Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:44 (1587499): wrapper (7.7.26015): starting
00:04:44 (1587499): wrapper: running run_atlas (--nthreads 9)
[2025-11-19 00:04:44] Arguments: --nthreads 9
[2025-11-19 00:04:44] Threads: 9
[2025-11-19 00:04:44] Checking for CVMFS
[2025-11-19 00:04:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:04:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:04:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:04:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:04:48] 2.13.2.0 40083 22291 199144 153030 2 385 31414415 39288832 8828 16776704 0 10820677 99.711 7776873 33221 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 00:04:48] CVMFS is ok
[2025-11-19 00:04:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:04:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:04:48] Further information can be found at the LHC@home message board.
[2025-11-19 00:04:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:04:48] Checking for apptainer binary...
[2025-11-19 00:04:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:04:48] Running /usr/bin/apptainer --version
[2025-11-19 00:04:48] apptainer version 1.4.4-1.el9
[2025-11-19 00:04:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:04:50] c-211-19.aglt2.org
[2025-11-19 00:04:50] apptainer works
[2025-11-19 00:04:50] Set ATHENA_PROC_NUMBER=9
[2025-11-19 00:04:50] Set ATHENA_CORE_NUMBER=9
[2025-11-19 00:04:50] Starting ATLAS job with PandaID=6891564392
[2025-11-19 00:04:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:46:17 (531805): wrapper (7.7.26015): starting
13:46:17 (531805): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 13:46:17] Arguments: --nthreads 12
[2025-11-20 13:46:17] Threads: 12
[2025-11-20 13:46:17] This job has been restarted, cleaning up previous attempt
[2025-11-20 13:46:18] Checking for CVMFS
[2025-11-20 13:46:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 13:46:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 13:46:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 13:46:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 13:46:20] 2.13.2.0 40083 24552 196692 153092 3 86 36114477 39288833 7250 16776704 0 13667204 99.738 8279543 32727 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 13:46:20] CVMFS is ok
[2025-11-20 13:46:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 13:46:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 13:46:20] Further information can be found at the LHC@home message board.
[2025-11-20 13:46:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 13:46:20] Checking for apptainer binary...
[2025-11-20 13:46:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 13:46:20] Running /usr/bin/apptainer --version
[2025-11-20 13:46:20] apptainer version 1.4.4-1.el9
[2025-11-20 13:46:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 13:46:20] c-211-19.aglt2.org
[2025-11-20 13:46:20] apptainer works
[2025-11-20 13:46:20] Set ATHENA_PROC_NUMBER=12
[2025-11-20 13:46:20] Set ATHENA_CORE_NUMBER=12
[2025-11-20 13:46:20] Starting ATLAS job with PandaID=6891564392
[2025-11-20 13:46:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:27:35 (835818): wrapper (7.7.26015): starting
17:27:35 (835818): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 17:27:35] Arguments: --nthreads 8
[2025-11-20 17:27:35] Threads: 8
[2025-11-20 17:27:35] This job has been restarted, cleaning up previous attempt
[2025-11-20 17:27:35] Checking for CVMFS
[2025-11-20 17:27:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:27:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:27:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:27:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:27:36] 2.13.2.0 40083 24773 202864 153098 2 76 36386557 39288833 6699 16776704 0 13956477 99.742 8287530 31466 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 17:27:36] CVMFS is ok
[2025-11-20 17:27:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:27:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:27:36] Further information can be found at the LHC@home message board.
[2025-11-20 17:27:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:27:36] Checking for apptainer binary...
[2025-11-20 17:27:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:27:36] Running /usr/bin/apptainer --version
[2025-11-20 17:27:36] apptainer version 1.4.4-1.el9
[2025-11-20 17:27:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:27:36] c-211-19.aglt2.org
[2025-11-20 17:27:36] apptainer works
[2025-11-20 17:27:36] Set ATHENA_PROC_NUMBER=8
[2025-11-20 17:27:36] Set ATHENA_CORE_NUMBER=8
[2025-11-20 17:27:36] Starting ATLAS job with PandaID=6891564392
[2025-11-20 17:27:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:53:18]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:53:38] 2025-11-22 04:51:55,141 | INFO     | time since job start (109446s) is within the limit (172800.0s)
[2025-11-21 23:53:38] 2025-11-22 04:51:56,200 | INFO     | monitor loop #6796: job 0:6891564392 is in state 'finished'
[2025-11-21 23:53:38] 2025-11-22 04:51:56,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:53:38] 2025-11-22 04:51:57,148 | INFO     | time since job start (109448s) is within the limit (172800.0s)
[2025-11-21 23:53:38] 2025-11-22 04:51:58,705 | INFO     | monitor loop #6797: job 0:6891564392 is in state 'finished'
[2025-11-21 23:53:38] 2025-11-22 04:51:58,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:53:38] 2025-11-22 04:51:59,179 | INFO     | time since job start (109450s) is within the limit (172800.0s)
[2025-11-21 23:53:38] 2025-11-22 04:52:01,186 | INFO     | time since job start (109452s) is within the limit (172800.0s)
[2025-11-21 23:53:38] 2025-11-22 04:52:01,258 | INFO     | monitor loop #6798: job 0:6891564392 is in state 'finished'
[2025-11-21 23:53:38] 2025-11-22 04:52:01,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:53:38] 2025-11-22 04:52:03,193 | INFO     | time since job start (109454s) is within the limit (172800.0s)
[2025-11-21 23:53:38] 2025-11-22 04:52:03,791 | INFO     | monitor loop #6799: job 0:6891564392 is in state 'finished'
[2025-11-21 23:53:38] 2025-11-22 04:52:03,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:53:38] 2025-11-22 04:52:04,706 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 23:53:38] 2025-11-22 04:52:04,740 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.9937000000004
[2025-11-21 23:53:38] 2025-11-22 04:52:04,780 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891564392/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 23:53:38] 2025-11-22 04:52:04,781 | INFO     | extracted standard info from prmon json
[2025-11-21 23:53:38] 2025-11-22 04:52:04,781 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 23:53:38] 2025-11-22 04:52:04,781 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 23:53:38] 2025-11-22 04:52:05,020 | INFO     | fitting pss+swap vs Time
[2025-11-21 23:53:38] 2025-11-22 04:52:05,040 | INFO     | sum of square deviations: 1787659259414.7974
[2025-11-21 23:53:38] 2025-11-22 04:52:05,212 | INFO     | time since job start (109456s) is within the limit (172800.0s)
[2025-11-21 23:53:38] 2025-11-22 04:52:05,639 | INFO     | sum of deviations: 1561927366076.726
[2025-11-21 23:53:38] 2025-11-22 04:52:05,639 | INFO     | mean x: 1763732357.0105968
[2025-11-21 23:53:38] 2025-11-22 04:52:05,640 | INFO     | mean y: 2971768.382598996
[2025-11-21 23:53:38] 2025-11-22 04:52:05,640 | INFO     | intersect: -1538050000.9179258
[2025-11-21 23:53:38] 2025-11-22 04:52:05,662 | INFO     | chi2: 25.811986218227055
[2025-11-21 23:53:38] 2025-11-22 04:52:05,665 | INFO     | sum of square deviations: 1772749282224.4302
[2025-11-21 23:53:38] 2025-11-22 04:52:06,231 | INFO     | sum of deviations: 2242577281015.852
[2025-11-21 23:53:38] 2025-11-22 04:52:06,231 | INFO     | mean x: 1763732204.5178971
[2025-11-21 23:53:38] 2025-11-22 04:52:06,231 | INFO     | mean y: 2978728.504474273
[2025-11-21 23:53:38] 2025-11-22 04:52:06,252 | INFO     | intersect: -2228191697.7414517
[2025-11-21 23:53:38] 2025-11-22 04:52:06,254 | INFO     | chi2: 21.86410859941609
[2025-11-21 23:53:38] 2025-11-22 04:52:06,255 | INFO     | current chi2=21.86410859941609 (change=15.29474557065733 %)
[2025-11-21 23:53:38] 2025-11-22 04:52:06,255 | INFO     | right removable region: 1787
[2025-11-21 23:53:38] 2025-11-22 04:52:06,282 | INFO     | sum of square deviations: 1772746316948.3901
[2025-11-21 23:53:38] 2025-11-22 04:52:06,338 | INFO     | monitor loop #6800: job 0:6891564392 is in state 'finished'
[2025-11-21 23:53:38] 2025-11-22 04:52:06,338 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 23:53:38] 2025-11-22 04:52:06,848 | INFO     | sum of deviations: 1044161093380.9519
[2025-11-21 23:53:38] 2025-11-22 04:52:06,857 | INFO     | mean x: 1763732509.5184565
[2025-11-21 23:53:38] 2025-11-22 04:52:06,857 | INFO     | mean y: 2977059.8199105146
[2025-11-21 23:53:38] 2025-11-22 04:52:06,857 | INFO     | intersect: -1035874832.2773707
[2025-11-21 23:53:38] 2025-11-22 04:52:06,860 | INFO     | chi2: 23.542311951468825
[2025-11-21 23:53:38] 2025-11-22 04:52:06,860 | INFO     | current chi2=23.542311951468825 (change=8.793101962666888 %)
[2025-11-21 23:53:38] 2025-11-22 04:52:06,860 | INFO     | left removable region: 10
[2025-11-21 23:53:38] 2025-11-22 04:52:06,871 | INFO     | sum of square deviations: 1740234183319.973
[2025-11-21 23:53:38] 2025-11-22 04:52:07,122 | INFO     | sum of deviations: 1679509698694.9917
[2025-11-21 23:53:38] 2025-11-22 04:52:07,125 | INFO     | mean x: 1763732479.0337648
[2025-11-21 23:53:38] 2025-11-22 04:52:07,125 | INFO     | mean y: 2986842.4001125493
[2025-11-21 23:53:38] 2025-11-22 04:52:07,125 | INFO     | intersect: -1699201192.3098774
[2025-11-21 23:53:38] 2025-11-22 04:52:07,128 | INFO     | chi2: 18.908768489464663
[2025-11-21 23:53:38] 2025-11-22 04:52:07,128 | INFO     | current memory leak: 0.97 B/s (using 1777 data points, chi2=18.91)
[2025-11-21 23:53:38] 2025-11-22 04:52:07,134 | INFO     | could have reported an average CPU frequency of 2900 MHz (63 samples)
[2025-11-21 23:53:38] 2025-11-22 04:52:07,134 | INFO     | ..............................
[2025-11-21 23:53:38] 2025-11-22 04:52:07,134 | INFO     | . Timing measurements:
[2025-11-21 23:53:38] 2025-11-22 04:52:07,135 | INFO     | . get job = 0 s
[2025-11-21 23:53:38] 2025-11-22 04:52:07,135 | INFO     | . initial setup = 2 s
[2025-11-21 23:53:38] 2025-11-22 04:52:07,135 | INFO     | . payload setup = 6 s
[2025-11-21 23:53:38] 2025-11-22 04:52:07,135 | INFO     | . stage-in = 0 s
[2025-11-21 23:53:38] 2025-11-22 04:52:07,135 | INFO     | . payload execution = 109361 s
[2025-11-21 23:53:38] 2025-11-22 04:52:07,135 | INFO     | . stage-out = 15 s
[2025-11-21 23:53:38] 2025-11-22 04:52:07,135 | INFO     | . log creation = 5 s
[2025-11-21 23:53:38] 2025-11-22 04:52:07,136 | INFO     | ..............................
[2025-11-21 23:53:38] 2025-11-22 04:52:07,344 | INFO     | time since job start (109458s) is within the limit (172800.0s)
[2025-11-21 23:53:38] 2025-11-22 04:52:08,250 | INFO     | 
[2025-11-21 23:53:38] 2025-11-22 04:52:08,259 | INFO     | job summary report
[2025-11-21 23:53:38] 2025-11-22 04:52:08,259 | INFO     | --------------------------------------------------
[2025-11-21 23:53:38] 2025-11-22 04:52:08,259 | INFO     | PanDA job id: 6891564392
[2025-11-21 23:53:38] 2025-11-22 04:52:08,259 | INFO     | task id: 47493068
[2025-11-21 23:53:38] 2025-11-22 04:52:08,260 | INFO     | errors: (none)
[2025-11-21 23:53:38] 2025-11-22 04:52:08,260 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:53:38] 2025-11-22 04:52:08,260 | INFO     | pilot state: finished 
[2025-11-21 23:53:38] 2025-11-22 04:52:08,260 | INFO     | transexitcode: 0
[2025-11-21 23:53:38] 2025-11-22 04:52:08,260 | INFO     | exeerrorcode: 0
[2025-11-21 23:53:38] 2025-11-22 04:52:08,260 | INFO     | exeerrordiag: 
[2025-11-21 23:53:38] 2025-11-22 04:52:08,260 | INFO     | exitcode: 0
[2025-11-21 23:53:38] 2025-11-22 04:52:08,261 | INFO     | exitmsg: OK
[2025-11-21 23:53:38] 2025-11-22 04:52:08,261 | INFO     | cpuconsumptiontime: 487750 s
[2025-11-21 23:53:38] 2025-11-22 04:52:08,261 | INFO     | nevents: 1000
[2025-11-21 23:53:38] 2025-11-22 04:52:08,261 | INFO     | neventsw: 0
[2025-11-21 23:53:38] 2025-11-22 04:52:08,261 | INFO     | pid: 857264
[2025-11-21 23:53:38] 2025-11-22 04:52:08,261 | INFO     | pgrp: 857264
[2025-11-21 23:53:38] 2025-11-22 04:52:08,261 | INFO     | corecount: 8
[2025-11-21 23:53:38] 2025-11-22 04:52:08,262 | INFO     | event service: False
[2025-11-21 23:53:38] 2025-11-22 04:52:08,262 | INFO     | sizes: {0: 2298569, 1: 2298824, 2: 2298824, 5: 2299114, 12: 2299170, 109369: 2374033, 109370: 2374160, 109386: 2383210, 109388: 2383266, 109442: 2383512}
[2025-11-21 23:53:38] 2025-11-22 04:52:08,262 | INFO     | --------------------------------------------------
[2025-11-21 23:53:38] 2025-11-22 04:52:08,262 | INFO     | 
[2025-11-21 23:53:38] 2025-11-22 04:52:08,262 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-21 23:53:38] 2025-11-22 04:52:08,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,512 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,513 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,513 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,513 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,513 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,513 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,513 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,513 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,514 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,514 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,514 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,514 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,514 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,514 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,514 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,515 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:53:38] 2025-11-22 04:52:08,515 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,515 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:53:38] 2025-11-22 04:52:08,515 | INFO     | job 6891564392 has completed (purged errors)
[2025-11-21 23:53:38] 2025-11-22 04:52:08,516 | INFO     | overall cleanup function is called
[2025-11-21 23:53:38] 2025-11-22 04:52:09,620 | INFO     | --- collectZombieJob: --- 10, [857264]
[2025-11-21 23:53:38] 2025-11-22 04:52:09,620 | INFO     | zombie collector waiting for pid 857264
[2025-11-21 23:53:38] 2025-11-22 04:52:09,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:53:38] 2025-11-22 04:52:09,620 | INFO     | collected zombie processes
[2025-11-21 23:53:38] 2025-11-22 04:52:09,620 | INFO     | will attempt to kill all subprocesses of pid=857264
[2025-11-21 23:53:38] 2025-11-22 04:52:13,237 | INFO     | process IDs to be killed: [857264] (in reverse order)
[2025-11-21 23:53:38] 2025-11-22 04:52:13,995 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:53:38] 2025-11-22 04:52:13,995 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:53:38] 2025-11-22 04:52:14,081 | INFO     | did not find any defunct processes belonging to 857264
[2025-11-21 23:53:38] 2025-11-22 04:52:14,154 | INFO     | did not find any defunct processes belonging to 857264
[2025-11-21 23:53:38] 2025-11-22 04:52:14,184 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:53:38] 2025-11-22 04:52:14,184 | INFO     | ready for new job
[2025-11-21 23:53:38] 2025-11-22 04:52:14,184 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:53:38] 2025-11-22 04:52:14,366 | INFO     | ***************************************
[2025-11-21 23:53:38] 2025-11-22 04:52:14,366 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:53:38] 2025-11-22 04:52:14,366 | INFO     | ***************************************
[2025-11-21 23:53:38] 2025-11-22 04:52:14,366 | INFO     | 
[2025-11-21 23:53:38] 2025-11-22 04:52:14,433 | INFO     | architecture information:
[2025-11-21 23:53:38] 2025-11-22 04:52:14,443 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:53:38] 2025-11-22 04:52:14,651 | INFO     | cat /etc/os-release:
[2025-11-21 23:53:38] NAME="CentOS Linux"
[2025-11-21 23:53:38] VERSION="7 (Core)"
[2025-11-21 23:53:38] ID="centos"
[2025-11-21 23:53:38] ID_LIKE="rhel fedora"
[2025-11-21 23:53:38] VERSION_ID="7"
[2025-11-21 23:53:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:53:38] ANSI_COLOR="0;31"
[2025-11-21 23:53:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:53:38] HOME_URL="https://www.centos.org/"
[2025-11-21 23:53:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:53:38] 
[2025-11-21 23:53:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:53:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:53:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:53:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:53:38] 
[2025-11-21 23:53:38] 2025-11-22 04:52:14,651 | INFO     | ***************************************
[2025-11-21 23:53:38] 2025-11-22 04:52:15,224 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-21 23:53:38] 2025-11-22 04:52:15,397 | INFO     | sufficient remaining disk space (46746566656 B)
[2025-11-21 23:53:38] 2025-11-22 04:52:15,398 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:53:38] 2025-11-22 04:52:15,398 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:53:38] 2025-11-22 04:52:15,398 | INFO     | update_server=False
[2025-11-21 23:53:38] 2025-11-22 04:52:15,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:53:38] 2025-11-22 04:52:15,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:53:38] 2025-11-22 04:52:15,421 | INFO     | aborting loop
[2025-11-21 23:53:38] 2025-11-22 04:52:15,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:53:38] 2025-11-22 04:52:15,807 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:53:38] 2025-11-22 04:52:16,248 | INFO     | all job control threads have been joined
[2025-11-21 23:53:38] 2025-11-22 04:52:16,404 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:16,427 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:16,472 | INFO     | all data control threads have been joined
[2025-11-21 23:53:38] 2025-11-22 04:52:16,647 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:16,673 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:16,925 | INFO     | all payload control threads have been joined
[2025-11-21 23:53:38] 2025-11-22 04:52:16,937 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:53:38] 2025-11-22 04:52:17,257 | INFO     | [job] control thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,324 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,334 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,478 | INFO     | [data] control thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,617 | INFO     | [job] validate thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,663 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,722 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,723 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,837 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,931 | INFO     | [payload] control thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:17,943 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:19,834 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:53:38] 2025-11-22 04:52:48,292 | INFO     | PID=843395 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 23:53:38] 2025-11-22 04:52:48,293 | INFO     | .. there are 10 such processes running
[2025-11-21 23:53:38] 2025-11-22 04:52:48,293 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:53:38] 2025-11-22 04:52:48,293 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:53:38] 2025-11-22 04:52:48,293 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:53:38] 2025-11-22 04:53:10,457 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:53:38] 2025-11-22 04:53:10,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140071363643200)>', '<ExcThread(monitor, started 140070862436096)>']
[2025-11-21 23:53:38] 2025-11-22 04:53:10,642 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:53:38] 2025-11-22 04:53:10,642 | INFO     | [monitor] control thread has ended
[2025-11-21 23:53:38] 2025-11-22 04:53:15,552 | INFO     | all workflow threads have been joined
[2025-11-21 23:53:38] 2025-11-22 04:53:15,552 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:53:38] 2025-11-22 04:53:15,552 | INFO     | traces error code: 0
[2025-11-21 23:53:38] 2025-11-22 04:53:15,553 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:53:38] 2025-11-22 04:53:16,012 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:53:38] 2025-11-22 04:53:16,052 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:53:38] 2025-11-22 04:53:16,062 [wrapper] pilotpid: 843395
[2025-11-21 23:53:38] 2025-11-22 04:53:16,076 [wrapper] Pilot exit status: 0
[2025-11-21 23:53:38] 2025-11-22 04:53:16,284 [wrapper] pandaids: 6891564392 6891564392 6891564392
[2025-11-21 23:53:38] 2025-11-22 04:53:16,586 [wrapper] cleanup supervisor_pilot 3604883 843396
[2025-11-21 23:53:38] 2025-11-22 04:53:16,606 [wrapper] Test setup, not cleaning
[2025-11-21 23:53:38] 2025-11-22 04:53:16,634 [wrapper] apfmon messages muted
[2025-11-21 23:53:38] 2025-11-22 04:53:16,654 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:53:38] 2025-11-22 04:53:16,676 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:53:38]  *** Error codes and diagnostics ***
[2025-11-21 23:53:38]     "exeErrorCode": 0,
[2025-11-21 23:53:38]     "exeErrorDiag": "",
[2025-11-21 23:53:38]     "pilotErrorCode": 0,
[2025-11-21 23:53:38]     "pilotErrorDiag": "",
[2025-11-21 23:53:38]  *** Listing of results directory ***
[2025-11-21 23:53:38] total 1726224
[2025-11-21 23:53:38] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:29 queuedata.json
[2025-11-21 23:53:38] -rwx------. 1 boincer umatlas     36292 Nov 18 10:29 runpilot2-wrapper.sh
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:53:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:04 run_atlas
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:04 job.xml
[2025-11-21 23:53:38] -rw-r--r--. 3 boincer umatlas 409854135 Nov 19 00:04 EVNT.47493065._000114.pool.root.1
[2025-11-21 23:53:38] -rw-r--r--. 3 boincer umatlas 409854135 Nov 19 00:04 ATLAS.root_0
[2025-11-21 23:53:38] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:04 start_atlas.sh
[2025-11-21 23:53:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:04 shared
[2025-11-21 23:53:38] -rw-r--r--. 2 boincer umatlas    590102 Nov 19 00:04 input.tar.gz
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:04 boinc_lockfile
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas      2773 Nov 20 17:27 pandaJob.out
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas    989825 Nov 20 17:27 agis_schedconf.cvmfs.json
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas       534 Nov 21 22:48 boinc_task_state.xml
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas 910451776 Nov 21 23:48 HITS.47493068._001137.pool.root.1
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas      6525 Nov 21 23:48 init_data.xml
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas      1065 Nov 21 23:50 memory_monitor_summary.json
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas   1526164 Nov 21 23:51 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas   2729447 Nov 21 23:51 log.47493068._001137.job.log.tgz.1
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas      7962 Nov 21 23:52 heartbeat.json
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas        96 Nov 21 23:52 pilot_heartbeat.json
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas      4823 Nov 21 23:53 pilotlog.txt
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas  14052406 Nov 21 23:53 log.47493068._001137.job.log.1
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas       353 Nov 21 23:53 output.list
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas       620 Nov 21 23:53 runtime_log
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas  16803840 Nov 21 23:53 result.tar.gz
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas       916 Nov 21 23:53 v3ENDmXpcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzEFKDmOs2vzn.diag
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas      8790 Nov 21 23:53 runtime_log.err
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas        30 Nov 21 23:53 wrapper_checkpoint.txt
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 23:53 boinc_mmap_file
[2025-11-21 23:53:38] -rw-r--r--. 1 boincer umatlas     26134 Nov 21 23:53 stderr.txt
[2025-11-21 23:53:38] HITS file was successfully produced:
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas 910451776 Nov 21 23:48 shared/HITS.pool.root.1
[2025-11-21 23:53:38]  *** Contents of shared directory: ***
[2025-11-21 23:53:38] total 1306380
[2025-11-21 23:53:38] -rw-r--r--. 3 boincer umatlas 409854135 Nov 19 00:04 ATLAS.root_0
[2025-11-21 23:53:38] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:04 start_atlas.sh
[2025-11-21 23:53:38] -rw-r--r--. 2 boincer umatlas    590102 Nov 19 00:04 input.tar.gz
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas 910451776 Nov 21 23:48 HITS.pool.root.1
[2025-11-21 23:53:38] -rw-------. 1 boincer umatlas  16803840 Nov 21 23:53 result.tar.gz
23:53:40 (835818): run_atlas exited; CPU time 490113.403309
23:53:40 (835818): called boinc_finish(0)

</stderr_txt>
]]>

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