Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:35:54 (4581): wrapper (7.7.26015): starting
18:35:54 (4581): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:35:54] Arguments: --nthreads 8
[2025-11-19 18:35:54] Threads: 8
[2025-11-19 18:35:54] Checking for CVMFS
[2025-11-19 18:35:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:35:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:35:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:35:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:35:57] 2.11.2.0 24996 275458 142996 153052 0 128 22960774 25165824 3870 130560 3 131267074 99.888 70925413 3011 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:35:57] CVMFS is ok
[2025-11-19 18:35:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:35:57] Checking for apptainer binary...
[2025-11-19 18:35:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:35:57] Running /usr/bin/apptainer --version
[2025-11-19 18:35:57] apptainer version 1.3.2-1.el7
[2025-11-19 18:35:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:36:13] cg-vwn259.simple-grid.lan
[2025-11-19 18:36:13] apptainer works
[2025-11-19 18:36:13] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:36:13] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:36:13] Starting ATLAS job with PandaID=6891564407
[2025-11-19 18:36:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:46:56]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:46:56] 2025-11-20 18:45:53,175 | INFO     | fitting pss+swap vs Time
[2025-11-20 19:46:56] 2025-11-20 18:45:53,181 | INFO     | sum of square deviations: 986996297610.0991
[2025-11-20 19:46:56] 2025-11-20 18:45:53,247 | INFO     | sum of deviations: 4579176409599.963
[2025-11-20 19:46:56] 2025-11-20 18:45:53,247 | INFO     | mean x: 1763619381.174711
[2025-11-20 19:46:56] 2025-11-20 18:45:53,248 | INFO     | mean y: 2855710.735554045
[2025-11-20 19:46:56] 2025-11-20 18:45:53,248 | INFO     | intersect: -8179469071.37707
[2025-11-20 19:46:56] 2025-11-20 18:45:53,249 | INFO     | chi2: 16.903416057070054
[2025-11-20 19:46:56] 2025-11-20 18:45:53,252 | INFO     | sum of square deviations: 976966431925.6761
[2025-11-20 19:46:56] 2025-11-20 18:45:53,309 | INFO     | sum of deviations: 5064489226027.464
[2025-11-20 19:46:56] 2025-11-20 18:45:53,309 | INFO     | mean x: 1763619228.6787176
[2025-11-20 19:46:56] 2025-11-20 18:45:53,310 | INFO     | mean y: 2863088.6718963166
[2025-11-20 19:46:56] 2025-11-20 18:45:53,310 | INFO     | intersect: -9139549885.387924
[2025-11-20 19:46:56] 2025-11-20 18:45:53,311 | INFO     | chi2: 13.874694974029016
[2025-11-20 19:46:56] 2025-11-20 18:45:53,312 | INFO     | current chi2=13.874694974029016 (change=17.917804737310714 %)
[2025-11-20 19:46:56] 2025-11-20 18:45:53,312 | INFO     | right removable region: 1465
[2025-11-20 19:46:56] 2025-11-20 18:45:53,314 | INFO     | sum of square deviations: 976965377845.6774
[2025-11-20 19:46:56] 2025-11-20 18:45:53,378 | INFO     | sum of deviations: 3956444994658.573
[2025-11-20 19:46:56] 2025-11-20 18:45:53,379 | INFO     | mean x: 1763619533.6787176
[2025-11-20 19:46:56] 2025-11-20 18:45:53,379 | INFO     | mean y: 2865177.8738062754
[2025-11-20 19:46:56] 2025-11-20 18:45:53,379 | INFO     | intersect: -7139315942.087489
[2025-11-20 19:46:56] 2025-11-20 18:45:53,381 | INFO     | chi2: 12.062572672468958
[2025-11-20 19:46:56] 2025-11-20 18:45:53,381 | INFO     | current chi2=12.062572672468958 (change=28.638254943599733 %)
[2025-11-20 19:46:56] 2025-11-20 18:45:53,383 | INFO     | sum of square deviations: 967002645406.2058
[2025-11-20 19:46:56] 2025-11-20 18:45:53,441 | INFO     | sum of deviations: 3411702843473.5576
[2025-11-20 19:46:56] 2025-11-20 18:45:53,441 | INFO     | mean x: 1763619686.1827517
[2025-11-20 19:46:56] 2025-11-20 18:45:53,441 | INFO     | mean y: 2873515.855578371
[2025-11-20 19:46:56] 2025-11-20 18:45:53,442 | INFO     | intersect: -6219391052.643215
[2025-11-20 19:46:56] 2025-11-20 18:45:53,443 | INFO     | chi2: 8.486611426604718
[2025-11-20 19:46:56] 2025-11-20 18:45:53,443 | INFO     | current chi2=8.486611426604718 (change=29.64509597547001 %)
[2025-11-20 19:46:56] 2025-11-20 18:45:53,446 | INFO     | sum of square deviations: 957107867729.1868
[2025-11-20 19:46:56] 2025-11-20 18:45:53,511 | INFO     | sum of deviations: 2943072875897.7266
[2025-11-20 19:46:56] 2025-11-20 18:45:53,512 | INFO     | mean x: 1763619838.686813
[2025-11-20 19:46:56] 2025-11-20 18:45:53,512 | INFO     | mean y: 2880736.7252747254
[2025-11-20 19:46:56] 2025-11-20 18:45:53,512 | INFO     | intersect: -5420187953.483133
[2025-11-20 19:46:56] 2025-11-20 18:45:53,514 | INFO     | chi2: 5.874656063567872
[2025-11-20 19:46:56] 2025-11-20 18:45:53,514 | INFO     | current chi2=5.874656063567872 (change=30.777364860238738 %)
[2025-11-20 19:46:56] 2025-11-20 18:45:53,516 | INFO     | sum of square deviations: 947281167277.6359
[2025-11-20 19:46:56] 2025-11-20 18:45:53,589 | INFO     | sum of deviations: 2795662496138.589
[2025-11-20 19:46:56] 2025-11-20 18:45:53,590 | INFO     | mean x: 1763619991.188146
[2025-11-20 19:46:56] 2025-11-20 18:45:53,590 | INFO     | mean y: 2883022.4410751206
[2025-11-20 19:46:56] 2025-11-20 18:45:53,590 | INFO     | intersect: -5201998523.947682
[2025-11-20 19:46:56] 2025-11-20 18:45:53,592 | INFO     | chi2: 5.6014660343201435
[2025-11-20 19:46:56] 2025-11-20 18:45:53,593 | INFO     | current chi2=5.6014660343201435 (change=4.650315291510206 %)
[2025-11-20 19:46:56] 2025-11-20 18:45:53,593 | INFO     | left removable region: 40
[2025-11-20 19:46:56] 2025-11-20 18:45:53,595 | INFO     | sum of square deviations: 897266720824.6975
[2025-11-20 19:46:56] 2025-11-20 18:45:53,664 | INFO     | sum of deviations: 3143627184331.359
[2025-11-20 19:46:56] 2025-11-20 18:45:53,665 | INFO     | mean x: 1763620418.1915789
[2025-11-20 19:46:56] 2025-11-20 18:45:53,665 | INFO     | mean y: 2896597.8301754384
[2025-11-20 19:46:56] 2025-11-20 18:45:53,665 | INFO     | intersect: -6176052159.316554
[2025-11-20 19:46:56] 2025-11-20 18:45:53,667 | INFO     | chi2: 1.5168904188282348
[2025-11-20 19:46:56] 2025-11-20 18:45:53,667 | INFO     | current memory leak: 3.50 B/s (using 1425 data points, chi2=1.52)
[2025-11-20 19:46:56] 2025-11-20 18:45:53,669 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | ..............................
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | . Timing measurements:
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | . get job = 0 s
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | . initial setup = 12 s
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | . payload setup = 171 s
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | . stage-in = 0 s
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | . payload execution = 89871 s
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | . stage-out = 5 s
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | . log creation = 1 s
[2025-11-20 19:46:56] 2025-11-20 18:45:53,670 | INFO     | ..............................
[2025-11-20 19:46:56] 2025-11-20 18:45:53,801 | INFO     | 
[2025-11-20 19:46:56] 2025-11-20 18:45:53,801 | INFO     | job summary report
[2025-11-20 19:46:56] 2025-11-20 18:45:53,801 | INFO     | --------------------------------------------------
[2025-11-20 19:46:56] 2025-11-20 18:45:53,801 | INFO     | PanDA job id: 6891564407
[2025-11-20 19:46:56] 2025-11-20 18:45:53,802 | INFO     | task id: 47493068
[2025-11-20 19:46:56] 2025-11-20 18:45:53,802 | INFO     | errors: (none)
[2025-11-20 19:46:56] 2025-11-20 18:45:53,802 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 19:46:56] 2025-11-20 18:45:53,802 | INFO     | pilot state: finished 
[2025-11-20 19:46:56] 2025-11-20 18:45:53,802 | INFO     | transexitcode: 0
[2025-11-20 19:46:56] 2025-11-20 18:45:53,802 | INFO     | exeerrorcode: 0
[2025-11-20 19:46:56] 2025-11-20 18:45:53,802 | INFO     | exeerrordiag: 
[2025-11-20 19:46:56] 2025-11-20 18:45:53,802 | INFO     | exitcode: 0
[2025-11-20 19:46:56] 2025-11-20 18:45:53,803 | INFO     | exitmsg: OK
[2025-11-20 19:46:56] 2025-11-20 18:45:53,803 | INFO     | cpuconsumptiontime: 335892 s
[2025-11-20 19:46:56] 2025-11-20 18:45:53,803 | INFO     | nevents: 1000
[2025-11-20 19:46:56] 2025-11-20 18:45:53,803 | INFO     | neventsw: 0
[2025-11-20 19:46:56] 2025-11-20 18:45:53,803 | INFO     | pid: 14949
[2025-11-20 19:46:56] 2025-11-20 18:45:53,803 | INFO     | pgrp: 14949
[2025-11-20 19:46:56] 2025-11-20 18:45:53,803 | INFO     | corecount: 8
[2025-11-20 19:46:56] 2025-11-20 18:45:53,803 | INFO     | event service: False
[2025-11-20 19:46:56] 2025-11-20 18:45:53,803 | INFO     | sizes: {0: 2296974, 1: 2297058, 2: 2297257, 13: 2297257, 23: 2297313, 34: 2297341, 45: 2297497, 56: 2297525, 67: 2297553, 77: 2297581, 88: 2297637, 99: 2297945, 10
[2025-11-20 19:46:56] 2025-11-20 18:45:53,804 | INFO     | --------------------------------------------------
[2025-11-20 19:46:56] 2025-11-20 18:45:53,804 | INFO     | 
[2025-11-20 19:46:56] 2025-11-20 18:45:53,804 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-11-20 19:46:56] 2025-11-20 18:45:54,028 | INFO     | time since job start (90346s) is within the limit (172800.0s)
[2025-11-20 19:46:56] 2025-11-20 18:45:54,277 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 19:46:56] 2025-11-20 18:45:54,279 | INFO     | job 6891564407 has completed (purged errors)
[2025-11-20 19:46:56] 2025-11-20 18:45:54,280 | INFO     | overall cleanup function is called
[2025-11-20 19:46:56] 2025-11-20 18:45:55,300 | INFO     | --- collectZombieJob: --- 10, [14949]
[2025-11-20 19:46:56] 2025-11-20 18:45:55,300 | INFO     | zombie collector waiting for pid 14949
[2025-11-20 19:46:56] 2025-11-20 18:45:55,300 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 19:46:56] 2025-11-20 18:45:55,300 | INFO     | collected zombie processes
[2025-11-20 19:46:56] 2025-11-20 18:45:55,300 | INFO     | will attempt to kill all subprocesses of pid=14949
[2025-11-20 19:46:56] 2025-11-20 18:45:55,432 | INFO     | process IDs to be killed: [14949] (in reverse order)
[2025-11-20 19:46:56] 2025-11-20 18:45:56,252 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 19:46:56] 2025-11-20 18:45:56,252 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 19:46:56] 2025-11-20 18:45:56,256 | INFO     | did not find any defunct processes belonging to 14949
[2025-11-20 19:46:56] 2025-11-20 18:45:56,259 | INFO     | did not find any defunct processes belonging to 14949
[2025-11-20 19:46:56] 2025-11-20 18:45:56,303 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 19:46:56] 2025-11-20 18:45:56,304 | INFO     | ready for new job
[2025-11-20 19:46:56] 2025-11-20 18:45:56,304 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 19:46:56] 2025-11-20 18:45:56,310 | INFO     | ***************************************
[2025-11-20 19:46:56] 2025-11-20 18:45:56,311 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 19:46:56] 2025-11-20 18:45:56,311 | INFO     | ***************************************
[2025-11-20 19:46:56] 2025-11-20 18:45:56,311 | INFO     | 
[2025-11-20 19:46:56] 2025-11-20 18:45:56,311 | INFO     | pilot is running in a VM
[2025-11-20 19:46:56] 2025-11-20 18:45:56,312 | INFO     | architecture information:
[2025-11-20 19:46:56] 2025-11-20 18:45:56,324 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:46:56] 2025-11-20 18:45:56,595 | INFO     | cat /etc/os-release:
[2025-11-20 19:46:56] NAME="CentOS Linux"
[2025-11-20 19:46:56] VERSION="7 (Core)"
[2025-11-20 19:46:56] ID="centos"
[2025-11-20 19:46:56] ID_LIKE="rhel fedora"
[2025-11-20 19:46:56] VERSION_ID="7"
[2025-11-20 19:46:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:46:56] ANSI_COLOR="0;31"
[2025-11-20 19:46:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:46:56] HOME_URL="https://www.centos.org/"
[2025-11-20 19:46:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:46:56] 
[2025-11-20 19:46:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:46:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:46:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:46:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:46:56] 
[2025-11-20 19:46:56] 2025-11-20 18:45:56,596 | INFO     | ***************************************
[2025-11-20 19:46:56] 2025-11-20 18:45:57,099 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-11-20 19:46:56] 2025-11-20 18:45:57,347 | INFO     | sufficient remaining disk space (493423165440 B)
[2025-11-20 19:46:56] 2025-11-20 18:45:57,347 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:46:56] 2025-11-20 18:45:57,347 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:46:56] 2025-11-20 18:45:57,347 | INFO     | update_server=False
[2025-11-20 19:46:56] 2025-11-20 18:45:57,348 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:46:56] 2025-11-20 18:45:57,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:46:56] 2025-11-20 18:45:58,005 | INFO     | all data control threads have been joined
[2025-11-20 19:46:56] 2025-11-20 18:45:58,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:46:56] 2025-11-20 18:45:58,012 | INFO     | aborting loop
[2025-11-20 19:46:56] 2025-11-20 18:45:58,254 | INFO     | all job control threads have been joined
[2025-11-20 19:46:56] 2025-11-20 18:45:58,262 | INFO     | all payload control threads have been joined
[2025-11-20 19:46:56] 2025-11-20 18:45:58,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:46:56] 2025-11-20 18:45:58,354 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:58,543 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:58,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:46:56] 2025-11-20 18:45:58,854 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,011 | INFO     | [data] control thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,018 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,134 | INFO     | [job] validate thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,260 | INFO     | [job] control thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,268 | INFO     | [payload] control thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,298 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,310 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,355 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,642 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,650 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,697 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:45:59,821 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:46:02,317 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:46:56] 2025-11-20 18:46:27,206 | INFO     | PID=8365 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 19:46:56] 2025-11-20 18:46:27,206 | INFO     | .. there are 9 such processes running
[2025-11-20 19:46:56] 2025-11-20 18:46:27,207 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:46:56] 2025-11-20 18:46:27,207 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:46:56] 2025-11-20 18:46:27,207 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:46:56] 2025-11-20 18:46:46,162 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:46:56] 2025-11-20 18:46:46,712 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140431145154368)>', '<ExcThread(monitor, started 140430691772160)>']
[2025-11-20 19:46:56] 2025-11-20 18:46:47,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:46:56] 2025-11-20 18:46:47,325 | INFO     | [monitor] control thread has ended
[2025-11-20 19:46:56] 2025-11-20 18:46:51,738 | INFO     | all workflow threads have been joined
[2025-11-20 19:46:56] 2025-11-20 18:46:51,738 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:46:56] 2025-11-20 18:46:51,738 | INFO     | traces error code: 0
[2025-11-20 19:46:56] 2025-11-20 18:46:51,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:46:56] 2025-11-20 18:46:52,040 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:46:56] 2025-11-20 18:46:52,138 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:46:56] 2025-11-20 18:46:52,205 [wrapper] pilotpid: 8365
[2025-11-20 19:46:56] 2025-11-20 18:46:52,262 [wrapper] Pilot exit status: 0
[2025-11-20 19:46:56] 2025-11-20 18:46:52,665 [wrapper] pandaids: 6891564407
[2025-11-20 19:46:56] 2025-11-20 18:46:53,749 [wrapper] cleanup supervisor_pilot 13686 8366
[2025-11-20 19:46:56] 2025-11-20 18:46:53,836 [wrapper] Test setup, not cleaning
[2025-11-20 19:46:56] 2025-11-20 18:46:53,877 [wrapper] apfmon messages muted
[2025-11-20 19:46:56] 2025-11-20 18:46:53,881 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:46:56] 2025-11-20 18:46:53,955 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:46:56]  *** Error codes and diagnostics ***
[2025-11-20 19:46:56]     "exeErrorCode": 0,
[2025-11-20 19:46:56]     "exeErrorDiag": "",
[2025-11-20 19:46:56]     "pilotErrorCode": 0,
[2025-11-20 19:46:56]     "pilotErrorDiag": "",
[2025-11-20 19:46:56]  *** Listing of results directory ***
[2025-11-20 19:46:56] total 1316624
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-20 19:46:56] -rwx------. 1 boinc boinc     36292 Nov 18 16:29 runpilot2-wrapper.sh
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:46:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:35 run_atlas
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:35 job.xml
[2025-11-20 19:46:56] -rw-r--r--. 2 boinc boinc 407782537 Nov 19 18:35 EVNT.47493065._000116.pool.root.1
[2025-11-20 19:46:56] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:35 shared
[2025-11-20 19:46:56] -rw-r--r--. 2 boinc boinc    590097 Nov 19 18:35 input.tar.gz
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc      6390 Nov 19 18:35 init_data.xml
[2025-11-20 19:46:56] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:35 start_atlas.sh
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:35 boinc_lockfile
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc      2773 Nov 19 18:36 pandaJob.out
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc    989434 Nov 19 18:39 agis_schedconf.cvmfs.json
[2025-11-20 19:46:56] drwx------. 5 boinc boinc      4096 Nov 19 18:40 pilot3
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:28 boinc_task_state.xml
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc 907334820 Nov 20 19:42 HITS.47493068._001152.pool.root.1
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc      1035 Nov 20 19:44 memory_monitor_summary.json
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc   1526164 Nov 20 19:44 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc   2545092 Nov 20 19:44 log.47493068._001152.job.log.tgz.1
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc        95 Nov 20 19:45 pilot_heartbeat.json
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc      8644 Nov 20 19:45 heartbeat.json
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc      4884 Nov 20 19:46 pilotlog.txt
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc      8192 Nov 20 19:46 boinc_mmap_file
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc        29 Nov 20 19:46 wrapper_checkpoint.txt
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc  12052349 Nov 20 19:46 log.47493068._001152.job.log.1
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc       353 Nov 20 19:46 output.list
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc       620 Nov 20 19:46 runtime_log
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc  14612480 Nov 20 19:46 result.tar.gz
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc       662 Nov 20 19:46 weZNDmXpcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCFFKDmDD7fPo.diag
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc      8717 Nov 20 19:46 runtime_log.err
[2025-11-20 19:46:56] -rw-r--r--. 1 boinc boinc     20848 Nov 20 19:46 stderr.txt
[2025-11-20 19:46:56] HITS file was successfully produced:
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc 907334820 Nov 20 19:42 shared/HITS.pool.root.1
[2025-11-20 19:46:56]  *** Contents of shared directory: ***
[2025-11-20 19:46:56] total 1299168
[2025-11-20 19:46:56] -rw-r--r--. 2 boinc boinc 407782537 Nov 19 18:35 ATLAS.root_0
[2025-11-20 19:46:56] -rw-r--r--. 2 boinc boinc    590097 Nov 19 18:35 input.tar.gz
[2025-11-20 19:46:56] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:35 start_atlas.sh
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc 907334820 Nov 20 19:42 HITS.pool.root.1
[2025-11-20 19:46:56] -rw-------. 1 boinc boinc  14612480 Nov 20 19:46 result.tar.gz
19:46:58 (4581): run_atlas exited; CPU time 336492.491780
19:46:58 (4581): called boinc_finish(0)

</stderr_txt>
]]>

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