10] 2025-11-20 19:04:27,627 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-20 20:05:10] 2025-11-20 19:04:27,677 | INFO     | sufficient remaining disk space (495034826752 B)
[2025-11-20 20:05:10] 2025-11-20 19:04:27,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:05:10] 2025-11-20 19:04:27,678 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:05:10] 2025-11-20 19:04:27,678 | INFO     | update_server=False
[2025-11-20 20:05:10] 2025-11-20 19:04:27,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:05:10] 2025-11-20 19:04:27,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:05:10] 2025-11-20 19:04:27,741 | INFO     | all payload control threads have been joined
[2025-11-20 20:05:10] 2025-11-20 19:04:27,771 | INFO     | all data control threads have been joined
[2025-11-20 20:05:10] 2025-11-20 19:04:27,994 | INFO     | all job control threads have been joined
[2025-11-20 20:05:10] 2025-11-20 19:04:28,130 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 20:05:10] 2025-11-20 19:04:28,130 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 20:05:10] 2025-11-20 19:04:28,130 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:05:10] 2025-11-20 19:04:28,130 | INFO     | will abort loop
[2025-11-20 20:05:10] 2025-11-20 19:04:28,685 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:28,686 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:28,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:05:10] 2025-11-20 19:04:28,743 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:28,747 | INFO     | [payload] control thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:28,778 | INFO     | [data] control thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:28,999 | INFO     | [job] control thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:29,136 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:29,189 | INFO     | [job] validate thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:29,267 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:29,625 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:29,626 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:29,798 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:29,810 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:29,879 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:05:10] 2025-11-20 19:04:29,969 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:30,742 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:33,887 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:05:10] 2025-11-20 19:04:58,679 | INFO     | PID=17938 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:05:10] 2025-11-20 19:04:58,680 | INFO     | .. there are 8 such processes running
[2025-11-20 20:05:10] 2025-11-20 19:04:58,680 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:05:10] 2025-11-20 19:04:58,680 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:05:10] 2025-11-20 19:04:58,680 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:05:10] 2025-11-20 19:05:02,715 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:05:10] 2025-11-20 19:05:03,722 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216358954816)>', '<ExcThread(monitor, started 140215775651584)>']
[2025-11-20 20:05:10] 2025-11-20 19:05:04,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:05:10] 2025-11-20 19:05:04,716 | INFO     | [monitor] control thread has ended
[2025-11-20 20:05:10] 2025-11-20 19:05:08,748 | INFO     | all workflow threads have been joined
[2025-11-20 20:05:10] 2025-11-20 19:05:08,748 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:05:10] 2025-11-20 19:05:08,748 | INFO     | traces error code: 0
[2025-11-20 20:05:10] 2025-11-20 19:05:08,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:05:10] 2025-11-20 19:05:09,039 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:05:10] 2025-11-20 19:05:09,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:05:10] 2025-11-20 19:05:09,179 [wrapper] pilotpid: 17938
[2025-11-20 20:05:10] 2025-11-20 19:05:09,208 [wrapper] Pilot exit status: 0
[2025-11-20 20:05:10] 2025-11-20 19:05:09,560 [wrapper] pandaids: 6891565349
[2025-11-20 20:05:10] 2025-11-20 19:05:09,724 [wrapper] cleanup supervisor_pilot 19318 17939
[2025-11-20 20:05:10] 2025-11-20 19:05:09,749 [wrapper] Test setup, not cleaning
[2025-11-20 20:05:10] 2025-11-20 19:05:09,763 [wrapper] apfmon messages muted
[2025-11-20 20:05:10] 2025-11-20 19:05:09,771 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:05:10] 2025-11-20 19:05:09,774 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:05:10]  *** Error codes and diagnostics ***
[2025-11-20 20:05:10]     "exeErrorCode": 0,
[2025-11-20 20:05:10]     "exeErrorDiag": "",
[2025-11-20 20:05:10]     "pilotErrorCode": 0,
[2025-11-20 20:05:10]     "pilotErrorDiag": "",
[2025-11-20 20:05:10]  *** Listing of results directory ***
[2025-11-20 20:05:10] total 1321832
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-20 20:05:10] -rwx------. 1 boinc boinc     36292 Nov 18 16:30 runpilot2-wrapper.sh
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:05:10] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:30 run_atlas
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:30 job.xml
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc      6391 Nov 19 18:30 init_data.xml
[2025-11-20 20:05:10] -rw-r--r--. 2 boinc boinc 408590684 Nov 19 18:30 EVNT.47493065._000146.pool.root.1
[2025-11-20 20:05:10] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:30 start_atlas.sh
[2025-11-20 20:05:10] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:30 shared
[2025-11-20 20:05:10] -rw-r--r--. 2 boinc boinc    590101 Nov 19 18:30 input.tar.gz
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:30 boinc_lockfile
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc      2773 Nov 19 18:30 pandaJob.out
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc    989434 Nov 19 18:34 agis_schedconf.cvmfs.json
[2025-11-20 20:05:10] drwx------. 5 boinc boinc      4096 Nov 19 18:34 pilot3
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:45 boinc_task_state.xml
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc 911523682 Nov 20 20:03 HITS.47493068._001453.pool.root.1
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc      1032 Nov 20 20:04 memory_monitor_summary.json
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc   1526164 Nov 20 20:04 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc   2562908 Nov 20 20:04 log.47493068._001453.job.log.tgz.1
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc      8635 Nov 20 20:04 heartbeat.json
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc        95 Nov 20 20:04 pilot_heartbeat.json
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:05 wrapper_checkpoint.txt
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:05 boinc_mmap_file
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc      5070 Nov 20 20:05 pilotlog.txt
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc  12204287 Nov 20 20:05 log.47493068._001453.job.log.1
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc       353 Nov 20 20:05 output.list
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:05 runtime_log
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc  14786560 Nov 20 20:05 result.tar.gz
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc       662 Nov 20 20:05 YDPMDmWqcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8SFKDmS3e0um.diag
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc      8703 Nov 20 20:05 runtime_log.err
[2025-11-20 20:05:10] -rw-r--r--. 1 boinc boinc     21194 Nov 20 20:05 stderr.txt
[2025-11-20 20:05:10] HITS file was successfully produced:
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc 911523682 Nov 20 20:03 shared/HITS.pool.root.1
[2025-11-20 20:05:10]  *** Contents of shared directory: ***
[2025-11-20 20:05:10] total 1304212
[2025-11-20 20:05:10] -rw-r--r--. 2 boinc boinc 408590684 Nov 19 18:30 ATLAS.root_0
[2025-11-20 20:05:10] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:30 start_atlas.sh
[2025-11-20 20:05:10] -rw-r--r--. 2 boinc boinc    590101 Nov 19 18:30 input.tar.gz
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc 911523682 Nov 20 20:03 HITS.pool.root.1
[2025-11-20 20:05:10] -rw-------. 1 boinc boinc  14786560 Nov 20 20:05 result.tar.gz
20:05:11 (14122): run_atlas exited; CPU time 339554.804521
20:05:11 (14122): called boinc_finish(0)

</stderr_txt>
]]>

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