Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:02:08 (4826): wrapper (7.7.26015): starting
20:02:08 (4826): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:02:08] Arguments: --nthreads 8
[2025-11-20 20:02:08] Threads: 8
[2025-11-20 20:02:08] Checking for CVMFS
[2025-11-20 20:02:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:02:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:02:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:02:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:02:10] 2.11.2.0 17186 277128 141812 153088 2 294 15875670 25165824 4620 130560 6 138132624 99.886 74583997 3038 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 20:02:10] CVMFS is ok
[2025-11-20 20:02:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:02:10] Checking for apptainer binary...
[2025-11-20 20:02:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:02:10] Running /usr/bin/apptainer --version
[2025-11-20 20:02:10] apptainer version 1.3.2-1.el7
[2025-11-20 20:02:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:02:17] cg-vwn311.simple-grid.lan
[2025-11-20 20:02:17] apptainer works
[2025-11-20 20:02:17] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:02:17] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:02:17] Starting ATLAS job with PandaID=6891562531
[2025-11-20 20:02:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:04:32]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:04:32] 2025-11-21 20:03:50,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:04:32] 2025-11-21 20:03:50,861 | INFO     | time since job start (89888s) is within the limit (172800.0s)
[2025-11-21 21:04:32] 2025-11-21 20:03:52,867 | INFO     | time since job start (89890s) is within the limit (172800.0s)
[2025-11-21 21:04:32] 2025-11-21 20:03:53,098 | INFO     | monitor loop #6048: job 0:6891562531 is in state 'finished'
[2025-11-21 21:04:32] 2025-11-21 20:03:53,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:04:32] 2025-11-21 20:03:54,012 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 21:04:32] 2025-11-21 20:03:54,013 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 21:04:32] 2025-11-21 20:03:54,015 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6891562531/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:04:32] 2025-11-21 20:03:54,016 | INFO     | extracted standard info from prmon json
[2025-11-21 21:04:32] 2025-11-21 20:03:54,016 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:04:32] 2025-11-21 20:03:54,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:04:32] 2025-11-21 20:03:54,044 | INFO     | fitting pss+swap vs Time
[2025-11-21 21:04:32] 2025-11-21 20:03:54,047 | INFO     | sum of square deviations: 972974654236.6942
[2025-11-21 21:04:32] 2025-11-21 20:03:54,111 | INFO     | sum of deviations: 2983811504755.7812
[2025-11-21 21:04:32] 2025-11-21 20:03:54,112 | INFO     | mean x: 1763710663.636612
[2025-11-21 21:04:32] 2025-11-21 20:03:54,112 | INFO     | mean y: 2868061.8586065574
[2025-11-21 21:04:32] 2025-11-21 20:03:54,112 | INFO     | intersect: -5405885543.699505
[2025-11-21 21:04:32] 2025-11-21 20:03:54,114 | INFO     | chi2: 16.793318620188078
[2025-11-21 21:04:32] 2025-11-21 20:03:54,116 | INFO     | sum of square deviations: 963040166170.1959
[2025-11-21 21:04:32] 2025-11-21 20:03:54,183 | INFO     | sum of deviations: 3472555705997.5117
[2025-11-21 21:04:32] 2025-11-21 20:03:54,184 | INFO     | mean x: 1763710511.1405072
[2025-11-21 21:04:32] 2025-11-21 20:03:54,184 | INFO     | mean y: 2875563.3975325567
[2025-11-21 21:04:32] 2025-11-21 20:03:54,184 | INFO     | intersect: -6356758452.227079
[2025-11-21 21:04:32] 2025-11-21 20:03:54,186 | INFO     | chi2: 13.688298979658516
[2025-11-21 21:04:32] 2025-11-21 20:03:54,186 | INFO     | current chi2=13.688298979658516 (change=18.489613105993623 %)
[2025-11-21 21:04:32] 2025-11-21 20:03:54,186 | INFO     | right removable region: 1458
[2025-11-21 21:04:32] 2025-11-21 20:03:54,188 | INFO     | sum of square deviations: 963039151130.1962
[2025-11-21 21:04:32] 2025-11-21 20:03:54,248 | INFO     | sum of deviations: 2393048298583.908
[2025-11-21 21:04:32] 2025-11-21 20:03:54,249 | INFO     | mean x: 1763710816.1405072
[2025-11-21 21:04:32] 2025-11-21 20:03:54,249 | INFO     | mean y: 2877128.5565455793
[2025-11-21 21:04:32] 2025-11-21 20:03:54,249 | INFO     | intersect: -4379753798.5515
[2025-11-21 21:04:32] 2025-11-21 20:03:54,251 | INFO     | chi2: 12.498108109222875
[2025-11-21 21:04:32] 2025-11-21 20:03:54,251 | INFO     | current chi2=12.498108109222875 (change=25.576901195703623 %)
[2025-11-21 21:04:32] 2025-11-21 20:03:54,253 | INFO     | sum of square deviations: 953171509761.17
[2025-11-21 21:04:32] 2025-11-21 20:03:54,316 | INFO     | sum of deviations: 1888261833043.9202
[2025-11-21 21:04:32] 2025-11-21 20:03:54,316 | INFO     | mean x: 1763710968.6444292
[2025-11-21 21:04:32] 2025-11-21 20:03:54,316 | INFO     | mean y: 2884930.44085282
[2025-11-21 21:04:32] 2025-11-21 20:03:54,316 | INFO     | intersect: -3491080292.509067
[2025-11-21 21:04:32] 2025-11-21 20:03:54,318 | INFO     | chi2: 9.460260654471561
[2025-11-21 21:04:32] 2025-11-21 20:03:54,318 | INFO     | current chi2=9.460260654471561 (change=24.306458451175974 %)
[2025-11-21 21:04:32] 2025-11-21 20:03:54,319 | INFO     | left removable region: 20
[2025-11-21 21:04:32] 2025-11-21 20:03:54,321 | INFO     | sum of square deviations: 922050390972.754
[2025-11-21 21:04:32] 2025-11-21 20:03:54,386 | INFO     | sum of deviations: 2109388540335.8384
[2025-11-21 21:04:32] 2025-11-21 20:03:54,387 | INFO     | mean x: 1763711090.650904
[2025-11-21 21:04:32] 2025-11-21 20:03:54,387 | INFO     | mean y: 2900063.5076495134
[2025-11-21 21:04:32] 2025-11-21 20:03:54,387 | INFO     | intersect: -4031968311.9152
[2025-11-21 21:04:32] 2025-11-21 20:03:54,389 | INFO     | chi2: 4.472257296082473
[2025-11-21 21:04:32] 2025-11-21 20:03:54,389 | INFO     | current memory leak: 2.29 B/s (using 1438 data points, chi2=4.47)
[2025-11-21 21:04:32] 2025-11-21 20:03:54,392 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-21 21:04:32] 2025-11-21 20:03:54,392 | INFO     | ..............................
[2025-11-21 21:04:32] 2025-11-21 20:03:54,392 | INFO     | . Timing measurements:
[2025-11-21 21:04:32] 2025-11-21 20:03:54,392 | INFO     | . get job = 0 s
[2025-11-21 21:04:32] 2025-11-21 20:03:54,392 | INFO     | . initial setup = 9 s
[2025-11-21 21:04:32] 2025-11-21 20:03:54,392 | INFO     | . payload setup = 162 s
[2025-11-21 21:04:32] 2025-11-21 20:03:54,392 | INFO     | . stage-in = 0 s
[2025-11-21 21:04:32] 2025-11-21 20:03:54,392 | INFO     | . payload execution = 89442 s
[2025-11-21 21:04:32] 2025-11-21 20:03:54,393 | INFO     | . stage-out = 6 s
[2025-11-21 21:04:32] 2025-11-21 20:03:54,393 | INFO     | . log creation = 2 s
[2025-11-21 21:04:32] 2025-11-21 20:03:54,393 | INFO     | ..............................
[2025-11-21 21:04:32] 2025-11-21 20:03:54,592 | INFO     | 
[2025-11-21 21:04:32] 2025-11-21 20:03:54,592 | INFO     | job summary report
[2025-11-21 21:04:32] 2025-11-21 20:03:54,592 | INFO     | --------------------------------------------------
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | PanDA job id: 6891562531
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | task id: 47493068
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | errors: (none)
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | pilot state: finished 
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | transexitcode: 0
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | exeerrorcode: 0
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | exeerrordiag: 
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | exitcode: 0
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | exitmsg: OK
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | cpuconsumptiontime: 326483 s
[2025-11-21 21:04:32] 2025-11-21 20:03:54,593 | INFO     | nevents: 1000
[2025-11-21 21:04:32] 2025-11-21 20:03:54,594 | INFO     | neventsw: 0
[2025-11-21 21:04:32] 2025-11-21 20:03:54,594 | INFO     | pid: 15185
[2025-11-21 21:04:32] 2025-11-21 20:03:54,594 | INFO     | pgrp: 15185
[2025-11-21 21:04:32] 2025-11-21 20:03:54,594 | INFO     | corecount: 8
[2025-11-21 21:04:32] 2025-11-21 20:03:54,594 | INFO     | event service: False
[2025-11-21 21:04:32] 2025-11-21 20:03:54,594 | INFO     | sizes: {0: 2298626, 1: 2298825, 12: 2298825, 23: 2298853, 34: 2298881, 44: 2298909, 55: 2299065, 66: 2299093, 77: 2299121, 87: 2299177, 97: 2299467, 98: 2299775, 8
[2025-11-21 21:04:32] 2025-11-21 20:03:54,594 | INFO     | --------------------------------------------------
[2025-11-21 21:04:32] 2025-11-21 20:03:54,594 | INFO     | 
[2025-11-21 21:04:32] 2025-11-21 20:03:54,594 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-21 21:04:32] 2025-11-21 20:03:54,875 | INFO     | time since job start (89892s) is within the limit (172800.0s)
[2025-11-21 21:04:32] 2025-11-21 20:03:54,876 | INFO     | 89902s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 21:04:32] 2025-11-21 20:03:55,122 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,122 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,124 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,124 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,124 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,124 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,124 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,124 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:04:32] 2025-11-21 20:03:55,124 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,124 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:04:32] 2025-11-21 20:03:55,125 | INFO     | job 6891562531 has completed (purged errors)
[2025-11-21 21:04:32] 2025-11-21 20:03:55,125 | INFO     | overall cleanup function is called
[2025-11-21 21:04:32] 2025-11-21 20:03:56,068 | INFO     | PID=8631 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 21:04:32] 2025-11-21 20:03:56,068 | INFO     | .. there are 9 such processes running
[2025-11-21 21:04:32] 2025-11-21 20:03:56,145 | INFO     | --- collectZombieJob: --- 10, [15185]
[2025-11-21 21:04:32] 2025-11-21 20:03:56,145 | INFO     | zombie collector waiting for pid 15185
[2025-11-21 21:04:32] 2025-11-21 20:03:56,146 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:04:32] 2025-11-21 20:03:56,146 | INFO     | collected zombie processes
[2025-11-21 21:04:32] 2025-11-21 20:03:56,146 | INFO     | will attempt to kill all subprocesses of pid=15185
[2025-11-21 21:04:32] 2025-11-21 20:03:56,289 | INFO     | process IDs to be killed: [15185] (in reverse order)
[2025-11-21 21:04:32] 2025-11-21 20:03:56,749 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:04:32] 2025-11-21 20:03:56,749 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:04:32] 2025-11-21 20:03:56,753 | INFO     | did not find any defunct processes belonging to 15185
[2025-11-21 21:04:32] 2025-11-21 20:03:56,756 | INFO     | did not find any defunct processes belonging to 15185
[2025-11-21 21:04:32] 2025-11-21 20:03:56,789 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:04:32] 2025-11-21 20:03:56,790 | INFO     | ready for new job
[2025-11-21 21:04:32] 2025-11-21 20:03:56,790 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:04:32] 2025-11-21 20:03:56,797 | INFO     | ***************************************
[2025-11-21 21:04:32] 2025-11-21 20:03:56,797 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:04:32] 2025-11-21 20:03:56,797 | INFO     | ***************************************
[2025-11-21 21:04:32] 2025-11-21 20:03:56,797 | INFO     | 
[2025-11-21 21:04:32] 2025-11-21 20:03:56,798 | INFO     | pilot is running in a VM
[2025-11-21 21:04:32] 2025-11-21 20:03:56,798 | INFO     | architecture information:
[2025-11-21 21:04:32] 2025-11-21 20:03:56,808 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:04:32] 2025-11-21 20:03:56,927 | INFO     | cat /etc/os-release:
[2025-11-21 21:04:32] NAME="CentOS Linux"
[2025-11-21 21:04:32] VERSION="7 (Core)"
[2025-11-21 21:04:32] ID="centos"
[2025-11-21 21:04:32] ID_LIKE="rhel fedora"
[2025-11-21 21:04:32] VERSION_ID="7"
[2025-11-21 21:04:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:04:32] ANSI_COLOR="0;31"
[2025-11-21 21:04:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:04:32] HOME_URL="https://www.centos.org/"
[2025-11-21 21:04:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:04:32] 
[2025-11-21 21:04:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:04:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:04:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:04:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:04:32] 
[2025-11-21 21:04:32] 2025-11-21 20:03:56,928 | INFO     | ***************************************
[2025-11-21 21:04:32] 2025-11-21 20:03:57,435 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-21 21:04:32] 2025-11-21 20:03:57,581 | INFO     | sufficient remaining disk space (495176384512 B)
[2025-11-21 21:04:32] 2025-11-21 20:03:57,581 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:04:32] 2025-11-21 20:03:57,581 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:04:32] 2025-11-21 20:03:57,581 | INFO     | update_server=False
[2025-11-21 21:04:32] 2025-11-21 20:03:57,581 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:04:32] 2025-11-21 20:03:57,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:04:32] 2025-11-21 20:03:57,583 | INFO     | aborting loop
[2025-11-21 21:04:32] 2025-11-21 20:03:57,618 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:04:32] 2025-11-21 20:03:57,935 | INFO     | all data control threads have been joined
[2025-11-21 21:04:32] 2025-11-21 20:03:58,237 | INFO     | all payload control threads have been joined
[2025-11-21 21:04:32] 2025-11-21 20:03:58,465 | INFO     | all job control threads have been joined
[2025-11-21 21:04:32] 2025-11-21 20:03:58,587 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:58,589 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:58,813 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:58,941 | INFO     | [data] control thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:58,952 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:58,953 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:59,242 | INFO     | [payload] control thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:59,428 | INFO     | [job] validate thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:59,471 | INFO     | [job] control thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:59,528 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:59,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:04:32] 2025-11-21 20:03:59,625 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:59,680 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:03:59,827 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:04:00,045 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:04:00,548 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:04:01,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:04:32] 2025-11-21 20:04:05,010 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:04:32] 2025-11-21 20:04:18,786 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:04:32] 2025-11-21 20:04:20,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140635269969728)>', '<ExcThread(monitor, started 140634518177536)>']
[2025-11-21 21:04:32] 2025-11-21 20:04:25,474 | INFO     | all workflow threads have been joined
[2025-11-21 21:04:32] 2025-11-21 20:04:25,474 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:04:32] 2025-11-21 20:04:25,475 | INFO     | traces error code: 0
[2025-11-21 21:04:32] 2025-11-21 20:04:25,475 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:04:32] 2025-11-21 20:04:28,216 | INFO     | PID=8631 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 21:04:32] 2025-11-21 20:04:28,216 | INFO     | .. there are 9 such processes running
[2025-11-21 21:04:32] 2025-11-21 20:04:28,217 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:04:32] 2025-11-21 20:04:28,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:04:32] 2025-11-21 20:04:28,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:04:32] 2025-11-21 20:04:28,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:04:32] 2025-11-21 20:04:28,218 | INFO     | [monitor] control thread has ended
[2025-11-21 21:04:32] 2025-11-21 20:04:28,590 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:04:32] 2025-11-21 20:04:28,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:04:32] 2025-11-21 20:04:28,740 [wrapper] pilotpid: 8631
[2025-11-21 21:04:32] 2025-11-21 20:04:28,784 [wrapper] Pilot exit status: 0
[2025-11-21 21:04:32] 2025-11-21 20:04:29,274 [wrapper] pandaids: 6891562531
[2025-11-21 21:04:32] 2025-11-21 20:04:30,291 [wrapper] cleanup supervisor_pilot 22072 8632
[2025-11-21 21:04:32] 2025-11-21 20:04:30,406 [wrapper] Test setup, not cleaning
[2025-11-21 21:04:32] 2025-11-21 20:04:30,523 [wrapper] apfmon messages muted
[2025-11-21 21:04:32] 2025-11-21 20:04:30,622 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:04:32] 2025-11-21 20:04:30,715 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:04:32]  *** Error codes and diagnostics ***
[2025-11-21 21:04:32]     "exeErrorCode": 0,
[2025-11-21 21:04:32]     "exeErrorDiag": "",
[2025-11-21 21:04:32]     "pilotErrorCode": 0,
[2025-11-21 21:04:32]     "pilotErrorDiag": "",
[2025-11-21 21:04:32]  *** Listing of results directory ***
[2025-11-21 21:04:32] total 1320492
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-21 21:04:32] -rwx------. 1 boinc boinc     36292 Nov 18 16:27 runpilot2-wrapper.sh
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc       100 Nov 20 20:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:04:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 20:02 run_atlas
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc       105 Nov 20 20:02 job.xml
[2025-11-21 21:04:32] -rw-r--r--. 2 boinc boinc 412037958 Nov 20 20:02 EVNT.47493065._000108.pool.root.1
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc      6389 Nov 20 20:02 init_data.xml
[2025-11-21 21:04:32] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:02 start_atlas.sh
[2025-11-21 21:04:32] drwxrwx--x. 2 boinc boinc        68 Nov 20 20:02 shared
[2025-11-21 21:04:32] -rw-r--r--. 2 boinc boinc    590103 Nov 20 20:02 input.tar.gz
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc         0 Nov 20 20:02 boinc_lockfile
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc      2773 Nov 20 20:02 pandaJob.out
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc    989440 Nov 20 20:05 agis_schedconf.cvmfs.json
[2025-11-21 21:04:32] drwx------. 5 boinc boinc      4096 Nov 20 20:05 pilot3
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc       533 Nov 21 20:40 boinc_task_state.xml
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc 907161032 Nov 21 21:01 HITS.47493068._001076.pool.root.1
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc      1031 Nov 21 21:02 memory_monitor_summary.json
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc   1526164 Nov 21 21:02 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc   2545249 Nov 21 21:02 log.47493068._001076.job.log.tgz.1
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc      8628 Nov 21 21:03 heartbeat.json
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc      8192 Nov 21 21:04 boinc_mmap_file
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc        29 Nov 21 21:04 wrapper_checkpoint.txt
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc       819 Nov 21 21:04 pilotlog.txt
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc        95 Nov 21 21:04 pilot_heartbeat.json
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc  11991829 Nov 21 21:04 log.47493068._001076.job.log.1
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc       353 Nov 21 21:04 output.list
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc       620 Nov 21 21:04 runtime_log
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc  14561280 Nov 21 21:04 result.tar.gz
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc      8717 Nov 21 21:04 runtime_log.err
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc       662 Nov 21 21:04 LIYMDmXncf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNDFKDmYaJEtn.diag
[2025-11-21 21:04:32] -rw-r--r--. 1 boinc boinc     21302 Nov 21 21:04 stderr.txt
[2025-11-21 21:04:32] HITS file was successfully produced:
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc 907161032 Nov 21 21:01 shared/HITS.pool.root.1
[2025-11-21 21:04:32]  *** Contents of shared directory: ***
[2025-11-21 21:04:32] total 1303100
[2025-11-21 21:04:32] -rw-r--r--. 2 boinc boinc 412037958 Nov 20 20:02 ATLAS.root_0
[2025-11-21 21:04:32] -rw-r--r--. 2 boinc boinc     15120 Nov 20 20:02 start_atlas.sh
[2025-11-21 21:04:32] -rw-r--r--. 2 boinc boinc    590103 Nov 20 20:02 input.tar.gz
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc 907161032 Nov 21 21:01 HITS.pool.root.1
[2025-11-21 21:04:32] -rw-------. 1 boinc boinc  14561280 Nov 21 21:04 result.tar.gz
21:04:33 (4826): run_atlas exited; CPU time 327174.730344
21:04:33 (4826): called boinc_finish(0)

</stderr_txt>
]]>

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