Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:06:08 (12662): wrapper (7.7.26015): starting
20:06:08 (12662): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:06:08] Arguments: --nthreads 8
[2025-11-20 20:06:08] Threads: 8
[2025-11-20 20:06:08] Checking for CVMFS
[2025-11-20 20:06:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:06:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:06:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:06:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:06:11] 2.11.2.0 6428 276954 147272 153088 1 294 20425347 25165824 4541 130560 3 137727707 99.874 83085174 3258 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 20:06:11] CVMFS is ok
[2025-11-20 20:06:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:06:11] Checking for apptainer binary...
[2025-11-20 20:06:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:06:11] Running /usr/bin/apptainer --version
[2025-11-20 20:06:11] apptainer version 1.3.2-1.el7
[2025-11-20 20:06:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:06:18] cg-vwn335.simple-grid.lan
[2025-11-20 20:06:18] apptainer works
[2025-11-20 20:06:18] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:06:18] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:06:19] Starting ATLAS job with PandaID=6891561646
[2025-11-20 20:06:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:35:40]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:35:40] 2025-11-21 20:34:28,238 | INFO     | monitor loop #6150: job 0:6891561646 is in state 'finished'
[2025-11-21 21:35:40] 2025-11-21 20:34:28,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:35:40] 2025-11-21 20:34:28,254 | INFO     | sum of deviations: 4284176788604.417
[2025-11-21 21:35:40] 2025-11-21 20:34:28,262 | INFO     | mean x: 1763711711.7268457
[2025-11-21 21:35:40] 2025-11-21 20:34:28,263 | INFO     | mean y: 2872093.66442953
[2025-11-21 21:35:40] 2025-11-21 20:34:28,263 | INFO     | intersect: -7363582231.394752
[2025-11-21 21:35:40] 2025-11-21 20:34:28,265 | INFO     | chi2: 16.76832248209638
[2025-11-21 21:35:40] 2025-11-21 20:34:28,275 | INFO     | sum of square deviations: 1015447020341.7754
[2025-11-21 21:35:40] 2025-11-21 20:34:28,383 | INFO     | sum of deviations: 4750573073245.494
[2025-11-21 21:35:40] 2025-11-21 20:34:28,384 | INFO     | mean x: 1763711559.2309763
[2025-11-21 21:35:40] 2025-11-21 20:34:28,384 | INFO     | mean y: 2879005.123905724
[2025-11-21 21:35:40] 2025-11-21 20:34:28,384 | INFO     | intersect: -8248305423.41915
[2025-11-21 21:35:40] 2025-11-21 20:34:28,386 | INFO     | chi2: 14.121597822869184
[2025-11-21 21:35:40] 2025-11-21 20:34:28,386 | INFO     | current chi2=14.121597822869184 (change=15.78407537219729 %)
[2025-11-21 21:35:40] 2025-11-21 20:34:28,386 | INFO     | right removable region: 1484
[2025-11-21 21:35:40] 2025-11-21 20:34:28,388 | INFO     | sum of square deviations: 1015445905261.7755
[2025-11-21 21:35:40] 2025-11-21 20:34:28,449 | INFO     | sum of deviations: 3648488658900.3164
[2025-11-21 21:35:40] 2025-11-21 20:34:28,449 | INFO     | mean x: 1763711864.2309763
[2025-11-21 21:35:40] 2025-11-21 20:34:28,449 | INFO     | mean y: 2881512.4713804713
[2025-11-21 21:35:40] 2025-11-21 20:34:28,450 | INFO     | intersect: -6334120489.182051
[2025-11-21 21:35:40] 2025-11-21 20:34:28,451 | INFO     | chi2: 11.85843148638596
[2025-11-21 21:35:40] 2025-11-21 20:34:28,452 | INFO     | current chi2=11.85843148638596 (change=29.28075244827105 %)
[2025-11-21 21:35:40] 2025-11-21 20:34:28,454 | INFO     | sum of square deviations: 1005222793254.1722
[2025-11-21 21:35:40] 2025-11-21 20:34:28,517 | INFO     | sum of deviations: 3093052502672.172
[2025-11-21 21:35:40] 2025-11-21 20:34:28,517 | INFO     | mean x: 1763712016.735135
[2025-11-21 21:35:40] 2025-11-21 20:34:28,518 | INFO     | mean y: 2889797.337162162
[2025-11-21 21:35:40] 2025-11-21 20:34:28,518 | INFO     | intersect: -5424020439.8407
[2025-11-21 21:35:40] 2025-11-21 20:34:28,519 | INFO     | chi2: 8.21940834157513
[2025-11-21 21:35:40] 2025-11-21 20:34:28,520 | INFO     | current chi2=8.21940834157513 (change=30.687221568793483 %)
[2025-11-21 21:35:40] 2025-11-21 20:34:28,522 | INFO     | sum of square deviations: 995068519746.5192
[2025-11-21 21:35:40] 2025-11-21 20:34:28,588 | INFO     | sum of deviations: 2567140138467.7876
[2025-11-21 21:35:40] 2025-11-21 20:34:28,588 | INFO     | mean x: 1763712169.239322
[2025-11-21 21:35:40] 2025-11-21 20:34:28,589 | INFO     | mean y: 2897694.82779661
[2025-11-21 21:35:40] 2025-11-21 20:34:28,589 | INFO     | intersect: -4547237509.441078
[2025-11-21 21:35:40] 2025-11-21 20:34:28,591 | INFO     | chi2: 5.0222272966885075
[2025-11-21 21:35:40] 2025-11-21 20:34:28,591 | INFO     | current chi2=5.0222272966885075 (change=38.89794632436925 %)
[2025-11-21 21:35:40] 2025-11-21 20:34:28,593 | INFO     | sum of square deviations: 984983121739.769
[2025-11-21 21:35:40] 2025-11-21 20:34:28,655 | INFO     | sum of deviations: 2358846680236.2124
[2025-11-21 21:35:40] 2025-11-21 20:34:28,656 | INFO     | mean x: 1763712321.7414966
[2025-11-21 21:35:40] 2025-11-21 20:34:28,656 | INFO     | mean y: 2900841.476870748
[2025-11-21 21:35:40] 2025-11-21 20:34:28,656 | INFO     | intersect: -4220853721.630033
[2025-11-21 21:35:40] 2025-11-21 20:34:28,659 | INFO     | chi2: 4.4439030116472935
[2025-11-21 21:35:40] 2025-11-21 20:34:28,659 | INFO     | current chi2=4.4439030116472935 (change=11.515294925471457 %)
[2025-11-21 21:35:40] 2025-11-21 20:34:28,659 | INFO     | left removable region: 40
[2025-11-21 21:35:40] 2025-11-21 20:34:28,661 | INFO     | sum of square deviations: 933638598925.6815
[2025-11-21 21:35:40] 2025-11-21 20:34:28,719 | INFO     | sum of deviations: 2653501947257.695
[2025-11-21 21:35:40] 2025-11-21 20:34:28,719 | INFO     | mean x: 1763712748.743075
[2025-11-21 21:35:40] 2025-11-21 20:34:28,719 | INFO     | mean y: 2914378.5948753464
[2025-11-21 21:35:40] 2025-11-21 20:34:28,720 | INFO     | intersect: -5009748142.618544
[2025-11-21 21:35:40] 2025-11-21 20:34:28,721 | INFO     | chi2: 0.7023819316099573
[2025-11-21 21:35:40] 2025-11-21 20:34:28,722 | INFO     | current memory leak: 2.84 B/s (using 1444 data points, chi2=0.70)
[2025-11-21 21:35:40] 2025-11-21 20:34:28,724 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-21 21:35:40] 2025-11-21 20:34:28,725 | INFO     | ..............................
[2025-11-21 21:35:40] 2025-11-21 20:34:28,725 | INFO     | . Timing measurements:
[2025-11-21 21:35:40] 2025-11-21 20:34:28,725 | INFO     | . get job = 0 s
[2025-11-21 21:35:40] 2025-11-21 20:34:28,725 | INFO     | . initial setup = 9 s
[2025-11-21 21:35:40] 2025-11-21 20:34:28,725 | INFO     | . payload setup = 160 s
[2025-11-21 21:35:40] 2025-11-21 20:34:28,725 | INFO     | . stage-in = 0 s
[2025-11-21 21:35:40] 2025-11-21 20:34:28,725 | INFO     | . payload execution = 91036 s
[2025-11-21 21:35:40] 2025-11-21 20:34:28,725 | INFO     | . stage-out = 3 s
[2025-11-21 21:35:40] 2025-11-21 20:34:28,725 | INFO     | . log creation = 1 s
[2025-11-21 21:35:40] 2025-11-21 20:34:28,726 | INFO     | ..............................
[2025-11-21 21:35:40] 2025-11-21 20:34:28,856 | INFO     | 
[2025-11-21 21:35:40] 2025-11-21 20:34:28,856 | INFO     | job summary report
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | --------------------------------------------------
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | PanDA job id: 6891561646
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | task id: 47493068
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | errors: (none)
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | pilot state: finished 
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | transexitcode: 0
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | exeerrorcode: 0
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | exeerrordiag: 
[2025-11-21 21:35:40] 2025-11-21 20:34:28,857 | INFO     | exitcode: 0
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | exitmsg: OK
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | cpuconsumptiontime: 339377 s
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | nevents: 1000
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | neventsw: 0
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | pid: 23057
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | pgrp: 23057
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | corecount: 8
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | event service: False
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | sizes: {0: 2298565, 1: 2298820, 2: 2298848, 13: 2298848, 23: 2298904, 34: 2298932, 45: 2299088, 56: 2299116, 66: 2299144, 77: 2299172, 88: 2299228, 92: 2299798, 99
[2025-11-21 21:35:40] 2025-11-21 20:34:28,858 | INFO     | --------------------------------------------------
[2025-11-21 21:35:40] 2025-11-21 20:34:28,859 | INFO     | 
[2025-11-21 21:35:40] 2025-11-21 20:34:28,859 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-21 21:35:40] 2025-11-21 20:34:29,067 | INFO     | time since job start (91478s) is within the limit (172800.0s)
[2025-11-21 21:35:40] 2025-11-21 20:34:29,323 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,323 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,323 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,324 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,324 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,324 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,324 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,325 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,325 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,325 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,325 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:35:40] 2025-11-21 20:34:29,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,325 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:35:40] 2025-11-21 20:34:29,326 | INFO     | job 6891561646 has completed (purged errors)
[2025-11-21 21:35:40] 2025-11-21 20:34:29,326 | INFO     | overall cleanup function is called
[2025-11-21 21:35:40] 2025-11-21 20:34:30,353 | INFO     | --- collectZombieJob: --- 10, [23057]
[2025-11-21 21:35:40] 2025-11-21 20:34:30,354 | INFO     | zombie collector waiting for pid 23057
[2025-11-21 21:35:40] 2025-11-21 20:34:30,354 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:35:40] 2025-11-21 20:34:30,354 | INFO     | collected zombie processes
[2025-11-21 21:35:40] 2025-11-21 20:34:30,354 | INFO     | will attempt to kill all subprocesses of pid=23057
[2025-11-21 21:35:40] 2025-11-21 20:34:30,478 | INFO     | process IDs to be killed: [23057] (in reverse order)
[2025-11-21 21:35:40] 2025-11-21 20:34:31,091 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:35:40] 2025-11-21 20:34:31,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:35:40] 2025-11-21 20:34:31,095 | INFO     | did not find any defunct processes belonging to 23057
[2025-11-21 21:35:40] 2025-11-21 20:34:31,102 | INFO     | did not find any defunct processes belonging to 23057
[2025-11-21 21:35:40] 2025-11-21 20:34:31,105 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:35:40] 2025-11-21 20:34:31,105 | INFO     | ready for new job
[2025-11-21 21:35:40] 2025-11-21 20:34:31,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:35:40] 2025-11-21 20:34:31,112 | INFO     | ***************************************
[2025-11-21 21:35:40] 2025-11-21 20:34:31,112 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:35:40] 2025-11-21 20:34:31,112 | INFO     | ***************************************
[2025-11-21 21:35:40] 2025-11-21 20:34:31,113 | INFO     | 
[2025-11-21 21:35:40] 2025-11-21 20:34:31,113 | INFO     | pilot is running in a VM
[2025-11-21 21:35:40] 2025-11-21 20:34:31,113 | INFO     | architecture information:
[2025-11-21 21:35:40] 2025-11-21 20:34:31,114 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:35:40] 2025-11-21 20:34:31,136 | INFO     | cat /etc/os-release:
[2025-11-21 21:35:40] NAME="CentOS Linux"
[2025-11-21 21:35:40] VERSION="7 (Core)"
[2025-11-21 21:35:40] ID="centos"
[2025-11-21 21:35:40] ID_LIKE="rhel fedora"
[2025-11-21 21:35:40] VERSION_ID="7"
[2025-11-21 21:35:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:35:40] ANSI_COLOR="0;31"
[2025-11-21 21:35:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:35:40] HOME_URL="https://www.centos.org/"
[2025-11-21 21:35:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:35:40] 
[2025-11-21 21:35:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:35:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:35:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:35:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:35:40] 
[2025-11-21 21:35:40] 2025-11-21 20:34:31,137 | INFO     | ***************************************
[2025-11-21 21:35:40] 2025-11-21 20:34:31,641 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-21 21:35:40] 2025-11-21 20:34:31,932 | INFO     | sufficient remaining disk space (495068381184 B)
[2025-11-21 21:35:40] 2025-11-21 20:34:31,932 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:35:40] 2025-11-21 20:34:31,933 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:35:40] 2025-11-21 20:34:31,933 | INFO     | update_server=False
[2025-11-21 21:35:40] 2025-11-21 20:34:31,933 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:35:40] 2025-11-21 20:34:31,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:35:40] 2025-11-21 20:34:31,933 | INFO     | aborting loop
[2025-11-21 21:35:40] 2025-11-21 20:34:32,298 | INFO     | all payload control threads have been joined
[2025-11-21 21:35:40] 2025-11-21 20:34:32,343 | INFO     | all data control threads have been joined
[2025-11-21 21:35:40] 2025-11-21 20:34:32,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:35:40] 2025-11-21 20:34:32,939 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:32,940 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:32,960 | INFO     | [job] validate thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:33,245 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:33,305 | INFO     | [payload] control thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:33,350 | INFO     | [data] control thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:33,354 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:33,372 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:33,524 | INFO     | all job control threads have been joined
[2025-11-21 21:35:40] 2025-11-21 20:34:33,529 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:33,770 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:33,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:35:40] 2025-11-21 20:34:33,878 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:34,426 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:34,530 | INFO     | [job] control thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:34,880 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:34,907 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:34:35,097 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:35:40] 2025-11-21 20:34:39,106 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:35:40] 2025-11-21 20:35:02,255 | INFO     | PID=16439 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 21:35:40] 2025-11-21 20:35:02,255 | INFO     | .. there are 9 such processes running
[2025-11-21 21:35:40] 2025-11-21 20:35:02,255 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:35:40] 2025-11-21 20:35:02,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:35:40] 2025-11-21 20:35:02,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:35:40] 2025-11-21 20:35:31,025 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:35:40] 2025-11-21 20:35:31,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139692676781888)>', '<ExcThread(monitor, started 139692225832704)>']
[2025-11-21 21:35:40] 2025-11-21 20:35:31,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:35:40] 2025-11-21 20:35:31,429 | INFO     | [monitor] control thread has ended
[2025-11-21 21:35:40] 2025-11-21 20:35:36,446 | INFO     | all workflow threads have been joined
[2025-11-21 21:35:40] 2025-11-21 20:35:36,447 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:35:40] 2025-11-21 20:35:36,447 | INFO     | traces error code: 0
[2025-11-21 21:35:40] 2025-11-21 20:35:36,447 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:35:40] 2025-11-21 20:35:36,704 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:35:40] 2025-11-21 20:35:36,782 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:35:40] 2025-11-21 20:35:36,860 [wrapper] pilotpid: 16439
[2025-11-21 21:35:40] 2025-11-21 20:35:36,877 [wrapper] Pilot exit status: 0
[2025-11-21 21:35:40] 2025-11-21 20:35:37,370 [wrapper] pandaids: 6891561646
[2025-11-21 21:35:40] 2025-11-21 20:35:37,548 [wrapper] cleanup supervisor_pilot 17802 16440
[2025-11-21 21:35:40] 2025-11-21 20:35:37,688 [wrapper] Test setup, not cleaning
[2025-11-21 21:35:40] 2025-11-21 20:35:37,801 [wrapper] apfmon messages muted
[2025-11-21 21:35:40] 2025-11-21 20:35:37,905 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:35:40] 2025-11-21 20:35:38,039 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:35:40]  *** Error codes and diagnostics ***
[2025-11-21 21:35:40]     "exeErrorCode": 0,
[2025-11-21 21:35:40]     "exeErrorDiag": "",
[2025-11-21 21:35:40]     "pilotErrorCode": 0,
[2025-11-21 21:35:40]     "pilotErrorDiag": "",
[2025-11-21 21:35:40]  *** Listing of results directory ***
[2025-11-21 21:35:40] total 1335324
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 21:35:40] -rwx------. 1 boinc boinc     36292 Nov 18 16:27 runpilot2-wrapper.sh
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc       100 Nov 20 20:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:35:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 20:06 run_atlas
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc       105 Nov 20 20:06 job.xml
[2025-11-21 21:35:40] -rw-r--r--. 2 boinc boinc 410091759 Nov 20 20:06 EVNT.47493065._000092.pool.root.1
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc      6390 Nov 20 20:06 init_data.xml
[2025-11-21 21:35:40] -rw-r--r--. 2 boinc boinc    590100 Nov 20 20:06 input.tar.gz
[2025-11-21 21:35:40] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:06 start_atlas.sh
[2025-11-21 21:35:40] drwxrwx--x. 2 boinc boinc        68 Nov 20 20:06 shared
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc         0 Nov 20 20:06 boinc_lockfile
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc      2771 Nov 20 20:06 pandaJob.out
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc    989440 Nov 20 20:09 agis_schedconf.cvmfs.json
[2025-11-21 21:35:40] drwx------. 5 boinc boinc      4096 Nov 20 20:09 pilot3
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc       533 Nov 21 21:20 boinc_task_state.xml
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc 923829136 Nov 21 21:32 HITS.47493068._000916.pool.root.1
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc      1034 Nov 21 21:33 memory_monitor_summary.json
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc   1526164 Nov 21 21:33 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc   2561699 Nov 21 21:33 log.47493068._000916.job.log.tgz.1
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc        95 Nov 21 21:34 pilot_heartbeat.json
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc      8627 Nov 21 21:34 heartbeat.json
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc      8192 Nov 21 21:35 boinc_mmap_file
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc        29 Nov 21 21:35 wrapper_checkpoint.txt
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc      4884 Nov 21 21:35 pilotlog.txt
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc  12209814 Nov 21 21:35 log.47493068._000916.job.log.1
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc       353 Nov 21 21:35 output.list
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc       620 Nov 21 21:35 runtime_log
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc  14786560 Nov 21 21:35 result.tar.gz
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc      8703 Nov 21 21:35 runtime_log.err
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc       662 Nov 21 21:35 aorNDmRncf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkPFKDm9Api9n.diag
[2025-11-21 21:35:40] -rw-r--r--. 1 boinc boinc     20910 Nov 21 21:35 stderr.txt
[2025-11-21 21:35:40] HITS file was successfully produced:
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc 923829136 Nov 21 21:32 shared/HITS.pool.root.1
[2025-11-21 21:35:40]  *** Contents of shared directory: ***
[2025-11-21 21:35:40] total 1317700
[2025-11-21 21:35:40] -rw-r--r--. 2 boinc boinc 410091759 Nov 20 20:06 ATLAS.root_0
[2025-11-21 21:35:40] -rw-r--r--. 2 boinc boinc    590100 Nov 20 20:06 input.tar.gz
[2025-11-21 21:35:40] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:06 start_atlas.sh
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc 923829136 Nov 21 21:32 HITS.pool.root.1
[2025-11-21 21:35:40] -rw-------. 1 boinc boinc  14786560 Nov 21 21:35 result.tar.gz
21:35:41 (12662): run_atlas exited; CPU time 339995.446186
21:35:41 (12662): called boinc_finish(0)

</stderr_txt>
]]>

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