Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:41:09 (844001): wrapper (7.7.26015): starting
16:41:09 (844001): wrapper: running run_atlas (--nthreads 4)
[2025-11-18 16:41:09] Arguments: --nthreads 4
[2025-11-18 16:41:09] Threads: 4
[2025-11-18 16:41:09] Checking for CVMFS
[2025-11-18 16:41:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 16:41:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 16:41:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 16:41:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 16:41:10] 2.9.2.0 844198 0 30068 153004 4 1 32688007 36864001 0 130560 0 0 0.000 1292 49692 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-18 16:41:10] CVMFS is ok
[2025-11-18 16:41:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 16:41:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 16:41:10] Further information can be found at the LHC@home message board.
[2025-11-18 16:41:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 16:41:10] Checking for apptainer binary...
[2025-11-18 16:41:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 16:41:10] Running /usr/bin/apptainer --version
[2025-11-18 16:41:10] apptainer version 1.4.1-1.1
[2025-11-18 16:41:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 16:41:10] thA309
[2025-11-18 16:41:10] apptainer works
[2025-11-18 16:41:10] Set ATHENA_PROC_NUMBER=4
[2025-11-18 16:41:10] Set ATHENA_CORE_NUMBER=4
[2025-11-18 16:41:10] Starting ATLAS job with PandaID=6891561655
[2025-11-18 16:41:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 23:38:00]  *** The last 200 lines of the pilot log: ***
[2025-11-18 23:38:00] 2025-11-18 22:37:30,621 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 23:38:00] 2025-11-18 22:37:30,621 | INFO     | ready for new job
[2025-11-18 23:38:00] 2025-11-18 22:37:30,621 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 23:38:00] 2025-11-18 22:37:30,622 | INFO     | ***************************************
[2025-11-18 23:38:00] 2025-11-18 22:37:30,623 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 23:38:00] 2025-11-18 22:37:30,623 | INFO     | ***************************************
[2025-11-18 23:38:00] 2025-11-18 22:37:30,623 | INFO     | 
[2025-11-18 23:38:00] 2025-11-18 22:37:30,623 | INFO     | architecture information:
[2025-11-18 23:38:00] 2025-11-18 22:37:30,623 | INFO     | executing command: cat /etc/os-release
[2025-11-18 23:38:00] 2025-11-18 22:37:30,638 | INFO     | cat /etc/os-release:
[2025-11-18 23:38:00] NAME="CentOS Linux"
[2025-11-18 23:38:00] VERSION="7 (Core)"
[2025-11-18 23:38:00] ID="centos"
[2025-11-18 23:38:00] ID_LIKE="rhel fedora"
[2025-11-18 23:38:00] VERSION_ID="7"
[2025-11-18 23:38:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 23:38:00] ANSI_COLOR="0;31"
[2025-11-18 23:38:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 23:38:00] HOME_URL="https://www.centos.org/"
[2025-11-18 23:38:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 23:38:00] 
[2025-11-18 23:38:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 23:38:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 23:38:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 23:38:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 23:38:00] 
[2025-11-18 23:38:00] 2025-11-18 22:37:30,639 | INFO     | ***************************************
[2025-11-18 23:38:00] 2025-11-18 22:37:31,142 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-18 23:38:00] 2025-11-18 22:37:31,160 | INFO     | sufficient remaining disk space (224720322560 B)
[2025-11-18 23:38:00] 2025-11-18 22:37:31,160 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 23:38:00] 2025-11-18 22:37:31,160 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 23:38:00] 2025-11-18 22:37:31,160 | INFO     | update_server=False
[2025-11-18 23:38:00] 2025-11-18 22:37:31,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 23:38:00] 2025-11-18 22:37:31,472 | INFO     | all payload control threads have been joined
[2025-11-18 23:38:00] 2025-11-18 22:37:31,517 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-18 23:38:00] 2025-11-18 22:37:31,517 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-18 23:38:00] 2025-11-18 22:37:31,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 23:38:00] 2025-11-18 22:37:31,518 | INFO     | will abort loop
[2025-11-18 23:38:00] 2025-11-18 22:37:31,767 | INFO     | all data control threads have been joined
[2025-11-18 23:38:00] 2025-11-18 22:37:32,166 | INFO     | [job] retrieve thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:32,215 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:32,249 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 23:38:00] 2025-11-18 22:37:32,255 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:32,429 | INFO     | all job control threads have been joined
[2025-11-18 23:38:00] 2025-11-18 22:37:32,478 | INFO     | [payload] control thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:32,523 | INFO     | [job] job monitor thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:32,593 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:32,648 | INFO     | [payload] validate_post thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:32,773 | INFO     | [data] control thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:33,045 | INFO     | [data] copytool_in thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:33,260 | INFO     | [payload] failed_post thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:33,406 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:33,435 | INFO     | [job] control thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:33,568 | INFO     | [job] validate thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:34,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 23:38:00] 2025-11-18 22:37:34,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 23:38:00] 2025-11-18 22:37:34,256 | INFO     | [data] copytool_out thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:35,148 | INFO     | [job] queue monitor thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:38,139 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 23:38:00] 2025-11-18 22:37:51,515 | INFO     | [monitor] cgroup control has ended
[2025-11-18 23:38:00] 2025-11-18 22:37:51,973 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140329839646528)>', '<ExcThread(monitor, started 140328459826944)>']
[2025-11-18 23:38:00] 2025-11-18 22:37:56,999 | INFO     | all workflow threads have been joined
[2025-11-18 23:38:00] 2025-11-18 22:37:56,999 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 23:38:00] 2025-11-18 22:37:57,000 | INFO     | traces error code: 0
[2025-11-18 23:38:00] 2025-11-18 22:37:57,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 23:38:00] 2025-11-18 22:38:00,760 | INFO     | PID=848354 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-18 23:38:00] 2025-11-18 22:38:00,761 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 23:38:00] 2025-11-18 22:38:00,761 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 23:38:00] 2025-11-18 22:38:00,761 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 23:38:00] 2025-11-18 22:38:00,761 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 23:38:00] 2025-11-18 22:38:00,761 | CRITICAL | thread 'MainThread' is not alive
[2025-11-18 23:38:00] 2025-11-18 22:38:00,761 | INFO     | [monitor] control thread has ended
[2025-11-18 23:38:00] 2025-11-18 22:38:00,840 [wrapper] ==== pilot stdout END ====
[2025-11-18 23:38:00] 2025-11-18 22:38:00,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 23:38:00] 2025-11-18 22:38:00,849 [wrapper] pilotpid: 848354
[2025-11-18 23:38:00] 2025-11-18 22:38:00,853 [wrapper] Pilot exit status: 0
[2025-11-18 23:38:00] 2025-11-18 22:38:00,864 [wrapper] pandaids: 6891561655
[2025-11-18 23:38:00] 2025-11-18 22:38:00,888 [wrapper] cleanup supervisor_pilot  903193 848355
[2025-11-18 23:38:00] 2025-11-18 22:38:00,892 [wrapper] Test setup, not cleaning
[2025-11-18 23:38:00] 2025-11-18 22:38:00,896 [wrapper] apfmon messages muted
[2025-11-18 23:38:00] 2025-11-18 22:38:00,901 [wrapper] ==== wrapper stdout END ====
[2025-11-18 23:38:00] 2025-11-18 22:38:00,905 [wrapper] ==== wrapper stderr END ====
[2025-11-18 23:38:00]  *** Error codes and diagnostics ***
[2025-11-18 23:38:00]     "exeErrorCode": 0,
[2025-11-18 23:38:00]     "exeErrorDiag": "",
[2025-11-18 23:38:00]     "pilotErrorCode": 0,
[2025-11-18 23:38:00]     "pilotErrorDiag": "",
[2025-11-18 23:38:00]  *** Listing of results directory ***
[2025-11-18 23:38:00] total 1297320
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-18 23:38:00] -rwx------ 1 boinc boinc     36292 Nov 18 16:27 runpilot2-wrapper.sh
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc       100 Nov 18 16:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 23:38:00] -rwxr-xr-x 1 boinc boinc      7986 Nov 18 16:41 run_atlas
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc       105 Nov 18 16:41 job.xml
[2025-11-18 23:38:00] -rw-r--r-- 2 boinc boinc 409559866 Nov 18 16:41 EVNT.47493065._000093.pool.root.1
[2025-11-18 23:38:00] -rw-r--r-- 2 boinc boinc    590101 Nov 18 16:41 input.tar.gz
[2025-11-18 23:38:00] -rw-r--r-- 2 boinc boinc     15120 Nov 18 16:41 start_atlas.sh
[2025-11-18 23:38:00] drwxrwx--x 2 boinc boinc      4096 Nov 18 16:41 shared
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc         0 Nov 18 16:41 boinc_setup_complete
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc      6375 Nov 18 16:41 init_data.xml
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc         0 Nov 18 16:41 boinc_lockfile
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc      2771 Nov 18 16:41 pandaJob.out
[2025-11-18 23:38:00] -rw------- 1 boinc boinc    992766 Nov 18 16:41 agis_schedconf.cvmfs.json
[2025-11-18 23:38:00] drwx------ 5 boinc boinc      4096 Nov 18 16:41 pilot3
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc       531 Nov 18 23:33 boinc_task_state.xml
[2025-11-18 23:38:00] -rw------- 1 boinc boinc 905436332 Nov 18 23:37 HITS.47493068._000925.pool.root.1
[2025-11-18 23:38:00] -rw------- 1 boinc boinc      1034 Nov 18 23:37 memory_monitor_summary.json
[2025-11-18 23:38:00] -rw------- 1 boinc boinc   1525063 Nov 18 23:37 agis_ddmendpoints.agis.ALL.json
[2025-11-18 23:38:00] -rw------- 1 boinc boinc   1257822 Nov 18 23:37 log.47493068._000925.job.log.tgz.1
[2025-11-18 23:38:00] -rw------- 1 boinc boinc      8577 Nov 18 23:37 heartbeat.json
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc      8192 Nov 18 23:37 boinc_mmap_file
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc        28 Nov 18 23:37 wrapper_checkpoint.txt
[2025-11-18 23:38:00] -rw------- 1 boinc boinc       816 Nov 18 23:38 pilotlog.txt
[2025-11-18 23:38:00] -rw------- 1 boinc boinc        95 Nov 18 23:38 pilot_heartbeat.json
[2025-11-18 23:38:00] -rw------- 1 boinc boinc   3514987 Nov 18 23:38 log.47493068._000925.job.log.1
[2025-11-18 23:38:00] -rw------- 1 boinc boinc       353 Nov 18 23:38 output.list
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc       620 Nov 18 23:38 runtime_log
[2025-11-18 23:38:00] -rw------- 1 boinc boinc   4792320 Nov 18 23:38 result.tar.gz
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc      8778 Nov 18 23:38 runtime_log.err
[2025-11-18 23:38:00] -rw------- 1 boinc boinc       665 Nov 18 23:38 2RANDmYncf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZDFKDmdjtwMo.diag
[2025-11-18 23:38:00] -rw-r--r-- 1 boinc boinc     10054 Nov 18 23:38 stderr.txt
[2025-11-18 23:38:00] HITS file was successfully produced:
[2025-11-18 23:38:00] -rw------- 1 boinc boinc 905436332 Nov 18 23:37 shared/HITS.pool.root.1
[2025-11-18 23:38:00]  *** Contents of shared directory: ***
[2025-11-18 23:38:00] total 1289464
[2025-11-18 23:38:00] -rw-r--r-- 2 boinc boinc 409559866 Nov 18 16:41 ATLAS.root_0
[2025-11-18 23:38:00] -rw-r--r-- 2 boinc boinc    590101 Nov 18 16:41 input.tar.gz
[2025-11-18 23:38:00] -rw-r--r-- 2 boinc boinc     15120 Nov 18 16:41 start_atlas.sh
[2025-11-18 23:38:00] -rw------- 1 boinc boinc 905436332 Nov 18 23:37 HITS.pool.root.1
[2025-11-18 23:38:00] -rw------- 1 boinc boinc   4792320 Nov 18 23:38 result.tar.gz
23:38:23 (844001): run_atlas exited; CPU time 97725.218069
23:38:23 (844001): called boinc_finish(0)

</stderr_txt>
]]>

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