Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-18 11:44:57 (1792): vboxwrapper version 26210
2025-11-18 11:44:57 (1792): BOINC client version: 8.2.5
2025-11-18 11:44:59 (1792): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-11-18 11:44:59 (1792): Successfully copied 'init_data.xml' to the shared directory.
2025-11-18 11:45:00 (1792): Create VM. (boinc_80ab1cfed3701b9c, slot#1)
2025-11-18 11:45:00 (1792): Setting Memory Size for VM. (4400MB)
2025-11-18 11:45:00 (1792): Setting CPU Count for VM. (4)
2025-11-18 11:45:01 (1792): Setting Chipset Options for VM.
2025-11-18 11:45:01 (1792): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-18 11:45:01 (1792): Setting Boot Options for VM.
2025-11-18 11:45:02 (1792): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-18 11:45:02 (1792): Enabling VM Network Access.
2025-11-18 11:45:02 (1792): Disabling USB Support for VM.
2025-11-18 11:45:03 (1792): Disabling COM Port Support for VM.
2025-11-18 11:45:03 (1792): Disabling LPT Port Support for VM.
2025-11-18 11:45:03 (1792): Disabling Audio Support for VM.
2025-11-18 11:45:03 (1792): Disabling Clipboard Support for VM.
2025-11-18 11:45:04 (1792): Disabling Drag and Drop Support for VM.
2025-11-18 11:45:04 (1792): Adding storage controller(s) to VM.
2025-11-18 11:45:04 (1792): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-18 11:45:06 (1792): Adding VirtualBox Guest Additions to VM.
2025-11-18 11:45:07 (1792): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-18 11:45:07 (1792): forwarding host port 51875 to guest port 80
2025-11-18 11:45:07 (1792): Enabling remote desktop for VM.
2025-11-18 11:45:08 (1792): Enabling shared directory for VM.
2025-11-18 11:45:08 (1792): Starting VM using VBoxManage interface. (boinc_80ab1cfed3701b9c, slot#1)
2025-11-18 11:45:15 (1792): Successfully started VM. (PID = '11704')
2025-11-18 11:45:15 (1792): Reporting VM Process ID to BOINC.
2025-11-18 11:45:15 (1792): Guest Log: BIOS: VirtualBox 7.1.4
2025-11-18 11:45:15 (1792): Guest Log: CPUID EDX: 0x178bfbff
2025-11-18 11:45:15 (1792): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-18 11:45:15 (1792): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-18 11:45:15 (1792): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-18 11:45:15 (1792): Detected: Web Application Enabled (http://localhost:51875)
2025-11-18 11:45:15 (1792): Detected: Remote Desktop Enabled (localhost:51876)
2025-11-18 11:45:15 (1792): Preference change detected
2025-11-18 11:45:15 (1792): Setting CPU throttle for VM. (100%)
2025-11-18 11:45:15 (1792): Setting checkpoint interval to 1800 seconds. (Higher value of (Preference: 1800 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-18 11:45:17 (1792): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-18 11:45:17 (1792): Guest Log: BIOS: Booting from Hard Disk...
2025-11-18 11:45:20 (1792): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-18 11:45:20 (1792): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-18 11:45:20 (1792): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-18 11:45:31 (1792): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-18 11:45:31 (1792): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-18 11:45:52 (1792): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-18 11:45:52 (1792): Guest Log: 00:00:00.000188 main     Log opened 2025-11-18T11:45:50.256606000Z
2025-11-18 11:45:52 (1792): Guest Log: 00:00:00.000347 main     OS Product: Linux
2025-11-18 11:45:52 (1792): Guest Log: 00:00:00.000392 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-18 11:45:52 (1792): Guest Log: 00:00:00.000429 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-18 11:45:52 (1792): Guest Log: 00:00:00.000466 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-18 11:45:52 (1792): Guest Log: 00:00:00.000467 main     Process ID: 1319
2025-11-18 11:45:52 (1792): Guest Log: 00:00:00.000468 main     Package type: LINUX_64BITS_GENERIC
2025-11-18 11:45:52 (1792): Guest Log: 00:00:00.001336 main     5.2.32 r132073 started. Verbose level = 0
2025-11-18 11:45:52 (1792): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-18 11:45:52 (1792): Guest Log: [INFO] Mounting shared directory
2025-11-18 11:45:52 (1792): Guest Log: [INFO] Checking for init_data.xml
2025-11-18 11:45:58 (1792): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-18 11:45:58 (1792): Guest Log: [INFO] Detected branch: prod
2025-11-18 11:45:59 (1792): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-18 11:45:59 (1792): Guest Log: Copying input files
2025-11-18 11:46:02 (1792): Guest Log: 00:00:10.009126 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 258 361 000ns (GuestNow=1 763 484 361 518 931 000 ns GuestLast=1 763 466 350 260 570 000 ns fSetTimeLastLoop=true )
2025-11-18 11:46:17 (1792): Guest Log: Copied input files into RunAtlas.
2025-11-18 11:46:17 (1792): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-18 11:46:17 (1792): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-18 11:46:17 (1792): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-18 11:46:17 (1792): Guest Log: Further information can be found at the LHC@home message board.
2025-11-18 11:46:58 (1792): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-18 11:46:59 (1792): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-18 11:46:59 (1792): Guest Log: 2.6.3.0 1598 1 30136 153007 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-18 11:47:05 (1792): Guest Log: copied the webapp to /var/www
2025-11-18 11:47:05 (1792): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-18 11:47:05 (1792): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-18 11:47:07 (1792): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-18 11:47:07 (1792): Guest Log:  *** Starting ATLAS job. (PandaID=6891561768 taskID=47493068) ***
2025-11-18 13:25:18 (1792): Status Report: Elapsed Time: '6000.000000'
2025-11-18 13:25:18 (1792): Status Report: CPU Time: '18397.546875'
2025-11-18 15:05:22 (1792): Status Report: Elapsed Time: '12000.000000'
2025-11-18 15:05:22 (1792): Status Report: CPU Time: '42124.281250'
2025-11-18 16:45:25 (1792): Status Report: Elapsed Time: '18000.000000'
2025-11-18 16:45:25 (1792): Status Report: CPU Time: '65886.296875'
2025-11-18 18:25:29 (1792): Status Report: Elapsed Time: '24000.000000'
2025-11-18 18:25:29 (1792): Status Report: CPU Time: '89655.609375'
2025-11-18 20:05:32 (1792): Status Report: Elapsed Time: '30000.000000'
2025-11-18 20:05:32 (1792): Status Report: CPU Time: '113441.703125'
2025-11-18 21:45:36 (1792): Status Report: Elapsed Time: '36000.000000'
2025-11-18 21:45:36 (1792): Status Report: CPU Time: '137215.734375'
2025-11-18 23:25:39 (1792): Status Report: Elapsed Time: '42000.000000'
2025-11-18 23:25:39 (1792): Status Report: CPU Time: '160995.593750'
2025-11-19 00:29:46 (1792): VM state change detected. (old = 'running', new = 'paused')
2025-11-19 05:33:52 (1792): Guest Log: 12:43:38.893166 timesync vgsvcTimeSyncWorker: Radical host time change: 18 249 152 000 000ns (HostNow=1 763 548 402 746 000 000 ns HostLast=1 763 530 153 594 000 000 ns)
2025-11-19 05:33:52 (1792): VM state change detected. (old = 'paused', new = 'running')
2025-11-19 05:34:02 (1792): Guest Log: 12:43:48.894431 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 242 344 503 000ns (GuestNow=1 763 548 412 747 386 000 ns GuestLast=1 763 530 170 402 883 000 ns fSetTimeLastLoop=true )
2025-11-19 06:09:51 (1792): Status Report: Elapsed Time: '48000.000000'
2025-11-19 06:09:51 (1792): Status Report: CPU Time: '184771.734375'
2025-11-19 07:49:54 (1792): Status Report: Elapsed Time: '54000.000000'
2025-11-19 07:49:54 (1792): Status Report: CPU Time: '208560.296875'
2025-11-19 08:41:11 (1792): Guest Log:  *** Job finished ***
2025-11-19 08:41:11 (1792): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:07,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:07,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:33,478 | INFO     | [monitor] cgroup control has ended
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:34,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139889069266752)>', '<ExcThread(monitor, started 139888309540608)>']
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:35,747 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:35,747 | INFO     | [monitor] control thread has ended
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,009 | INFO     | all workflow threads have been joined
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,009 | INFO     | end of generic workflow (traces error code: 0)
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,010 | INFO     | traces error code: 0
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,010 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,503 [wrapper] ==== pilot stdout END ====
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,510 [wrapper] ==== wrapper stdout RESUME ====
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,515 [wrapper] pilotpid: 6028
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,520 [wrapper] Pilot exit status: 0
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,555 [wrapper] pandaids: 6891561768
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,582 [wrapper] cleanup supervisor_pilot 21401 6029
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,589 [wrapper] Test setup, not cleaning
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,594 [wrapper] apfmon messages muted
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,598 [wrapper] ==== wrapper stdout END ====
2025-11-19 08:41:11 (1792): Guest Log: 2025-11-19 13:40:40,602 [wrapper] ==== wrapper stderr END ====
2025-11-19 08:41:11 (1792): Guest Log:  *** Error codes and diagnostics ***
2025-11-19 08:41:11 (1792): Guest Log:     "exeErrorCode": 0,
2025-11-19 08:41:11 (1792): Guest Log:     "exeErrorDiag": "",
2025-11-19 08:41:11 (1792): Guest Log:     "pilotErrorCode": 0,
2025-11-19 08:41:11 (1792): Guest Log:     "pilotErrorDiag": "",
2025-11-19 08:41:11 (1792): Guest Log:  *** Listing of results directory ***
2025-11-19 08:41:11 (1792): Guest Log: total 924408
2025-11-19 08:41:11 (1792): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:15 pilot3.tar.gz
2025-11-19 08:41:11 (1792): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 15:27 queuedata.json
2025-11-19 08:41:11 (1792): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 15:27 runpilot2-wrapper.sh
2025-11-19 08:41:11 (1792): Guest Log: -rwxr-xr-x. 1 atlas atlas      8699 Nov 18 16:45 init_data.xml
2025-11-19 08:41:11 (1792): Guest Log: -rwxr-xr-x. 1 atlas atlas    590102 Nov 18 16:45 input.tar.gz
2025-11-19 08:41:11 (1792): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 18 16:45 start_atlas.sh
2025-11-19 08:41:11 (1792): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 18 16:46 EVNT.47493065._000098.pool.root.1 -> /data/./ATLAS.root_0
2025-11-19 08:41:11 (1792): Guest Log: -rw-r--r--. 1 atlas atlas      2771 Nov 18 16:47 pandaJob.out
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas    992798 Nov 18 16:50 agis_schedconf.cvmfs.json
2025-11-19 08:41:11 (1792): Guest Log: drwx------. 5 atlas atlas      4096 Nov 18 16:50 pilot3
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas 924346605 Nov 19 13:38 HITS.47493068._000980.pool.root.1
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas      1045 Nov 19 13:39 memory_monitor_summary.json
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas   1525063 Nov 19 13:39 agis_ddmendpoints.agis.ALL.json
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas   1659930 Nov 19 13:39 log.47493068._000980.job.log.tgz.1
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas        98 Nov 19 13:39 pilot_heartbeat.json
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas      8648 Nov 19 13:39 heartbeat.json
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 19 13:40 pilotlog.txt
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas   7535943 Nov 19 13:40 log.47493068._000980.job.log.1
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas       353 Nov 19 13:40 output.list
2025-11-19 08:41:11 (1792): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 19 13:40 runtime_log
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas   9216000 Nov 19 13:40 result.tar.gz
2025-11-19 08:41:11 (1792): Guest Log: -rw-r--r--. 1 atlas atlas      8624 Nov 19 13:40 runtime_log.err
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas       661 Nov 19 13:40 l7GNDmXncf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSQFKDmKWMtVm.diag
2025-11-19 08:41:11 (1792): Guest Log: Looking for outputfile HITS.47493068._000980.pool.root.1
2025-11-19 08:41:11 (1792): Guest Log: HITS file was successfully produced
2025-11-19 08:41:11 (1792): Guest Log: -rw-------. 1 atlas atlas 924346605 Nov 19 13:38 /home/atlas/RunAtlas/HITS.47493068._000980.pool.root.1
2025-11-19 08:41:16 (1792): Guest Log: Successfully finished the ATLAS job!
2025-11-19 08:41:16 (1792): Guest Log: Copying the results back to the shared directory!
2025-11-19 08:41:16 (1792): Guest Log:  *** Contents of shared directory: ***
2025-11-19 08:41:16 (1792): Guest Log: total 1312672
2025-11-19 08:41:16 (1792): Guest Log: -rwxrwxrwx. 1 root root 409985778 Nov 18 16:44 ATLAS.root_0
2025-11-19 08:41:16 (1792): Guest Log: -rwxrwxrwx. 1 root root 924346605 Nov 19  2025 HITS.pool.root.1
2025-11-19 08:41:16 (1792): Guest Log: -rwxrwxrwx. 1 root root      8699 Nov 18 16:44 init_data.xml
2025-11-19 08:41:16 (1792): Guest Log: -rwxrwxrwx. 1 root root    590102 Nov 18 16:01 input.tar.gz
2025-11-19 08:41:16 (1792): Guest Log: -rwxrwxrwx. 1 root root   9216000 Nov 19  2025 result.tar.gz
2025-11-19 08:41:16 (1792): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 18 16:01 start_atlas.sh
2025-11-19 08:41:16 (1792): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-19 08:41:17 (1792): VM Completion File Detected.
2025-11-19 08:41:17 (1792): Powering off VM.
2025-11-19 08:41:19 (1792): Successfully stopped VM.
2025-11-19 08:41:19 (1792): Deregistering VM. (boinc_80ab1cfed3701b9c, slot#1)
2025-11-19 08:41:19 (1792): Removing network bandwidth throttle group from VM.
2025-11-19 08:41:19 (1792): Removing VM from VirtualBox.
2025-11-19 08:41:25 (1792): called boinc_finish(0)

</stderr_txt>
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