Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:37:16 (17028): wrapper (7.7.26015): starting
18:37:16 (17028): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:37:16] Arguments: --nthreads 8
[2025-11-19 18:37:16] Threads: 8
[2025-11-19 18:37:16] Checking for CVMFS
[2025-11-19 18:37:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:37:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:37:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:37:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:37:19] 2.11.2.0 6428 275425 144428 153052 3 85 19692671 25165825 4632 130560 3 136827595 99.873 82856698 3266 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:37:19] CVMFS is ok
[2025-11-19 18:37:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:37:19] Checking for apptainer binary...
[2025-11-19 18:37:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:37:19] Running /usr/bin/apptainer --version
[2025-11-19 18:37:19] apptainer version 1.3.2-1.el7
[2025-11-19 18:37:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:37:22] cg-vwn335.simple-grid.lan
[2025-11-19 18:37:22] apptainer works
[2025-11-19 18:37:22] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:37:22] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:37:22] Starting ATLAS job with PandaID=6891561642
[2025-11-19 18:37:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:06:00]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:06:00] 2025-11-20 19:05:06,349 | INFO     | intersect: -8508084739.150619
[2025-11-20 20:06:00] 2025-11-20 19:05:06,351 | INFO     | chi2: 17.383030971786614
[2025-11-20 20:06:00] 2025-11-20 19:05:06,354 | INFO     | sum of square deviations: 1017500170837.206
[2025-11-20 20:06:00] 2025-11-20 19:05:06,418 | INFO     | sum of deviations: 5457845588425.902
[2025-11-20 20:06:00] 2025-11-20 19:05:06,418 | INFO     | mean x: 1763619876.8405113
[2025-11-20 20:06:00] 2025-11-20 19:05:06,419 | INFO     | mean y: 2862653.602960969
[2025-11-20 20:06:00] 2025-11-20 19:05:06,419 | INFO     | intersect: -9457150465.170511
[2025-11-20 20:06:00] 2025-11-20 19:05:06,420 | INFO     | chi2: 14.308837219900477
[2025-11-20 20:06:00] 2025-11-20 19:05:06,420 | INFO     | current chi2=14.308837219900477 (change=17.685027178952172 %)
[2025-11-20 20:06:00] 2025-11-20 19:05:06,421 | INFO     | right removable region: 1485
[2025-11-20 20:06:00] 2025-11-20 19:05:06,423 | INFO     | sum of square deviations: 1017498955717.2064
[2025-11-20 20:06:00] 2025-11-20 19:05:06,486 | INFO     | sum of deviations: 4334030614443.7266
[2025-11-20 20:06:00] 2025-11-20 19:05:06,487 | INFO     | mean x: 1763620181.8405113
[2025-11-20 20:06:00] 2025-11-20 19:05:06,487 | INFO     | mean y: 2864549.5726783313
[2025-11-20 20:06:00] 2025-11-20 19:05:06,487 | INFO     | intersect: -7509264890.363543
[2025-11-20 20:06:00] 2025-11-20 19:05:06,489 | INFO     | chi2: 12.590785311531675
[2025-11-20 20:06:00] 2025-11-20 19:05:06,489 | INFO     | current chi2=12.590785311531675 (change=27.56852742213342 %)
[2025-11-20 20:06:00] 2025-11-20 19:05:06,491 | INFO     | sum of square deviations: 1007261998080.6855
[2025-11-20 20:06:00] 2025-11-20 19:05:06,551 | INFO     | sum of deviations: 3767801818562.5596
[2025-11-20 20:06:00] 2025-11-20 19:05:06,552 | INFO     | mean x: 1763620334.3450372
[2025-11-20 20:06:00] 2025-11-20 19:05:06,552 | INFO     | mean y: 2872984.5449020932
[2025-11-20 20:06:00] 2025-11-20 19:05:06,552 | INFO     | intersect: -6594191052.082094
[2025-11-20 20:06:00] 2025-11-20 19:05:06,554 | INFO     | chi2: 8.79378959215728
[2025-11-20 20:06:00] 2025-11-20 19:05:06,554 | INFO     | current chi2=8.79378959215728 (change=30.15694117107052 %)
[2025-11-20 20:06:00] 2025-11-20 19:05:06,556 | INFO     | sum of square deviations: 997093925456.6088
[2025-11-20 20:06:00] 2025-11-20 19:05:06,616 | INFO     | sum of deviations: 3254070243518.5767
[2025-11-20 20:06:00] 2025-11-20 19:05:06,620 | INFO     | mean x: 1763620486.8495934
[2025-11-20 20:06:00] 2025-11-20 19:05:06,620 | INFO     | mean y: 2880689.885501355
[2025-11-20 20:06:00] 2025-11-20 19:05:06,620 | INFO     | intersect: -5752790667.242582
[2025-11-20 20:06:00] 2025-11-20 19:05:06,621 | INFO     | chi2: 5.747515574342294
[2025-11-20 20:06:00] 2025-11-20 19:05:06,622 | INFO     | current chi2=5.747515574342294 (change=34.6411974711312 %)
[2025-11-20 20:06:00] 2025-11-20 19:05:06,624 | INFO     | sum of square deviations: 986994774905.591
[2025-11-20 20:06:00] 2025-11-20 19:05:06,644 | INFO     | time since job start (91434s) is within the limit (172800.0s)
[2025-11-20 20:06:00] 2025-11-20 19:05:06,682 | INFO     | sum of deviations: 2986494683035.635
[2025-11-20 20:06:00] 2025-11-20 19:05:06,683 | INFO     | mean x: 1763620639.3521414
[2025-11-20 20:06:00] 2025-11-20 19:05:06,683 | INFO     | mean y: 2884726.6879673693
[2025-11-20 20:06:00] 2025-11-20 19:05:06,683 | INFO     | intersect: -5333560608.416148
[2025-11-20 20:06:00] 2025-11-20 19:05:06,685 | INFO     | chi2: 4.80250865042981
[2025-11-20 20:06:00] 2025-11-20 19:05:06,685 | INFO     | current chi2=4.80250865042981 (change=16.442007188829997 %)
[2025-11-20 20:06:00] 2025-11-20 19:05:06,685 | INFO     | left removable region: 40
[2025-11-20 20:06:00] 2025-11-20 19:05:06,687 | INFO     | sum of square deviations: 935579431729.7388
[2025-11-20 20:06:00] 2025-11-20 19:05:06,748 | INFO     | sum of deviations: 3290261003292.15
[2025-11-20 20:06:00] 2025-11-20 19:05:06,748 | INFO     | mean x: 1763621066.3570933
[2025-11-20 20:06:00] 2025-11-20 19:05:06,748 | INFO     | mean y: 2898451.053979239
[2025-11-20 20:06:00] 2025-11-20 19:05:06,749 | INFO     | intersect: -6199432876.913384
[2025-11-20 20:06:00] 2025-11-20 19:05:06,750 | INFO     | chi2: 0.8967119361515874
[2025-11-20 20:06:00] 2025-11-20 19:05:06,750 | INFO     | current memory leak: 3.52 B/s (using 1445 data points, chi2=0.90)
[2025-11-20 20:06:00] 2025-11-20 19:05:06,753 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 20:06:00] 2025-11-20 19:05:06,753 | INFO     | ..............................
[2025-11-20 20:06:00] 2025-11-20 19:05:06,753 | INFO     | . Timing measurements:
[2025-11-20 20:06:00] 2025-11-20 19:05:06,754 | INFO     | . get job = 0 s
[2025-11-20 20:06:00] 2025-11-20 19:05:06,754 | INFO     | . initial setup = 14 s
[2025-11-20 20:06:00] 2025-11-20 19:05:06,754 | INFO     | . payload setup = 158 s
[2025-11-20 20:06:00] 2025-11-20 19:05:06,754 | INFO     | . stage-in = 0 s
[2025-11-20 20:06:00] 2025-11-20 19:05:06,754 | INFO     | . payload execution = 91061 s
[2025-11-20 20:06:00] 2025-11-20 19:05:06,754 | INFO     | . stage-out = 4 s
[2025-11-20 20:06:00] 2025-11-20 19:05:06,754 | INFO     | . log creation = 1 s
[2025-11-20 20:06:00] 2025-11-20 19:05:06,754 | INFO     | ..............................
[2025-11-20 20:06:00] 2025-11-20 19:05:07,360 | INFO     | 
[2025-11-20 20:06:00] 2025-11-20 19:05:07,360 | INFO     | job summary report
[2025-11-20 20:06:00] 2025-11-20 19:05:07,360 | INFO     | --------------------------------------------------
[2025-11-20 20:06:00] 2025-11-20 19:05:07,360 | INFO     | PanDA job id: 6891561642
[2025-11-20 20:06:00] 2025-11-20 19:05:07,360 | INFO     | task id: 47493068
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | errors: (none)
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | pilot state: finished 
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | transexitcode: 0
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | exeerrorcode: 0
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | exeerrordiag: 
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | exitcode: 0
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | exitmsg: OK
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | cpuconsumptiontime: 335833 s
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | nevents: 1000
[2025-11-20 20:06:00] 2025-11-20 19:05:07,361 | INFO     | neventsw: 0
[2025-11-20 20:06:00] 2025-11-20 19:05:07,362 | INFO     | pid: 27403
[2025-11-20 20:06:00] 2025-11-20 19:05:07,362 | INFO     | pgrp: 27403
[2025-11-20 20:06:00] 2025-11-20 19:05:07,362 | INFO     | corecount: 8
[2025-11-20 20:06:00] 2025-11-20 19:05:07,362 | INFO     | event service: False
[2025-11-20 20:06:00] 2025-11-20 19:05:07,362 | INFO     | sizes: {0: 2296368, 1: 2297053, 2: 2297252, 13: 2297252, 24: 2297308, 34: 2297336, 45: 2297492, 56: 2297520, 67: 2297548, 77: 2297576, 88: 2297632, 94: 2298202, 99
[2025-11-20 20:06:00] 2025-11-20 19:05:07,362 | INFO     | --------------------------------------------------
[2025-11-20 20:06:00] 2025-11-20 19:05:07,362 | INFO     | 
[2025-11-20 20:06:00] 2025-11-20 19:05:07,362 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-20 20:06:00] 2025-11-20 19:05:07,405 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,405 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,405 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,405 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,405 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,405 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,407 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:06:00] 2025-11-20 19:05:07,407 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,407 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:06:00] 2025-11-20 19:05:07,407 | INFO     | job 6891561642 has completed (purged errors)
[2025-11-20 20:06:00] 2025-11-20 19:05:07,407 | INFO     | overall cleanup function is called
[2025-11-20 20:06:00] 2025-11-20 19:05:07,766 | INFO     | PID=20823 has CPU usage=18.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 20:06:00] 2025-11-20 19:05:07,766 | INFO     | .. there are 9 such processes running
[2025-11-20 20:06:00] 2025-11-20 19:05:08,426 | INFO     | --- collectZombieJob: --- 10, [27403]
[2025-11-20 20:06:00] 2025-11-20 19:05:08,427 | INFO     | zombie collector waiting for pid 27403
[2025-11-20 20:06:00] 2025-11-20 19:05:08,427 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:06:00] 2025-11-20 19:05:08,427 | INFO     | collected zombie processes
[2025-11-20 20:06:00] 2025-11-20 19:05:08,427 | INFO     | will attempt to kill all subprocesses of pid=27403
[2025-11-20 20:06:00] 2025-11-20 19:05:08,541 | INFO     | process IDs to be killed: [27403] (in reverse order)
[2025-11-20 20:06:00] 2025-11-20 19:05:08,738 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:06:00] 2025-11-20 19:05:08,739 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:06:00] 2025-11-20 19:05:08,742 | INFO     | did not find any defunct processes belonging to 27403
[2025-11-20 20:06:00] 2025-11-20 19:05:08,746 | INFO     | did not find any defunct processes belonging to 27403
[2025-11-20 20:06:00] 2025-11-20 19:05:08,755 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:06:00] 2025-11-20 19:05:08,755 | INFO     | ready for new job
[2025-11-20 20:06:00] 2025-11-20 19:05:08,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:06:00] 2025-11-20 19:05:08,763 | INFO     | ***************************************
[2025-11-20 20:06:00] 2025-11-20 19:05:08,764 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:06:00] 2025-11-20 19:05:08,764 | INFO     | ***************************************
[2025-11-20 20:06:00] 2025-11-20 19:05:08,764 | INFO     | 
[2025-11-20 20:06:00] 2025-11-20 19:05:08,765 | INFO     | pilot is running in a VM
[2025-11-20 20:06:00] 2025-11-20 19:05:08,765 | INFO     | architecture information:
[2025-11-20 20:06:00] 2025-11-20 19:05:08,768 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:06:00] 2025-11-20 19:05:08,830 | INFO     | cat /etc/os-release:
[2025-11-20 20:06:00] NAME="CentOS Linux"
[2025-11-20 20:06:00] VERSION="7 (Core)"
[2025-11-20 20:06:00] ID="centos"
[2025-11-20 20:06:00] ID_LIKE="rhel fedora"
[2025-11-20 20:06:00] VERSION_ID="7"
[2025-11-20 20:06:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:06:00] ANSI_COLOR="0;31"
[2025-11-20 20:06:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:06:00] HOME_URL="https://www.centos.org/"
[2025-11-20 20:06:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:06:00] 
[2025-11-20 20:06:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:06:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:06:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:06:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:06:00] 
[2025-11-20 20:06:00] 2025-11-20 19:05:08,830 | INFO     | ***************************************
[2025-11-20 20:06:00] 2025-11-20 19:05:09,334 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-20 20:06:00] 2025-11-20 19:05:09,370 | INFO     | sufficient remaining disk space (494985543680 B)
[2025-11-20 20:06:00] 2025-11-20 19:05:09,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:06:00] 2025-11-20 19:05:09,371 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:06:00] 2025-11-20 19:05:09,371 | INFO     | update_server=False
[2025-11-20 20:06:00] 2025-11-20 19:05:09,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:06:00] 2025-11-20 19:05:09,625 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 20:06:00] 2025-11-20 19:05:09,626 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 20:06:00] 2025-11-20 19:05:09,626 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:06:00] 2025-11-20 19:05:09,626 | INFO     | will abort loop
[2025-11-20 20:06:00] 2025-11-20 19:05:09,651 | INFO     | all payload control threads have been joined
[2025-11-20 20:06:00] 2025-11-20 19:05:09,958 | INFO     | all job control threads have been joined
[2025-11-20 20:06:00] 2025-11-20 19:05:10,300 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:06:00] 2025-11-20 19:05:10,377 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:10,467 | INFO     | all data control threads have been joined
[2025-11-20 20:06:00] 2025-11-20 19:05:10,632 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:10,657 | INFO     | [payload] control thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:10,783 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:10,964 | INFO     | [job] control thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:11,094 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:11,334 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:11,373 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:11,384 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:11,473 | INFO     | [data] control thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:11,633 | INFO     | [job] validate thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:11,861 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:11,892 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:06:00] 2025-11-20 19:05:11,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:06:00] 2025-11-20 19:05:12,307 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:12,898 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:15,929 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:20,315 | INFO     | job.realtimelogging is not enabled
[2025-11-20 20:06:00] 2025-11-20 19:05:21,319 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:06:00] 2025-11-20 19:05:39,962 | INFO     | PID=20823 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:06:00] 2025-11-20 19:05:39,962 | INFO     | .. there are 9 such processes running
[2025-11-20 20:06:00] 2025-11-20 19:05:39,970 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:06:00] 2025-11-20 19:05:39,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:06:00] 2025-11-20 19:05:39,970 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:06:00] 2025-11-20 19:05:50,911 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:06:00] 2025-11-20 19:05:52,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219029665600)>', '<ExcThread(monitor, started 140218443220736)>']
[2025-11-20 20:06:00] 2025-11-20 19:05:53,046 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:06:00] 2025-11-20 19:05:53,047 | INFO     | [monitor] control thread has ended
[2025-11-20 20:06:00] 2025-11-20 19:05:57,110 | INFO     | all workflow threads have been joined
[2025-11-20 20:06:00] 2025-11-20 19:05:57,111 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:06:00] 2025-11-20 19:05:57,111 | INFO     | traces error code: 0
[2025-11-20 20:06:00] 2025-11-20 19:05:57,111 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:06:00] 2025-11-20 19:05:57,443 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:06:00] 2025-11-20 19:05:57,447 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:06:00] 2025-11-20 19:05:57,451 [wrapper] pilotpid: 20823
[2025-11-20 20:06:00] 2025-11-20 19:05:57,465 [wrapper] Pilot exit status: 0
[2025-11-20 20:06:00] 2025-11-20 19:05:57,501 [wrapper] pandaids: 6891561642
[2025-11-20 20:06:00] 2025-11-20 19:05:57,550 [wrapper] cleanup supervisor_pilot 24150 20824
[2025-11-20 20:06:00] 2025-11-20 19:05:57,558 [wrapper] Test setup, not cleaning
[2025-11-20 20:06:00] 2025-11-20 19:05:57,581 [wrapper] apfmon messages muted
[2025-11-20 20:06:00] 2025-11-20 19:05:57,673 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:06:00] 2025-11-20 19:05:57,758 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:06:00]  *** Error codes and diagnostics ***
[2025-11-20 20:06:00]     "exeErrorCode": 0,
[2025-11-20 20:06:00]     "exeErrorDiag": "",
[2025-11-20 20:06:00]     "pilotErrorCode": 0,
[2025-11-20 20:06:00]     "pilotErrorDiag": "",
[2025-11-20 20:06:00]  *** Listing of results directory ***
[2025-11-20 20:06:00] total 1323640
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:06:00] -rwx------. 1 boinc boinc     36292 Nov 18 16:27 runpilot2-wrapper.sh
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:06:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:37 run_atlas
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:37 job.xml
[2025-11-20 20:06:00] -rw-r--r--. 2 boinc boinc 410091759 Nov 19 18:37 EVNT.47493065._000092.pool.root.1
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc      6389 Nov 19 18:37 init_data.xml
[2025-11-20 20:06:00] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:37 start_atlas.sh
[2025-11-20 20:06:00] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:37 shared
[2025-11-20 20:06:00] -rw-r--r--. 2 boinc boinc    590097 Nov 19 18:37 input.tar.gz
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:37 boinc_lockfile
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc      2771 Nov 19 18:37 pandaJob.out
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc    989434 Nov 19 18:41 agis_schedconf.cvmfs.json
[2025-11-20 20:06:00] drwx------. 5 boinc boinc      4096 Nov 19 18:41 pilot3
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:50 boinc_task_state.xml
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc 911876100 Nov 20 20:04 HITS.47493068._000912.pool.root.1
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc      1034 Nov 20 20:04 memory_monitor_summary.json
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc   1526164 Nov 20 20:04 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc   2569736 Nov 20 20:04 log.47493068._000912.job.log.tgz.1
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc      8641 Nov 20 20:05 heartbeat.json
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc        95 Nov 20 20:05 pilot_heartbeat.json
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:05 boinc_mmap_file
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:05 wrapper_checkpoint.txt
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc      5142 Nov 20 20:05 pilotlog.txt
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc  12192330 Nov 20 20:05 log.47493068._000912.job.log.1
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc       353 Nov 20 20:05 output.list
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:05 runtime_log
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc  14786560 Nov 20 20:05 result.tar.gz
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc       662 Nov 20 20:05 ZamNDmRncf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgPFKDmx97xMm.diag
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc      8703 Nov 20 20:05 runtime_log.err
[2025-11-20 20:06:00] -rw-r--r--. 1 boinc boinc     21032 Nov 20 20:06 stderr.txt
[2025-11-20 20:06:00] HITS file was successfully produced:
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc 911876100 Nov 20 20:04 shared/HITS.pool.root.1
[2025-11-20 20:06:00]  *** Contents of shared directory: ***
[2025-11-20 20:06:00] total 1306028
[2025-11-20 20:06:00] -rw-r--r--. 2 boinc boinc 410091759 Nov 19 18:37 ATLAS.root_0
[2025-11-20 20:06:00] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:37 start_atlas.sh
[2025-11-20 20:06:00] -rw-r--r--. 2 boinc boinc    590097 Nov 19 18:37 input.tar.gz
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc 911876100 Nov 20 20:04 HITS.pool.root.1
[2025-11-20 20:06:00] -rw-------. 1 boinc boinc  14786560 Nov 20 20:05 result.tar.gz
20:06:01 (17028): run_atlas exited; CPU time 336336.874338
20:06:01 (17028): called boinc_finish(0)

</stderr_txt>
]]>

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