Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:44:46 (10026): wrapper (7.7.26015): starting
19:44:46 (10026): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 19:44:46] Arguments: --nthreads 8
[2025-11-20 19:44:46] Threads: 8
[2025-11-20 19:44:46] Checking for CVMFS
[2025-11-20 19:44:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 19:44:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 19:44:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 19:44:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 19:44:48] 2.11.2.0 26010 276979 143752 153088 1 294 18827270 25165824 4214 130560 3 136821715 99.885 73729379 2927 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 19:44:48] CVMFS is ok
[2025-11-20 19:44:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 19:44:49] Checking for apptainer binary...
[2025-11-20 19:44:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 19:44:49] Running /usr/bin/apptainer --version
[2025-11-20 19:44:49] apptainer version 1.3.2-1.el7
[2025-11-20 19:44:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 19:44:53] cg-vwn216.simple-grid.lan
[2025-11-20 19:44:53] apptainer works
[2025-11-20 19:44:53] Set ATHENA_PROC_NUMBER=8
[2025-11-20 19:44:53] Set ATHENA_CORE_NUMBER=8
[2025-11-20 19:44:53] Starting ATLAS job with PandaID=6891565731
[2025-11-20 19:44:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 20:36:51]  *** The last 200 lines of the pilot log: ***
[2025-11-21 20:36:51] 2025-11-21 19:35:53,804 | INFO     | monitor loop #6014: job 0:6891565731 is in state 'finished'
[2025-11-21 20:36:51] 2025-11-21 19:35:53,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 20:36:51] 2025-11-21 19:35:54,058 | INFO     | time since job start (89265s) is within the limit (172800.0s)
[2025-11-21 20:36:51] 2025-11-21 19:35:56,070 | INFO     | time since job start (89267s) is within the limit (172800.0s)
[2025-11-21 20:36:51] 2025-11-21 19:35:56,309 | INFO     | monitor loop #6015: job 0:6891565731 is in state 'finished'
[2025-11-21 20:36:51] 2025-11-21 19:35:56,309 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 20:36:51] 2025-11-21 19:35:58,077 | INFO     | time since job start (89269s) is within the limit (172800.0s)
[2025-11-21 20:36:51] 2025-11-21 19:35:58,814 | INFO     | monitor loop #6016: job 0:6891565731 is in state 'finished'
[2025-11-21 20:36:51] 2025-11-21 19:35:58,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 20:36:51] 2025-11-21 19:35:59,251 | INFO     | PID=13844 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 20:36:51] 2025-11-21 19:35:59,251 | INFO     | .. there are 9 such processes running
[2025-11-21 20:36:51] 2025-11-21 19:36:00,253 | INFO     | time since job start (89271s) is within the limit (172800.0s)
[2025-11-21 20:36:51] 2025-11-21 19:36:01,319 | INFO     | monitor loop #6017: job 0:6891565731 is in state 'finished'
[2025-11-21 20:36:51] 2025-11-21 19:36:01,319 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 20:36:51] 2025-11-21 19:36:02,263 | INFO     | time since job start (89273s) is within the limit (172800.0s)
[2025-11-21 20:36:51] 2025-11-21 19:36:03,402 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 20:36:51] 2025-11-21 19:36:03,403 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 20:36:51] 2025-11-21 19:36:03,405 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6891565731/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 20:36:51] 2025-11-21 19:36:03,406 | INFO     | extracted standard info from prmon json
[2025-11-21 20:36:51] 2025-11-21 19:36:03,407 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 20:36:51] 2025-11-21 19:36:03,407 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 20:36:51] 2025-11-21 19:36:03,452 | INFO     | fitting pss+swap vs Time
[2025-11-21 20:36:51] 2025-11-21 19:36:03,454 | INFO     | sum of square deviations: 955136083399.2987
[2025-11-21 20:36:51] 2025-11-21 19:36:03,541 | INFO     | sum of deviations: 863970470180.658
[2025-11-21 20:36:51] 2025-11-21 19:36:03,541 | INFO     | mean x: 1763709303.3814433
[2025-11-21 20:36:51] 2025-11-21 19:36:03,541 | INFO     | mean y: 2871174.6762886597
[2025-11-21 20:36:51] 2025-11-21 19:36:03,541 | INFO     | intersect: -1592496001.3614302
[2025-11-21 20:36:51] 2025-11-21 19:36:03,543 | INFO     | chi2: 18.754332010385152
[2025-11-21 20:36:51] 2025-11-21 19:36:03,546 | INFO     | sum of square deviations: 945323684542.2245
[2025-11-21 20:36:51] 2025-11-21 19:36:03,615 | INFO     | sum of deviations: 1348430947159.9026
[2025-11-21 20:36:51] 2025-11-21 19:36:03,615 | INFO     | mean x: 1763709150.8862069
[2025-11-21 20:36:51] 2025-11-21 19:36:03,615 | INFO     | mean y: 2878702.290344828
[2025-11-21 20:36:51] 2025-11-21 19:36:03,616 | INFO     | intersect: -2512915665.0069737
[2025-11-21 20:36:51] 2025-11-21 19:36:03,618 | INFO     | chi2: 15.524166444533286
[2025-11-21 20:36:51] 2025-11-21 19:36:03,618 | INFO     | current chi2=15.524166444533286 (change=17.223570341311927 %)
[2025-11-21 20:36:51] 2025-11-21 19:36:03,618 | INFO     | right removable region: 1449
[2025-11-21 20:36:51] 2025-11-21 19:36:03,620 | INFO     | sum of square deviations: 945322458442.2242
[2025-11-21 20:36:51] 2025-11-21 19:36:03,685 | INFO     | sum of deviations: 406823037104.04126
[2025-11-21 20:36:51] 2025-11-21 19:36:03,686 | INFO     | mean x: 1763709455.8862069
[2025-11-21 20:36:51] 2025-11-21 19:36:03,686 | INFO     | mean y: 2878275.4668965517
[2025-11-21 20:36:51] 2025-11-21 19:36:03,686 | INFO     | intersect: -756140650.8316747
[2025-11-21 20:36:51] 2025-11-21 19:36:03,688 | INFO     | chi2: 16.152707271828078
[2025-11-21 20:36:51] 2025-11-21 19:36:03,688 | INFO     | current chi2=16.152707271828078 (change=13.87212691508518 %)
[2025-11-21 20:36:51] 2025-11-21 19:36:03,688 | INFO     | left removable region: 10
[2025-11-21 20:36:51] 2025-11-21 19:36:03,690 | INFO     | sum of square deviations: 923971731888.7289
[2025-11-21 20:36:51] 2025-11-21 19:36:03,751 | INFO     | sum of deviations: 887293845888.4061
[2025-11-21 20:36:51] 2025-11-21 19:36:03,751 | INFO     | mean x: 1763709425.391244
[2025-11-21 20:36:51] 2025-11-21 19:36:03,751 | INFO     | mean y: 2889219.1751216124
[2025-11-21 20:36:51] 2025-11-21 19:36:03,752 | INFO     | intersect: -1690808179.8633668
[2025-11-21 20:36:51] 2025-11-21 19:36:03,754 | INFO     | chi2: 12.063227539342945
[2025-11-21 20:36:51] 2025-11-21 19:36:03,754 | INFO     | current memory leak: 0.96 B/s (using 1439 data points, chi2=12.06)
[2025-11-21 20:36:51] 2025-11-21 19:36:03,757 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-21 20:36:51] 2025-11-21 19:36:03,758 | INFO     | ..............................
[2025-11-21 20:36:51] 2025-11-21 19:36:03,758 | INFO     | . Timing measurements:
[2025-11-21 20:36:51] 2025-11-21 19:36:03,758 | INFO     | . get job = 0 s
[2025-11-21 20:36:51] 2025-11-21 19:36:03,758 | INFO     | . initial setup = 6 s
[2025-11-21 20:36:51] 2025-11-21 19:36:03,758 | INFO     | . payload setup = 139 s
[2025-11-21 20:36:51] 2025-11-21 19:36:03,758 | INFO     | . stage-in = 0 s
[2025-11-21 20:36:51] 2025-11-21 19:36:03,758 | INFO     | . payload execution = 88837 s
[2025-11-21 20:36:51] 2025-11-21 19:36:03,759 | INFO     | . stage-out = 6 s
[2025-11-21 20:36:51] 2025-11-21 19:36:03,759 | INFO     | . log creation = 2 s
[2025-11-21 20:36:51] 2025-11-21 19:36:03,759 | INFO     | ..............................
[2025-11-21 20:36:51] 2025-11-21 19:36:03,892 | INFO     | 
[2025-11-21 20:36:51] 2025-11-21 19:36:03,893 | INFO     | job summary report
[2025-11-21 20:36:51] 2025-11-21 19:36:03,893 | INFO     | --------------------------------------------------
[2025-11-21 20:36:51] 2025-11-21 19:36:03,893 | INFO     | PanDA job id: 6891565731
[2025-11-21 20:36:51] 2025-11-21 19:36:03,893 | INFO     | task id: 47493068
[2025-11-21 20:36:51] 2025-11-21 19:36:03,893 | INFO     | errors: (none)
[2025-11-21 20:36:51] 2025-11-21 19:36:03,893 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 20:36:51] 2025-11-21 19:36:03,893 | INFO     | pilot state: finished 
[2025-11-21 20:36:51] 2025-11-21 19:36:03,894 | INFO     | transexitcode: 0
[2025-11-21 20:36:51] 2025-11-21 19:36:03,894 | INFO     | exeerrorcode: 0
[2025-11-21 20:36:51] 2025-11-21 19:36:03,894 | INFO     | exeerrordiag: 
[2025-11-21 20:36:51] 2025-11-21 19:36:03,894 | INFO     | exitcode: 0
[2025-11-21 20:36:51] 2025-11-21 19:36:03,894 | INFO     | exitmsg: OK
[2025-11-21 20:36:51] 2025-11-21 19:36:03,894 | INFO     | cpuconsumptiontime: 336638 s
[2025-11-21 20:36:51] 2025-11-21 19:36:03,894 | INFO     | nevents: 1000
[2025-11-21 20:36:51] 2025-11-21 19:36:03,894 | INFO     | neventsw: 0
[2025-11-21 20:36:51] 2025-11-21 19:36:03,894 | INFO     | pid: 20476
[2025-11-21 20:36:51] 2025-11-21 19:36:03,895 | INFO     | pgrp: 20476
[2025-11-21 20:36:51] 2025-11-21 19:36:03,895 | INFO     | corecount: 8
[2025-11-21 20:36:51] 2025-11-21 19:36:03,895 | INFO     | event service: False
[2025-11-21 20:36:51] 2025-11-21 19:36:03,895 | INFO     | sizes: {0: 2298570, 1: 2298825, 2: 2298853, 12: 2298853, 23: 2298881, 34: 2298909, 45: 2299065, 55: 2299093, 66: 2299121, 77: 2299149, 88: 2299205, 96: 2299775, 98
[2025-11-21 20:36:51] 2025-11-21 19:36:03,895 | INFO     | --------------------------------------------------
[2025-11-21 20:36:51] 2025-11-21 19:36:03,895 | INFO     | 
[2025-11-21 20:36:51] 2025-11-21 19:36:03,895 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-11-21 20:36:51] 2025-11-21 19:36:04,274 | INFO     | time since job start (89275s) is within the limit (172800.0s)
[2025-11-21 20:36:51] 2025-11-21 19:36:04,518 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,519 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,519 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,519 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,520 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,520 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,520 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,520 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,520 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 20:36:51] 2025-11-21 19:36:04,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,521 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 20:36:51] 2025-11-21 19:36:04,521 | INFO     | job 6891565731 has completed (purged errors)
[2025-11-21 20:36:51] 2025-11-21 19:36:04,521 | INFO     | overall cleanup function is called
[2025-11-21 20:36:51] 2025-11-21 19:36:05,540 | INFO     | --- collectZombieJob: --- 10, [20476]
[2025-11-21 20:36:51] 2025-11-21 19:36:05,541 | INFO     | zombie collector waiting for pid 20476
[2025-11-21 20:36:51] 2025-11-21 19:36:05,541 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 20:36:51] 2025-11-21 19:36:05,541 | INFO     | collected zombie processes
[2025-11-21 20:36:51] 2025-11-21 19:36:05,541 | INFO     | will attempt to kill all subprocesses of pid=20476
[2025-11-21 20:36:51] 2025-11-21 19:36:05,663 | INFO     | process IDs to be killed: [20476] (in reverse order)
[2025-11-21 20:36:51] 2025-11-21 19:36:06,410 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 20:36:51] 2025-11-21 19:36:06,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 20:36:51] 2025-11-21 19:36:06,414 | INFO     | did not find any defunct processes belonging to 20476
[2025-11-21 20:36:51] 2025-11-21 19:36:06,417 | INFO     | did not find any defunct processes belonging to 20476
[2025-11-21 20:36:51] 2025-11-21 19:36:06,478 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 20:36:51] 2025-11-21 19:36:06,478 | INFO     | ready for new job
[2025-11-21 20:36:51] 2025-11-21 19:36:06,478 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 20:36:51] 2025-11-21 19:36:06,485 | INFO     | ***************************************
[2025-11-21 20:36:51] 2025-11-21 19:36:06,486 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 20:36:51] 2025-11-21 19:36:06,486 | INFO     | ***************************************
[2025-11-21 20:36:51] 2025-11-21 19:36:06,486 | INFO     | 
[2025-11-21 20:36:51] 2025-11-21 19:36:06,487 | INFO     | pilot is running in a VM
[2025-11-21 20:36:51] 2025-11-21 19:36:06,487 | INFO     | architecture information:
[2025-11-21 20:36:51] 2025-11-21 19:36:06,493 | INFO     | executing command: cat /etc/os-release
[2025-11-21 20:36:51] 2025-11-21 19:36:06,767 | INFO     | cat /etc/os-release:
[2025-11-21 20:36:51] NAME="CentOS Linux"
[2025-11-21 20:36:51] VERSION="7 (Core)"
[2025-11-21 20:36:51] ID="centos"
[2025-11-21 20:36:51] ID_LIKE="rhel fedora"
[2025-11-21 20:36:51] VERSION_ID="7"
[2025-11-21 20:36:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 20:36:51] ANSI_COLOR="0;31"
[2025-11-21 20:36:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 20:36:51] HOME_URL="https://www.centos.org/"
[2025-11-21 20:36:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 20:36:51] 
[2025-11-21 20:36:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 20:36:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 20:36:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 20:36:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 20:36:51] 
[2025-11-21 20:36:51] 2025-11-21 19:36:06,768 | INFO     | ***************************************
[2025-11-21 20:36:51] 2025-11-21 19:36:07,272 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-11-21 20:36:51] 2025-11-21 19:36:07,544 | INFO     | sufficient remaining disk space (494772682752 B)
[2025-11-21 20:36:51] 2025-11-21 19:36:07,545 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 20:36:51] 2025-11-21 19:36:07,545 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 20:36:51] 2025-11-21 19:36:07,545 | INFO     | update_server=False
[2025-11-21 20:36:51] 2025-11-21 19:36:07,545 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 20:36:51] 2025-11-21 19:36:07,547 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:36:51] 2025-11-21 19:36:07,547 | INFO     | aborting loop
[2025-11-21 20:36:51] 2025-11-21 19:36:07,668 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 20:36:51] 2025-11-21 19:36:07,806 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 20:36:51] 2025-11-21 19:36:08,354 | INFO     | all data control threads have been joined
[2025-11-21 20:36:51] 2025-11-21 19:36:08,390 | INFO     | all job control threads have been joined
[2025-11-21 20:36:51] 2025-11-21 19:36:08,545 | INFO     | all payload control threads have been joined
[2025-11-21 20:36:51] 2025-11-21 19:36:08,552 | INFO     | [job] retrieve thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:08,553 | INFO     | [job] job monitor thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:08,910 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:36:51] 2025-11-21 19:36:08,931 | INFO     | [payload] failed_post thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,045 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,050 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,084 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,191 | INFO     | [payload] validate_post thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,360 | INFO     | [data] control thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,397 | INFO     | [job] control thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,420 | INFO     | [data] copytool_in thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,420 | INFO     | [job] validate thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,551 | INFO     | [payload] control thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,675 | INFO     | [data] copytool_out thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,721 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:09,917 | INFO     | [job] queue monitor thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:11,815 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 20:36:51] 2025-11-21 19:36:37,469 | INFO     | PID=13844 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 20:36:51] 2025-11-21 19:36:37,470 | INFO     | .. there are 9 such processes running
[2025-11-21 20:36:51] 2025-11-21 19:36:37,470 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 20:36:51] 2025-11-21 19:36:37,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 20:36:51] 2025-11-21 19:36:37,470 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 20:36:51] 2025-11-21 19:36:44,406 | INFO     | [monitor] cgroup control has ended
[2025-11-21 20:36:51] 2025-11-21 19:36:46,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796834228032)>', '<ExcThread(monitor, started 139796403967744)>']
[2025-11-21 20:36:51] 2025-11-21 19:36:46,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 20:36:51] 2025-11-21 19:36:46,521 | INFO     | [monitor] control thread has ended
[2025-11-21 20:36:51] 2025-11-21 19:36:51,180 | INFO     | all workflow threads have been joined
[2025-11-21 20:36:51] 2025-11-21 19:36:51,181 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 20:36:51] 2025-11-21 19:36:51,181 | INFO     | traces error code: 0
[2025-11-21 20:36:51] 2025-11-21 19:36:51,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 20:36:51] 2025-11-21 19:36:51,541 [wrapper] ==== pilot stdout END ====
[2025-11-21 20:36:51] 2025-11-21 19:36:51,568 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 20:36:51] 2025-11-21 19:36:51,572 [wrapper] pilotpid: 13844
[2025-11-21 20:36:51] 2025-11-21 19:36:51,575 [wrapper] Pilot exit status: 0
[2025-11-21 20:36:51] 2025-11-21 19:36:51,597 [wrapper] pandaids: 6891565731
[2025-11-21 20:36:51] 2025-11-21 19:36:51,638 [wrapper] cleanup supervisor_pilot  3959 13845
[2025-11-21 20:36:51] 2025-11-21 19:36:51,644 [wrapper] Test setup, not cleaning
[2025-11-21 20:36:51] 2025-11-21 19:36:51,647 [wrapper] apfmon messages muted
[2025-11-21 20:36:51] 2025-11-21 19:36:51,651 [wrapper] ==== wrapper stdout END ====
[2025-11-21 20:36:51] 2025-11-21 19:36:51,654 [wrapper] ==== wrapper stderr END ====
[2025-11-21 20:36:51]  *** Error codes and diagnostics ***
[2025-11-21 20:36:51]     "exeErrorCode": 0,
[2025-11-21 20:36:51]     "exeErrorDiag": "",
[2025-11-21 20:36:51]     "pilotErrorCode": 0,
[2025-11-21 20:36:51]     "pilotErrorDiag": "",
[2025-11-21 20:36:51]  *** Listing of results directory ***
[2025-11-21 20:36:51] total 1321248
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-21 20:36:51] -rwx------. 1 boinc boinc     36292 Nov 18 16:30 runpilot2-wrapper.sh
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc       100 Nov 20 19:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 20:36:51] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 19:44 run_atlas
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc       105 Nov 20 19:44 job.xml
[2025-11-21 20:36:51] -rw-r--r--. 2 boinc boinc 406277313 Nov 20 19:44 EVNT.47493065._000152.pool.root.1
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc      6390 Nov 20 19:44 init_data.xml
[2025-11-21 20:36:51] -rw-r--r--. 2 boinc boinc     15120 Nov 20 19:44 start_atlas.sh
[2025-11-21 20:36:51] drwxrwx--x. 2 boinc boinc        68 Nov 20 19:44 shared
[2025-11-21 20:36:51] -rw-r--r--. 2 boinc boinc    590103 Nov 20 19:44 input.tar.gz
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc         0 Nov 20 19:44 boinc_lockfile
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc      2773 Nov 20 19:44 pandaJob.out
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc    989440 Nov 20 19:48 agis_schedconf.cvmfs.json
[2025-11-21 20:36:51] drwx------. 5 boinc boinc      4096 Nov 20 19:48 pilot3
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc       533 Nov 21 20:07 boinc_task_state.xml
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc 913867086 Nov 21 20:33 HITS.47493068._001519.pool.root.1
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc      1035 Nov 21 20:34 memory_monitor_summary.json
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc   1526164 Nov 21 20:34 agis_ddmendpoints.agis.ALL.json
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc   2540216 Nov 21 20:34 log.47493068._001519.job.log.tgz.1
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc        95 Nov 21 20:35 pilot_heartbeat.json
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc      8631 Nov 21 20:36 heartbeat.json
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc      8192 Nov 21 20:36 boinc_mmap_file
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc        29 Nov 21 20:36 wrapper_checkpoint.txt
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc      4885 Nov 21 20:36 pilotlog.txt
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc  11908424 Nov 21 20:36 log.47493068._001519.job.log.1
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc       353 Nov 21 20:36 output.list
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc       620 Nov 21 20:36 runtime_log
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc  14469120 Nov 21 20:36 result.tar.gz
[2025-11-21 20:36:51] -rw-------. 1 boinc boinc       662 Nov 21 20:36 Y7lNDmXqcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWGFKDmCqsBVn.diag
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc      8717 Nov 21 20:36 runtime_log.err
[2025-11-21 20:36:51] -rw-r--r--. 1 boinc boinc     21513 Nov 21 20:36 stderr.txt
[2025-11-21 20:36:52] HITS file was successfully produced:
[2025-11-21 20:36:52] -rw-------. 1 boinc boinc 913867086 Nov 21 20:33 shared/HITS.pool.root.1
[2025-11-21 20:36:52]  *** Contents of shared directory: ***
[2025-11-21 20:36:52] total 1303936
[2025-11-21 20:36:52] -rw-r--r--. 2 boinc boinc 406277313 Nov 20 19:44 ATLAS.root_0
[2025-11-21 20:36:52] -rw-r--r--. 2 boinc boinc     15120 Nov 20 19:44 start_atlas.sh
[2025-11-21 20:36:52] -rw-r--r--. 2 boinc boinc    590103 Nov 20 19:44 input.tar.gz
[2025-11-21 20:36:52] -rw-------. 1 boinc boinc 913867086 Nov 21 20:33 HITS.pool.root.1
[2025-11-21 20:36:52] -rw-------. 1 boinc boinc  14469120 Nov 21 20:36 result.tar.gz
20:36:53 (10026): run_atlas exited; CPU time 337047.681191
20:36:53 (10026): called boinc_finish(0)

</stderr_txt>
]]>

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