Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:01:45 (9888): wrapper (7.7.26015): starting
20:01:45 (9888): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 20:01:45] Arguments: --nthreads 8
[2025-11-19 20:01:45] Threads: 8
[2025-11-19 20:01:45] Checking for CVMFS
[2025-11-19 20:01:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 20:01:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 20:01:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 20:01:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 20:01:49] 2.11.2.0 4554 275688 142576 153053 3 75 15686445 25165824 4632 130560 2 121192107 99.847 82595459 3280 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 20:01:49] CVMFS is ok
[2025-11-19 20:01:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 20:01:49] Checking for apptainer binary...
[2025-11-19 20:01:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 20:01:49] Running /usr/bin/apptainer --version
[2025-11-19 20:01:49] apptainer version 1.3.2-1.el7
[2025-11-19 20:01:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 20:02:03] cg-vwn316.simple-grid.lan
[2025-11-19 20:02:03] apptainer works
[2025-11-19 20:02:03] Set ATHENA_PROC_NUMBER=8
[2025-11-19 20:02:03] Set ATHENA_CORE_NUMBER=8
[2025-11-19 20:02:03] Starting ATLAS job with PandaID=6891565187
[2025-11-19 20:02:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:50:12]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:50:12] 2025-11-20 20:49:24,729 | INFO     | time since job start (92581s) is within the limit (172800.0s)
[2025-11-20 21:50:12] 2025-11-20 20:49:26,023 | INFO     | monitor loop #6203: job 0:6891565187 is in state 'finished'
[2025-11-20 21:50:12] 2025-11-20 20:49:26,024 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:50:12] 2025-11-20 20:49:26,737 | INFO     | time since job start (92583s) is within the limit (172800.0s)
[2025-11-20 21:50:12] 2025-11-20 20:49:28,527 | INFO     | monitor loop #6204: job 0:6891565187 is in state 'finished'
[2025-11-20 21:50:12] 2025-11-20 20:49:28,528 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:50:12] 2025-11-20 20:49:28,744 | INFO     | time since job start (92585s) is within the limit (172800.0s)
[2025-11-20 21:50:12] 2025-11-20 20:49:29,881 | INFO     | PID=13697 has CPU usage=19.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 21:50:12] 2025-11-20 20:49:29,881 | INFO     | .. there are 9 such processes running
[2025-11-20 21:50:12] 2025-11-20 20:49:30,882 | INFO     | time since job start (92587s) is within the limit (172800.0s)
[2025-11-20 21:50:12] 2025-11-20 20:49:30,883 | INFO     | 92601s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 21:50:12] 2025-11-20 20:49:31,032 | INFO     | monitor loop #6205: job 0:6891565187 is in state 'finished'
[2025-11-20 21:50:12] 2025-11-20 20:49:31,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:50:12] 2025-11-20 20:49:32,890 | INFO     | time since job start (92589s) is within the limit (172800.0s)
[2025-11-20 21:50:12] 2025-11-20 20:49:33,170 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 21:50:12] 2025-11-20 20:49:33,171 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 21:50:12] 2025-11-20 20:49:33,173 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6891565187/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 21:50:12] 2025-11-20 20:49:33,174 | INFO     | extracted standard info from prmon json
[2025-11-20 21:50:12] 2025-11-20 20:49:33,174 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 21:50:12] 2025-11-20 20:49:33,174 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 21:50:12] 2025-11-20 20:49:33,205 | INFO     | fitting pss+swap vs Time
[2025-11-20 21:50:12] 2025-11-20 20:49:33,208 | INFO     | sum of square deviations: 1067601354875.1151
[2025-11-20 21:50:12] 2025-11-20 20:49:33,276 | INFO     | sum of deviations: 4591048950760.159
[2025-11-20 21:50:12] 2025-11-20 20:49:33,276 | INFO     | mean x: 1763625713.8437085
[2025-11-20 21:50:12] 2025-11-20 20:49:33,276 | INFO     | mean y: 2832790.5218543047
[2025-11-20 21:50:12] 2025-11-20 20:49:33,276 | INFO     | intersect: -7581357643.577909
[2025-11-20 21:50:12] 2025-11-20 20:49:33,278 | INFO     | chi2: 26.320106862521214
[2025-11-20 21:50:12] 2025-11-20 20:49:33,280 | INFO     | sum of square deviations: 1057031738313.558
[2025-11-20 21:50:12] 2025-11-20 20:49:33,344 | INFO     | sum of deviations: 5092848161099.421
[2025-11-20 21:50:12] 2025-11-20 20:49:33,344 | INFO     | mean x: 1763625561.3481727
[2025-11-20 21:50:12] 2025-11-20 20:49:33,344 | INFO     | mean y: 2840029.86179402
[2025-11-20 21:50:12] 2025-11-20 20:49:33,344 | INFO     | intersect: -8494423459.416321
[2025-11-20 21:50:12] 2025-11-20 20:49:33,346 | INFO     | chi2: 23.09043958616747
[2025-11-20 21:50:12] 2025-11-20 20:49:33,346 | INFO     | current chi2=23.09043958616747 (change=12.27072250589021 %)
[2025-11-20 21:50:12] 2025-11-20 20:49:33,346 | INFO     | right removable region: 1504
[2025-11-20 21:50:12] 2025-11-20 20:49:33,348 | INFO     | sum of square deviations: 1057030500623.5564
[2025-11-20 21:50:12] 2025-11-20 20:49:33,413 | INFO     | sum of deviations: 3948531340115.2183
[2025-11-20 21:50:12] 2025-11-20 20:49:33,413 | INFO     | mean x: 1763625866.3481727
[2025-11-20 21:50:12] 2025-11-20 20:49:33,414 | INFO     | mean y: 2842059.7362126247
[2025-11-20 21:50:12] 2025-11-20 20:49:33,414 | INFO     | intersect: -6585172194.7300625
[2025-11-20 21:50:12] 2025-11-20 20:49:33,415 | INFO     | chi2: 21.36250940108208
[2025-11-20 21:50:12] 2025-11-20 20:49:33,416 | INFO     | current chi2=21.36250940108208 (change=18.835780140765905 %)
[2025-11-20 21:50:12] 2025-11-20 20:49:33,416 | INFO     | left removable region: 10
[2025-11-20 21:50:12] 2025-11-20 20:49:33,418 | INFO     | sum of square deviations: 1034022183669.9171
[2025-11-20 21:50:12] 2025-11-20 20:49:33,476 | INFO     | sum of deviations: 4002606324894.0723
[2025-11-20 21:50:12] 2025-11-20 20:49:33,477 | INFO     | mean x: 1763625835.858099
[2025-11-20 21:50:12] 2025-11-20 20:49:33,477 | INFO     | mean y: 2859532.844712182
[2025-11-20 21:50:12] 2025-11-20 20:49:33,477 | INFO     | intersect: -6823976522.353155
[2025-11-20 21:50:12] 2025-11-20 20:49:33,479 | INFO     | chi2: 13.33371727628431
[2025-11-20 21:50:12] 2025-11-20 20:49:33,479 | INFO     | current memory leak: 3.87 B/s (using 1494 data points, chi2=13.33)
[2025-11-20 21:50:12] 2025-11-20 20:49:33,481 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | ..............................
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | . Timing measurements:
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | . get job = 0 s
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | . initial setup = 13 s
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | . payload setup = 179 s
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | . stage-in = 0 s
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | . payload execution = 92209 s
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | . stage-out = 4 s
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | . log creation = 1 s
[2025-11-20 21:50:12] 2025-11-20 20:49:33,482 | INFO     | ..............................
[2025-11-20 21:50:12] 2025-11-20 20:49:33,619 | INFO     | 
[2025-11-20 21:50:12] 2025-11-20 20:49:33,620 | INFO     | job summary report
[2025-11-20 21:50:12] 2025-11-20 20:49:33,620 | INFO     | --------------------------------------------------
[2025-11-20 21:50:12] 2025-11-20 20:49:33,620 | INFO     | PanDA job id: 6891565187
[2025-11-20 21:50:12] 2025-11-20 20:49:33,620 | INFO     | task id: 47493068
[2025-11-20 21:50:12] 2025-11-20 20:49:33,620 | INFO     | errors: (none)
[2025-11-20 21:50:12] 2025-11-20 20:49:33,620 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | pilot state: finished 
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | transexitcode: 0
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | exeerrorcode: 0
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | exeerrordiag: 
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | exitcode: 0
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | exitmsg: OK
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | cpuconsumptiontime: 338223 s
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | nevents: 1000
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | neventsw: 0
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | pid: 20287
[2025-11-20 21:50:12] 2025-11-20 20:49:33,621 | INFO     | pgrp: 20287
[2025-11-20 21:50:12] 2025-11-20 20:49:33,622 | INFO     | corecount: 8
[2025-11-20 21:50:12] 2025-11-20 20:49:33,622 | INFO     | event service: False
[2025-11-20 21:50:12] 2025-11-20 20:49:33,622 | INFO     | sizes: {0: 2296973, 1: 2297057, 2: 2297256, 12: 2297256, 23: 2297284, 34: 2297312, 45: 2297468, 55: 2297496, 66: 2297524, 77: 2297552, 85: 2297870, 88: 2298178, 92
[2025-11-20 21:50:12] 2025-11-20 20:49:33,622 | INFO     | --------------------------------------------------
[2025-11-20 21:50:12] 2025-11-20 20:49:33,622 | INFO     | 
[2025-11-20 21:50:12] 2025-11-20 20:49:33,622 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-20 21:50:12] 2025-11-20 20:49:33,743 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,743 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,743 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,743 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,743 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,744 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,745 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 21:50:12] 2025-11-20 20:49:33,745 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,745 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 21:50:12] 2025-11-20 20:49:33,745 | INFO     | job 6891565187 has completed (purged errors)
[2025-11-20 21:50:12] 2025-11-20 20:49:33,745 | INFO     | overall cleanup function is called
[2025-11-20 21:50:12] 2025-11-20 20:49:34,761 | INFO     | --- collectZombieJob: --- 10, [20287]
[2025-11-20 21:50:12] 2025-11-20 20:49:34,762 | INFO     | zombie collector waiting for pid 20287
[2025-11-20 21:50:12] 2025-11-20 20:49:34,762 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 21:50:12] 2025-11-20 20:49:34,762 | INFO     | collected zombie processes
[2025-11-20 21:50:12] 2025-11-20 20:49:34,762 | INFO     | will attempt to kill all subprocesses of pid=20287
[2025-11-20 21:50:12] 2025-11-20 20:49:34,874 | INFO     | process IDs to be killed: [20287] (in reverse order)
[2025-11-20 21:50:12] 2025-11-20 20:49:34,973 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 21:50:12] 2025-11-20 20:49:34,973 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 21:50:12] 2025-11-20 20:49:34,977 | INFO     | did not find any defunct processes belonging to 20287
[2025-11-20 21:50:12] 2025-11-20 20:49:34,980 | INFO     | did not find any defunct processes belonging to 20287
[2025-11-20 21:50:12] 2025-11-20 20:49:34,983 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 21:50:12] 2025-11-20 20:49:34,983 | INFO     | ready for new job
[2025-11-20 21:50:12] 2025-11-20 20:49:34,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 21:50:12] 2025-11-20 20:49:34,991 | INFO     | ***************************************
[2025-11-20 21:50:12] 2025-11-20 20:49:34,991 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 21:50:12] 2025-11-20 20:49:34,991 | INFO     | ***************************************
[2025-11-20 21:50:12] 2025-11-20 20:49:34,992 | INFO     | 
[2025-11-20 21:50:12] 2025-11-20 20:49:34,992 | INFO     | pilot is running in a VM
[2025-11-20 21:50:12] 2025-11-20 20:49:34,993 | INFO     | architecture information:
[2025-11-20 21:50:12] 2025-11-20 20:49:34,993 | INFO     | executing command: cat /etc/os-release
[2025-11-20 21:50:12] 2025-11-20 20:49:35,045 | INFO     | cat /etc/os-release:
[2025-11-20 21:50:12] NAME="CentOS Linux"
[2025-11-20 21:50:12] VERSION="7 (Core)"
[2025-11-20 21:50:12] ID="centos"
[2025-11-20 21:50:12] ID_LIKE="rhel fedora"
[2025-11-20 21:50:12] VERSION_ID="7"
[2025-11-20 21:50:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 21:50:12] ANSI_COLOR="0;31"
[2025-11-20 21:50:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 21:50:12] HOME_URL="https://www.centos.org/"
[2025-11-20 21:50:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 21:50:12] 
[2025-11-20 21:50:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 21:50:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 21:50:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 21:50:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 21:50:12] 
[2025-11-20 21:50:12] 2025-11-20 20:49:35,045 | INFO     | ***************************************
[2025-11-20 21:50:12] 2025-11-20 20:49:35,549 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-20 21:50:12] 2025-11-20 20:49:35,594 | INFO     | sufficient remaining disk space (494634270720 B)
[2025-11-20 21:50:12] 2025-11-20 20:49:35,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 21:50:12] 2025-11-20 20:49:35,595 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 21:50:12] 2025-11-20 20:49:35,595 | INFO     | update_server=False
[2025-11-20 21:50:12] 2025-11-20 20:49:35,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 21:50:12] 2025-11-20 20:49:35,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:50:12] 2025-11-20 20:49:35,624 | INFO     | all data control threads have been joined
[2025-11-20 21:50:12] 2025-11-20 20:49:35,824 | INFO     | all job control threads have been joined
[2025-11-20 21:50:12] 2025-11-20 20:49:36,057 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 21:50:12] 2025-11-20 20:49:36,058 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 21:50:12] 2025-11-20 20:49:36,058 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:50:12] 2025-11-20 20:49:36,058 | INFO     | will abort loop
[2025-11-20 21:50:12] 2025-11-20 20:49:36,601 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:36,602 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:36,631 | INFO     | [data] control thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:36,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:50:12] 2025-11-20 20:49:36,829 | INFO     | [job] control thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:36,875 | INFO     | [job] validate thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:36,908 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:36,973 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:36,994 | INFO     | all payload control threads have been joined
[2025-11-20 21:50:12] 2025-11-20 20:49:37,064 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:37,391 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:37,478 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:37,603 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:37,862 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:38,000 | INFO     | [payload] control thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:38,014 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:38,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:50:12] 2025-11-20 20:49:38,687 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:49:42,312 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:50:12] 2025-11-20 20:50:04,657 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:50:12] 2025-11-20 20:50:06,123 | INFO     | PID=13697 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 21:50:12] 2025-11-20 20:50:06,123 | INFO     | .. there are 9 such processes running
[2025-11-20 21:50:12] 2025-11-20 20:50:06,124 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:50:12] 2025-11-20 20:50:06,124 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:50:12] 2025-11-20 20:50:06,124 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:50:12] 2025-11-20 20:50:06,198 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140602212779840)>', '<ExcThread(monitor, started 140601760659200)>']
[2025-11-20 21:50:12] 2025-11-20 20:50:07,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:50:12] 2025-11-20 20:50:07,131 | INFO     | [monitor] control thread has ended
[2025-11-20 21:50:12] 2025-11-20 20:50:11,223 | INFO     | all workflow threads have been joined
[2025-11-20 21:50:12] 2025-11-20 20:50:11,224 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:50:12] 2025-11-20 20:50:11,224 | INFO     | traces error code: 0
[2025-11-20 21:50:12] 2025-11-20 20:50:11,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:50:12] 2025-11-20 20:50:11,479 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:50:12] 2025-11-20 20:50:11,540 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:50:12] 2025-11-20 20:50:11,550 [wrapper] pilotpid: 13697
[2025-11-20 21:50:12] 2025-11-20 20:50:11,568 [wrapper] Pilot exit status: 0
[2025-11-20 21:50:12] 2025-11-20 20:50:11,651 [wrapper] pandaids: 6891565187
[2025-11-20 21:50:12] 2025-11-20 20:50:11,703 [wrapper] cleanup supervisor_pilot 18084 13698
[2025-11-20 21:50:12] 2025-11-20 20:50:11,722 [wrapper] Test setup, not cleaning
[2025-11-20 21:50:12] 2025-11-20 20:50:11,726 [wrapper] apfmon messages muted
[2025-11-20 21:50:12] 2025-11-20 20:50:11,731 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:50:12] 2025-11-20 20:50:11,736 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:50:12]  *** Error codes and diagnostics ***
[2025-11-20 21:50:12]     "exeErrorCode": 0,
[2025-11-20 21:50:12]     "exeErrorDiag": "",
[2025-11-20 21:50:12]     "pilotErrorCode": 0,
[2025-11-20 21:50:12]     "pilotErrorDiag": "",
[2025-11-20 21:50:12]  *** Listing of results directory ***
[2025-11-20 21:50:12] total 1325392
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-20 21:50:12] -rwx------. 1 boinc boinc     36292 Nov 18 16:30 runpilot2-wrapper.sh
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc       100 Nov 19 20:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:50:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 20:01 run_atlas
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc       105 Nov 19 20:01 job.xml
[2025-11-20 21:50:12] -rw-r--r--. 2 boinc boinc 409831024 Nov 19 20:01 EVNT.47493065._000138.pool.root.1
[2025-11-20 21:50:12] drwxrwx--x. 2 boinc boinc        68 Nov 19 20:01 shared
[2025-11-20 21:50:12] -rw-r--r--. 2 boinc boinc    590095 Nov 19 20:01 input.tar.gz
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc      6391 Nov 19 20:01 init_data.xml
[2025-11-20 21:50:12] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:01 start_atlas.sh
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc         0 Nov 19 20:01 boinc_lockfile
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc      2773 Nov 19 20:02 pandaJob.out
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc    989434 Nov 19 20:06 agis_schedconf.cvmfs.json
[2025-11-20 21:50:12] drwx------. 5 boinc boinc      4096 Nov 19 20:06 pilot3
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc       533 Nov 20 21:25 boinc_task_state.xml
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc 913520045 Nov 20 21:48 HITS.47493068._001374.pool.root.1
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc      1032 Nov 20 21:49 memory_monitor_summary.json
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc   1526164 Nov 20 21:49 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc   2592681 Nov 20 21:49 log.47493068._001374.job.log.tgz.1
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc      8638 Nov 20 21:49 heartbeat.json
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc        95 Nov 20 21:50 pilot_heartbeat.json
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc      5070 Nov 20 21:50 pilotlog.txt
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc  12378892 Nov 20 21:50 log.47493068._001374.job.log.1
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc       353 Nov 20 21:50 output.list
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc       620 Nov 20 21:50 runtime_log
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc  14991360 Nov 20 21:50 result.tar.gz
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc       662 Nov 20 21:50 zEsLDmWqcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiSFKDm670fjn.diag
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc      8703 Nov 20 21:50 runtime_log.err
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc      8192 Nov 20 21:50 boinc_mmap_file
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc        29 Nov 20 21:50 wrapper_checkpoint.txt
[2025-11-20 21:50:12] -rw-r--r--. 1 boinc boinc     21490 Nov 20 21:50 stderr.txt
[2025-11-20 21:50:12] HITS file was successfully produced:
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc 913520045 Nov 20 21:48 shared/HITS.pool.root.1
[2025-11-20 21:50:12]  *** Contents of shared directory: ***
[2025-11-20 21:50:12] total 1307576
[2025-11-20 21:50:12] -rw-r--r--. 2 boinc boinc 409831024 Nov 19 20:01 ATLAS.root_0
[2025-11-20 21:50:12] -rw-r--r--. 2 boinc boinc    590095 Nov 19 20:01 input.tar.gz
[2025-11-20 21:50:12] -rw-r--r--. 2 boinc boinc     15120 Nov 19 20:01 start_atlas.sh
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc 913520045 Nov 20 21:48 HITS.pool.root.1
[2025-11-20 21:50:12] -rw-------. 1 boinc boinc  14991360 Nov 20 21:50 result.tar.gz
21:50:14 (9888): run_atlas exited; CPU time 338732.256193
21:50:14 (9888): called boinc_finish(0)

</stderr_txt>
]]>

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