Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:00:14 (21978): wrapper (7.7.26015): starting
17:00:14 (21978): wrapper: running run_atlas (--nthreads 8)
[2025-11-18 17:00:14] Arguments: --nthreads 8
[2025-11-18 17:00:14] Threads: 8
[2025-11-18 17:00:14] Checking for CVMFS
[2025-11-18 17:00:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 17:00:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 17:00:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 17:00:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 17:00:19] 2.11.2.0 6428 273888 144292 153004 1 11 18176743 25165825 2910 130560 3 136186039 99.877 82228695 3274 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-18 17:00:19] CVMFS is ok
[2025-11-18 17:00:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 17:00:19] Checking for apptainer binary...
[2025-11-18 17:00:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 17:00:19] Running /usr/bin/apptainer --version
[2025-11-18 17:00:20] apptainer version 1.3.2-1.el7
[2025-11-18 17:00:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 17:00:34] cg-vwn335.simple-grid.lan
[2025-11-18 17:00:34] apptainer works
[2025-11-18 17:00:34] Set ATHENA_PROC_NUMBER=8
[2025-11-18 17:00:34] Set ATHENA_CORE_NUMBER=8
[2025-11-18 17:00:34] Starting ATLAS job with PandaID=6891561647
[2025-11-18 17:00:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 18:37:08]  *** The last 200 lines of the pilot log: ***
[2025-11-19 18:37:08] 2025-11-19 17:36:03,664 | INFO     | time since job start (91905s) is within the limit (172800.0s)
[2025-11-19 18:37:08] 2025-11-19 17:36:03,679 | INFO     | monitor loop #6178: job 0:6891561647 is in state 'finished'
[2025-11-19 18:37:08] 2025-11-19 17:36:03,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 18:37:08] 2025-11-19 17:36:04,905 | INFO     | PID=26104 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-19 18:37:08] 2025-11-19 17:36:04,906 | INFO     | .. there are 9 such processes running
[2025-11-19 18:37:08] 2025-11-19 17:36:05,907 | INFO     | time since job start (91907s) is within the limit (172800.0s)
[2025-11-19 18:37:08] 2025-11-19 17:36:06,190 | INFO     | monitor loop #6179: job 0:6891561647 is in state 'finished'
[2025-11-19 18:37:08] 2025-11-19 17:36:06,191 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 18:37:08] 2025-11-19 17:36:07,914 | INFO     | time since job start (91909s) is within the limit (172800.0s)
[2025-11-19 18:37:08] 2025-11-19 17:36:08,699 | INFO     | monitor loop #6180: job 0:6891561647 is in state 'finished'
[2025-11-19 18:37:08] 2025-11-19 17:36:08,699 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 18:37:08] 2025-11-19 17:36:09,923 | INFO     | time since job start (91911s) is within the limit (172800.0s)
[2025-11-19 18:37:08] 2025-11-19 17:36:11,203 | INFO     | monitor loop #6181: job 0:6891561647 is in state 'finished'
[2025-11-19 18:37:08] 2025-11-19 17:36:11,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 18:37:08] 2025-11-19 17:36:11,931 | INFO     | time since job start (91913s) is within the limit (172800.0s)
[2025-11-19 18:37:08] 2025-11-19 17:36:12,928 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-19 18:37:08] 2025-11-19 17:36:12,929 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-19 18:37:08] 2025-11-19 17:36:12,931 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891561647/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 18:37:08] 2025-11-19 17:36:12,932 | INFO     | extracted standard info from prmon json
[2025-11-19 18:37:08] 2025-11-19 17:36:12,932 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 18:37:08] 2025-11-19 17:36:12,936 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 18:37:08] 2025-11-19 17:36:12,972 | INFO     | fitting pss+swap vs Time
[2025-11-19 18:37:08] 2025-11-19 17:36:12,975 | INFO     | sum of square deviations: 1040268216607.3624
[2025-11-19 18:37:08] 2025-11-19 17:36:13,053 | INFO     | sum of deviations: 5123616484189.291
[2025-11-19 18:37:08] 2025-11-19 17:36:13,054 | INFO     | mean x: 1763527993.1022043
[2025-11-19 18:37:08] 2025-11-19 17:36:13,054 | INFO     | mean y: 2818437.4555778224
[2025-11-19 18:37:08] 2025-11-19 17:36:13,054 | INFO     | intersect: -8683057908.219715
[2025-11-19 18:37:08] 2025-11-19 17:36:13,056 | INFO     | chi2: 32.57658832621361
[2025-11-19 18:37:08] 2025-11-19 17:36:13,058 | INFO     | sum of square deviations: 1029880004136.2684
[2025-11-19 18:37:08] 2025-11-19 17:36:13,125 | INFO     | sum of deviations: 5602569755804.496
[2025-11-19 18:37:08] 2025-11-19 17:36:13,125 | INFO     | mean x: 1763527840.6058981
[2025-11-19 18:37:08] 2025-11-19 17:36:13,126 | INFO     | mean y: 2825467.3987935656
[2025-11-19 18:37:08] 2025-11-19 17:36:13,126 | INFO     | intersect: -9590804570.679417
[2025-11-19 18:37:08] 2025-11-19 17:36:13,128 | INFO     | chi2: 29.556960746527984
[2025-11-19 18:37:08] 2025-11-19 17:36:13,128 | INFO     | current chi2=29.556960746527984 (change=9.269318043522079 %)
[2025-11-19 18:37:08] 2025-11-19 17:36:13,128 | INFO     | right removable region: 1491
[2025-11-19 18:37:08] 2025-11-19 17:36:13,130 | INFO     | sum of square deviations: 1029878997636.2673
[2025-11-19 18:37:08] 2025-11-19 17:36:13,194 | INFO     | sum of deviations: 4481868911938.55
[2025-11-19 18:37:08] 2025-11-19 17:36:13,194 | INFO     | mean x: 1763528145.6058981
[2025-11-19 18:37:08] 2025-11-19 17:36:13,195 | INFO     | mean y: 2827857.6896782843
[2025-11-19 18:37:08] 2025-11-19 17:36:13,195 | INFO     | intersect: -7671764972.400459
[2025-11-19 18:37:08] 2025-11-19 17:36:13,197 | INFO     | chi2: 27.365567631409508
[2025-11-19 18:37:08] 2025-11-19 17:36:13,197 | INFO     | current chi2=27.365567631409508 (change=15.996213730616219 %)
[2025-11-19 18:37:08] 2025-11-19 17:36:13,197 | INFO     | left removable region: 10
[2025-11-19 18:37:08] 2025-11-19 17:36:13,199 | INFO     | sum of square deviations: 1007267872459.7153
[2025-11-19 18:37:08] 2025-11-19 17:36:13,263 | INFO     | sum of deviations: 4460236823778.145
[2025-11-19 18:37:08] 2025-11-19 17:36:13,264 | INFO     | mean x: 1763528115.1141121
[2025-11-19 18:37:08] 2025-11-19 17:36:13,264 | INFO     | mean y: 2845639.839297772
[2025-11-19 18:37:08] 2025-11-19 17:36:13,264 | INFO     | intersect: -7806152595.746348
[2025-11-19 18:37:08] 2025-11-19 17:36:13,266 | INFO     | chi2: 18.9350549779922
[2025-11-19 18:37:08] 2025-11-19 17:36:13,267 | INFO     | current memory leak: 4.43 B/s (using 1481 data points, chi2=18.94)
[2025-11-19 18:37:08] 2025-11-19 17:36:13,269 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-19 18:37:08] 2025-11-19 17:36:13,269 | INFO     | ..............................
[2025-11-19 18:37:08] 2025-11-19 17:36:13,269 | INFO     | . Timing measurements:
[2025-11-19 18:37:08] 2025-11-19 17:36:13,269 | INFO     | . get job = 0 s
[2025-11-19 18:37:08] 2025-11-19 17:36:13,269 | INFO     | . initial setup = 7 s
[2025-11-19 18:37:08] 2025-11-19 17:36:13,270 | INFO     | . payload setup = 162 s
[2025-11-19 18:37:08] 2025-11-19 17:36:13,270 | INFO     | . stage-in = 0 s
[2025-11-19 18:37:08] 2025-11-19 17:36:13,270 | INFO     | . payload execution = 91470 s
[2025-11-19 18:37:08] 2025-11-19 17:36:13,270 | INFO     | . stage-out = 6 s
[2025-11-19 18:37:08] 2025-11-19 17:36:13,270 | INFO     | . log creation = 2 s
[2025-11-19 18:37:08] 2025-11-19 17:36:13,270 | INFO     | ..............................
[2025-11-19 18:37:08] 2025-11-19 17:36:13,757 | INFO     | 
[2025-11-19 18:37:08] 2025-11-19 17:36:13,759 | INFO     | job summary report
[2025-11-19 18:37:08] 2025-11-19 17:36:13,759 | INFO     | --------------------------------------------------
[2025-11-19 18:37:08] 2025-11-19 17:36:13,759 | INFO     | PanDA job id: 6891561647
[2025-11-19 18:37:08] 2025-11-19 17:36:13,759 | INFO     | task id: 47493068
[2025-11-19 18:37:08] 2025-11-19 17:36:13,759 | INFO     | errors: (none)
[2025-11-19 18:37:08] 2025-11-19 17:36:13,759 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 18:37:08] 2025-11-19 17:36:13,759 | INFO     | pilot state: finished 
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | transexitcode: 0
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | exeerrorcode: 0
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | exeerrordiag: 
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | exitcode: 0
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | exitmsg: OK
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | cpuconsumptiontime: 337527 s
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | nevents: 1000
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | neventsw: 0
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | pid: 32699
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | pgrp: 32699
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | corecount: 8
[2025-11-19 18:37:08] 2025-11-19 17:36:13,760 | INFO     | event service: False
[2025-11-19 18:37:08] 2025-11-19 17:36:13,761 | INFO     | sizes: {0: 2296368, 1: 2297224, 2: 2297224, 12: 2297252, 23: 2297280, 34: 2297308, 45: 2297464, 55: 2297492, 66: 2297520, 77: 2297548, 84: 2297866, 87: 2298174, 91
[2025-11-19 18:37:08] 2025-11-19 17:36:13,761 | INFO     | --------------------------------------------------
[2025-11-19 18:37:08] 2025-11-19 17:36:13,761 | INFO     | 
[2025-11-19 18:37:08] 2025-11-19 17:36:13,761 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-19 18:37:08] 2025-11-19 17:36:13,978 | INFO     | time since job start (91915s) is within the limit (172800.0s)
[2025-11-19 18:37:08] 2025-11-19 17:36:14,338 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,338 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,338 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,339 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,340 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,340 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,340 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,340 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 18:37:08] 2025-11-19 17:36:14,340 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,340 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 18:37:08] 2025-11-19 17:36:14,340 | INFO     | job 6891561647 has completed (purged errors)
[2025-11-19 18:37:08] 2025-11-19 17:36:14,341 | INFO     | overall cleanup function is called
[2025-11-19 18:37:08] 2025-11-19 17:36:15,369 | INFO     | --- collectZombieJob: --- 10, [32699]
[2025-11-19 18:37:08] 2025-11-19 17:36:15,370 | INFO     | zombie collector waiting for pid 32699
[2025-11-19 18:37:08] 2025-11-19 17:36:15,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 18:37:08] 2025-11-19 17:36:15,370 | INFO     | collected zombie processes
[2025-11-19 18:37:08] 2025-11-19 17:36:15,370 | INFO     | will attempt to kill all subprocesses of pid=32699
[2025-11-19 18:37:08] 2025-11-19 17:36:15,484 | INFO     | process IDs to be killed: [32699] (in reverse order)
[2025-11-19 18:37:08] 2025-11-19 17:36:16,081 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 18:37:08] 2025-11-19 17:36:16,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 18:37:08] 2025-11-19 17:36:16,085 | INFO     | did not find any defunct processes belonging to 32699
[2025-11-19 18:37:08] 2025-11-19 17:36:16,089 | INFO     | did not find any defunct processes belonging to 32699
[2025-11-19 18:37:08] 2025-11-19 17:36:16,134 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 18:37:08] 2025-11-19 17:36:16,134 | INFO     | ready for new job
[2025-11-19 18:37:08] 2025-11-19 17:36:16,135 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 18:37:08] 2025-11-19 17:36:16,142 | INFO     | ***************************************
[2025-11-19 18:37:08] 2025-11-19 17:36:16,143 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 18:37:08] 2025-11-19 17:36:16,143 | INFO     | ***************************************
[2025-11-19 18:37:08] 2025-11-19 17:36:16,143 | INFO     | 
[2025-11-19 18:37:08] 2025-11-19 17:36:16,144 | INFO     | pilot is running in a VM
[2025-11-19 18:37:08] 2025-11-19 17:36:16,144 | INFO     | architecture information:
[2025-11-19 18:37:08] 2025-11-19 17:36:16,155 | INFO     | executing command: cat /etc/os-release
[2025-11-19 18:37:08] 2025-11-19 17:36:16,385 | INFO     | cat /etc/os-release:
[2025-11-19 18:37:08] NAME="CentOS Linux"
[2025-11-19 18:37:08] VERSION="7 (Core)"
[2025-11-19 18:37:08] ID="centos"
[2025-11-19 18:37:08] ID_LIKE="rhel fedora"
[2025-11-19 18:37:08] VERSION_ID="7"
[2025-11-19 18:37:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 18:37:08] ANSI_COLOR="0;31"
[2025-11-19 18:37:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 18:37:08] HOME_URL="https://www.centos.org/"
[2025-11-19 18:37:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 18:37:08] 
[2025-11-19 18:37:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 18:37:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 18:37:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 18:37:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 18:37:08] 
[2025-11-19 18:37:08] 2025-11-19 17:36:16,386 | INFO     | ***************************************
[2025-11-19 18:37:08] 2025-11-19 17:36:16,890 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-19 18:37:08] 2025-11-19 17:36:17,087 | INFO     | sufficient remaining disk space (494921580544 B)
[2025-11-19 18:37:08] 2025-11-19 17:36:17,088 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 18:37:08] 2025-11-19 17:36:17,088 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 18:37:08] 2025-11-19 17:36:17,088 | INFO     | update_server=False
[2025-11-19 18:37:08] 2025-11-19 17:36:17,088 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 18:37:08] 2025-11-19 17:36:17,089 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 18:37:08] 2025-11-19 17:36:17,230 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 18:37:08] 2025-11-19 17:36:17,231 | INFO     | aborting loop
[2025-11-19 18:37:08] 2025-11-19 17:36:17,989 | INFO     | all job control threads have been joined
[2025-11-19 18:37:08] 2025-11-19 17:36:18,086 | INFO     | all data control threads have been joined
[2025-11-19 18:37:08] 2025-11-19 17:36:18,095 | INFO     | [job] retrieve thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:18,109 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:18,237 | INFO     | [job] job monitor thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:18,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:18,362 | INFO     | all payload control threads have been joined
[2025-11-19 18:37:08] 2025-11-19 17:36:18,423 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 18:37:08] 2025-11-19 17:36:18,688 | INFO     | [payload] validate_post thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:18,859 | INFO     | [data] copytool_in thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:18,975 | INFO     | [job] validate thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:18,996 | INFO     | [job] control thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:19,093 | INFO     | [data] control thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:19,096 | INFO     | [data] copytool_out thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:19,285 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:19,368 | INFO     | [payload] control thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:19,430 | INFO     | [job] queue monitor thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:19,456 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:19,470 | INFO     | [payload] failed_post thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:19,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 18:37:08] 2025-11-19 17:36:23,578 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 18:37:08] 2025-11-19 17:36:47,169 | INFO     | PID=26104 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-19 18:37:08] 2025-11-19 17:36:47,169 | INFO     | .. there are 9 such processes running
[2025-11-19 18:37:08] 2025-11-19 17:36:47,171 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 18:37:08] 2025-11-19 17:36:47,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 18:37:08] 2025-11-19 17:36:47,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 18:37:08] 2025-11-19 17:36:59,113 | INFO     | [monitor] cgroup control has ended
[2025-11-19 18:37:08] 2025-11-19 17:36:59,140 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139923873810240)>', '<ExcThread(monitor, started 139923415869184)>']
[2025-11-19 18:37:08] 2025-11-19 17:36:59,241 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 18:37:08] 2025-11-19 17:36:59,242 | INFO     | [monitor] control thread has ended
[2025-11-19 18:37:08] 2025-11-19 17:37:04,165 | INFO     | all workflow threads have been joined
[2025-11-19 18:37:08] 2025-11-19 17:37:04,166 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 18:37:08] 2025-11-19 17:37:04,166 | INFO     | traces error code: 0
[2025-11-19 18:37:08] 2025-11-19 17:37:04,167 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 18:37:08] 2025-11-19 17:37:04,502 [wrapper] ==== pilot stdout END ====
[2025-11-19 18:37:08] 2025-11-19 17:37:04,524 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 18:37:08] 2025-11-19 17:37:04,546 [wrapper] pilotpid: 26104
[2025-11-19 18:37:08] 2025-11-19 17:37:04,576 [wrapper] Pilot exit status: 0
[2025-11-19 18:37:08] 2025-11-19 17:37:04,783 [wrapper] pandaids: 6891561647
[2025-11-19 18:37:08] 2025-11-19 17:37:05,663 [wrapper] cleanup supervisor_pilot 15630 26105
[2025-11-19 18:37:08] 2025-11-19 17:37:05,776 [wrapper] Test setup, not cleaning
[2025-11-19 18:37:08] 2025-11-19 17:37:05,840 [wrapper] apfmon messages muted
[2025-11-19 18:37:08] 2025-11-19 17:37:05,934 [wrapper] ==== wrapper stdout END ====
[2025-11-19 18:37:08] 2025-11-19 17:37:06,053 [wrapper] ==== wrapper stderr END ====
[2025-11-19 18:37:08]  *** Error codes and diagnostics ***
[2025-11-19 18:37:08]     "exeErrorCode": 0,
[2025-11-19 18:37:08]     "exeErrorDiag": "",
[2025-11-19 18:37:08]     "pilotErrorCode": 0,
[2025-11-19 18:37:08]     "pilotErrorDiag": "",
[2025-11-19 18:37:08]  *** Listing of results directory ***
[2025-11-19 18:37:08] total 1333896
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-19 18:37:08] -rwx------. 1 boinc boinc     36292 Nov 18 16:27 runpilot2-wrapper.sh
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc       100 Nov 18 17:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 18:37:08] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 17:00 run_atlas
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc       105 Nov 18 17:00 job.xml
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc      6389 Nov 18 17:00 init_data.xml
[2025-11-19 18:37:08] -rw-r--r--. 2 boinc boinc 410091759 Nov 18 17:00 EVNT.47493065._000092.pool.root.1
[2025-11-19 18:37:08] -rw-r--r--. 2 boinc boinc     15120 Nov 18 17:00 start_atlas.sh
[2025-11-19 18:37:08] drwxrwx--x. 2 boinc boinc        68 Nov 18 17:00 shared
[2025-11-19 18:37:08] -rw-r--r--. 2 boinc boinc    590100 Nov 18 17:00 input.tar.gz
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc         0 Nov 18 17:00 boinc_lockfile
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc      2771 Nov 18 17:00 pandaJob.out
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc    992766 Nov 18 17:04 agis_schedconf.cvmfs.json
[2025-11-19 18:37:08] drwx------. 5 boinc boinc      4096 Nov 18 17:04 pilot3
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc       533 Nov 19 18:09 boinc_task_state.xml
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc 922156167 Nov 19 18:33 HITS.47493068._000917.pool.root.1
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc      1033 Nov 19 18:34 memory_monitor_summary.json
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc   1525063 Nov 19 18:34 agis_ddmendpoints.agis.ALL.json
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc   2580236 Nov 19 18:34 log.47493068._000917.job.log.tgz.1
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc      7946 Nov 19 18:36 heartbeat.json
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc      8192 Nov 19 18:36 boinc_mmap_file
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc        29 Nov 19 18:36 wrapper_checkpoint.txt
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc        95 Nov 19 18:36 pilot_heartbeat.json
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc      4884 Nov 19 18:37 pilotlog.txt
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc  12295497 Nov 19 18:37 log.47493068._000917.job.log.1
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc       353 Nov 19 18:37 output.list
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc       620 Nov 19 18:37 runtime_log
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc  14899200 Nov 19 18:37 result.tar.gz
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc      8703 Nov 19 18:37 runtime_log.err
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc       662 Nov 19 18:37 JzsNDmRncf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlPFKDmo9Seqn.diag
[2025-11-19 18:37:08] -rw-r--r--. 1 boinc boinc     21504 Nov 19 18:37 stderr.txt
[2025-11-19 18:37:08] HITS file was successfully produced:
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc 922156167 Nov 19 18:33 shared/HITS.pool.root.1
[2025-11-19 18:37:08]  *** Contents of shared directory: ***
[2025-11-19 18:37:08] total 1316176
[2025-11-19 18:37:08] -rw-r--r--. 2 boinc boinc 410091759 Nov 18 17:00 ATLAS.root_0
[2025-11-19 18:37:08] -rw-r--r--. 2 boinc boinc     15120 Nov 18 17:00 start_atlas.sh
[2025-11-19 18:37:08] -rw-r--r--. 2 boinc boinc    590100 Nov 18 17:00 input.tar.gz
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc 922156167 Nov 19 18:33 HITS.pool.root.1
[2025-11-19 18:37:08] -rw-------. 1 boinc boinc  14899200 Nov 19 18:37 result.tar.gz
18:37:10 (21978): run_atlas exited; CPU time 338265.959919
18:37:10 (21978): called boinc_finish(0)

</stderr_txt>
]]>

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