Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:58:26 (8721): wrapper (7.7.26015): starting
18:58:26 (8721): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:58:26] Arguments: --nthreads 8
[2025-11-19 18:58:26] Threads: 8
[2025-11-19 18:58:26] Checking for CVMFS
[2025-11-19 18:58:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:58:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:58:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:58:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:58:28] 2.11.2.0 17186 275624 140916 153052 2 221 15128893 25165824 4632 130560 6 137478416 99.886 74352131 3054 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:58:28] CVMFS is ok
[2025-11-19 18:58:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:58:28] Checking for apptainer binary...
[2025-11-19 18:58:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:58:28] Running /usr/bin/apptainer --version
[2025-11-19 18:58:28] apptainer version 1.3.2-1.el7
[2025-11-19 18:58:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:59:03] cg-vwn311.simple-grid.lan
[2025-11-19 18:59:03] apptainer works
[2025-11-19 18:59:03] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:59:03] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:59:04] Starting ATLAS job with PandaID=6891562528
[2025-11-19 18:59:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:01:59]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:01:59] 2025-11-20 19:01:25,367 | INFO     | sum of deviations: 5164734591258.624
[2025-11-20 20:01:59] 2025-11-20 19:01:25,367 | INFO     | mean x: 1763620547.8114755
[2025-11-20 20:01:59] 2025-11-20 19:01:25,367 | INFO     | mean y: 2849180.831967213
[2025-11-20 20:01:59] 2025-11-20 19:01:25,367 | INFO     | intersect: -9358788381.908607
[2025-11-20 20:01:59] 2025-11-20 19:01:25,370 | INFO     | chi2: 17.798741401152945
[2025-11-20 20:01:59] 2025-11-20 19:01:25,372 | INFO     | sum of square deviations: 963039814669.3381
[2025-11-20 20:01:59] 2025-11-20 19:01:25,450 | INFO     | sum of deviations: 5657958080054.5625
[2025-11-20 20:01:59] 2025-11-20 19:01:25,451 | INFO     | mean x: 1763620395.31597
[2025-11-20 20:01:59] 2025-11-20 19:01:25,451 | INFO     | mean y: 2856751.6668951334
[2025-11-20 20:01:59] 2025-11-20 19:01:25,451 | INFO     | intersect: -10358594679.344969
[2025-11-20 20:01:59] 2025-11-20 19:01:25,453 | INFO     | chi2: 14.659951997664576
[2025-11-20 20:01:59] 2025-11-20 19:01:25,453 | INFO     | current chi2=14.659951997664576 (change=17.634895258858293 %)
[2025-11-20 20:01:59] 2025-11-20 19:01:25,453 | INFO     | right removable region: 1458
[2025-11-20 20:01:59] 2025-11-20 19:01:25,455 | INFO     | sum of square deviations: 963038643469.3379
[2025-11-20 20:01:59] 2025-11-20 19:01:25,544 | INFO     | sum of deviations: 4537454086679.077
[2025-11-20 20:01:59] 2025-11-20 19:01:25,545 | INFO     | mean x: 1763620700.31597
[2025-11-20 20:01:59] 2025-11-20 19:01:25,545 | INFO     | mean y: 2858808.897875257
[2025-11-20 20:01:59] 2025-11-20 19:01:25,545 | INFO     | intersect: -8306618706.118687
[2025-11-20 20:01:59] 2025-11-20 19:01:25,547 | INFO     | chi2: 12.762120048098549
[2025-11-20 20:01:59] 2025-11-20 19:01:25,547 | INFO     | current chi2=12.762120048098549 (change=28.297626441879427 %)
[2025-11-20 20:01:59] 2025-11-20 19:01:25,549 | INFO     | sum of square deviations: 953170924018.1493
[2025-11-20 20:01:59] 2025-11-20 19:01:25,636 | INFO     | sum of deviations: 3971187656901.3853
[2025-11-20 20:01:59] 2025-11-20 19:01:25,641 | INFO     | mean x: 1763620852.8204951
[2025-11-20 20:01:59] 2025-11-20 19:01:25,641 | INFO     | mean y: 2867560.074277854
[2025-11-20 20:01:59] 2025-11-20 19:01:25,641 | INFO     | intersect: -7344890523.701774
[2025-11-20 20:01:59] 2025-11-20 19:01:25,643 | INFO     | chi2: 8.79382802758564
[2025-11-20 20:01:59] 2025-11-20 19:01:25,644 | INFO     | current chi2=8.79382802758564 (change=31.094300990407557 %)
[2025-11-20 20:01:59] 2025-11-20 19:01:25,646 | INFO     | sum of square deviations: 943370833741.901
[2025-11-20 20:01:59] 2025-11-20 19:01:25,707 | INFO     | sum of deviations: 3450009319883.375
[2025-11-20 20:01:59] 2025-11-20 19:01:25,708 | INFO     | mean x: 1763621005.3250518
[2025-11-20 20:01:59] 2025-11-20 19:01:25,708 | INFO     | mean y: 2875670.253968254
[2025-11-20 20:01:59] 2025-11-20 19:01:25,708 | INFO     | intersect: -6446877372.225815
[2025-11-20 20:01:59] 2025-11-20 19:01:25,710 | INFO     | chi2: 5.520283732163733
[2025-11-20 20:01:59] 2025-11-20 19:01:25,710 | INFO     | current chi2=5.520283732163733 (change=37.225475471580985 %)
[2025-11-20 20:01:59] 2025-11-20 19:01:25,713 | INFO     | sum of square deviations: 933638404760.0618
[2025-11-20 20:01:59] 2025-11-20 19:01:25,787 | INFO     | sum of deviations: 3188771765800.436
[2025-11-20 20:01:59] 2025-11-20 19:01:25,787 | INFO     | mean x: 1763621157.8275623
[2025-11-20 20:01:59] 2025-11-20 19:01:25,787 | INFO     | mean y: 2879759.833102493
[2025-11-20 20:01:59] 2025-11-20 19:01:25,787 | INFO     | intersect: -6020635687.878239
[2025-11-20 20:01:59] 2025-11-20 19:01:25,789 | INFO     | chi2: 4.588725511988871
[2025-11-20 20:01:59] 2025-11-20 19:01:25,789 | INFO     | current chi2=4.588725511988871 (change=16.875187315955735 %)
[2025-11-20 20:01:59] 2025-11-20 19:01:25,790 | INFO     | left removable region: 40
[2025-11-20 20:01:59] 2025-11-20 19:01:25,792 | INFO     | sum of square deviations: 884110574538.627
[2025-11-20 20:01:59] 2025-11-20 19:01:25,846 | INFO     | sum of deviations: 3507423320588.215
[2025-11-20 20:01:59] 2025-11-20 19:01:25,846 | INFO     | mean x: 1763621584.8251057
[2025-11-20 20:01:59] 2025-11-20 19:01:25,846 | INFO     | mean y: 2893617.404090268
[2025-11-20 20:01:59] 2025-11-20 19:01:25,846 | INFO     | intersect: -6993705737.304867
[2025-11-20 20:01:59] 2025-11-20 19:01:25,848 | INFO     | chi2: 0.6050776493648828
[2025-11-20 20:01:59] 2025-11-20 19:01:25,848 | INFO     | current memory leak: 3.97 B/s (using 1418 data points, chi2=0.61)
[2025-11-20 20:01:59] 2025-11-20 19:01:25,850 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | ..............................
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | . Timing measurements:
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | . get job = 0 s
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | . initial setup = 12 s
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | . payload setup = 175 s
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | . stage-in = 0 s
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | . payload execution = 89431 s
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | . stage-out = 4 s
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | . log creation = 1 s
[2025-11-20 20:01:59] 2025-11-20 19:01:25,851 | INFO     | ..............................
[2025-11-20 20:01:59] 2025-11-20 19:01:25,977 | INFO     | 
[2025-11-20 20:01:59] 2025-11-20 19:01:25,978 | INFO     | job summary report
[2025-11-20 20:01:59] 2025-11-20 19:01:25,978 | INFO     | --------------------------------------------------
[2025-11-20 20:01:59] 2025-11-20 19:01:25,978 | INFO     | PanDA job id: 6891562528
[2025-11-20 20:01:59] 2025-11-20 19:01:25,978 | INFO     | task id: 47493068
[2025-11-20 20:01:59] 2025-11-20 19:01:25,978 | INFO     | errors: (none)
[2025-11-20 20:01:59] 2025-11-20 19:01:25,978 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:01:59] 2025-11-20 19:01:25,978 | INFO     | pilot state: finished 
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | transexitcode: 0
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | exeerrorcode: 0
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | exeerrordiag: 
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | exitcode: 0
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | exitmsg: OK
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | cpuconsumptiontime: 331927 s
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | nevents: 1000
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | neventsw: 0
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | pid: 19145
[2025-11-20 20:01:59] 2025-11-20 19:01:25,979 | INFO     | pgrp: 19145
[2025-11-20 20:01:59] 2025-11-20 19:01:25,980 | INFO     | corecount: 8
[2025-11-20 20:01:59] 2025-11-20 19:01:25,980 | INFO     | event service: False
[2025-11-20 20:01:59] 2025-11-20 19:01:25,980 | INFO     | sizes: {0: 2296372, 1: 2296974, 2: 2297257, 3: 2297285, 14: 2297285, 24: 2297313, 35: 2297469, 46: 2297497, 57: 2297525, 67: 2297553, 78: 2297581, 89: 2297917, 97:
[2025-11-20 20:01:59] 2025-11-20 19:01:25,980 | INFO     | --------------------------------------------------
[2025-11-20 20:01:59] 2025-11-20 19:01:25,980 | INFO     | 
[2025-11-20 20:01:59] 2025-11-20 19:01:25,980 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-20 20:01:59] 2025-11-20 19:01:26,011 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:01:59] 2025-11-20 19:01:26,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:01:59] 2025-11-20 19:01:26,014 | INFO     | job 6891562528 has completed (purged errors)
[2025-11-20 20:01:59] 2025-11-20 19:01:26,014 | INFO     | overall cleanup function is called
[2025-11-20 20:01:59] 2025-11-20 19:01:27,033 | INFO     | --- collectZombieJob: --- 10, [19145]
[2025-11-20 20:01:59] 2025-11-20 19:01:27,033 | INFO     | zombie collector waiting for pid 19145
[2025-11-20 20:01:59] 2025-11-20 19:01:27,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:01:59] 2025-11-20 19:01:27,034 | INFO     | collected zombie processes
[2025-11-20 20:01:59] 2025-11-20 19:01:27,034 | INFO     | will attempt to kill all subprocesses of pid=19145
[2025-11-20 20:01:59] 2025-11-20 19:01:27,129 | INFO     | process IDs to be killed: [19145] (in reverse order)
[2025-11-20 20:01:59] 2025-11-20 19:01:27,750 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:01:59] 2025-11-20 19:01:27,750 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:01:59] 2025-11-20 19:01:27,754 | INFO     | did not find any defunct processes belonging to 19145
[2025-11-20 20:01:59] 2025-11-20 19:01:27,757 | INFO     | did not find any defunct processes belonging to 19145
[2025-11-20 20:01:59] 2025-11-20 19:01:27,815 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:01:59] 2025-11-20 19:01:27,816 | INFO     | ready for new job
[2025-11-20 20:01:59] 2025-11-20 19:01:27,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:01:59] 2025-11-20 19:01:27,823 | INFO     | ***************************************
[2025-11-20 20:01:59] 2025-11-20 19:01:27,824 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:01:59] 2025-11-20 19:01:27,824 | INFO     | ***************************************
[2025-11-20 20:01:59] 2025-11-20 19:01:27,824 | INFO     | 
[2025-11-20 20:01:59] 2025-11-20 19:01:27,825 | INFO     | pilot is running in a VM
[2025-11-20 20:01:59] 2025-11-20 19:01:27,825 | INFO     | architecture information:
[2025-11-20 20:01:59] 2025-11-20 19:01:27,839 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:01:59] 2025-11-20 19:01:28,053 | INFO     | cat /etc/os-release:
[2025-11-20 20:01:59] NAME="CentOS Linux"
[2025-11-20 20:01:59] VERSION="7 (Core)"
[2025-11-20 20:01:59] ID="centos"
[2025-11-20 20:01:59] ID_LIKE="rhel fedora"
[2025-11-20 20:01:59] VERSION_ID="7"
[2025-11-20 20:01:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:01:59] ANSI_COLOR="0;31"
[2025-11-20 20:01:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:01:59] HOME_URL="https://www.centos.org/"
[2025-11-20 20:01:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:01:59] 
[2025-11-20 20:01:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:01:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:01:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:01:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:01:59] 
[2025-11-20 20:01:59] 2025-11-20 19:01:28,054 | INFO     | ***************************************
[2025-11-20 20:01:59] 2025-11-20 19:01:28,557 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-20 20:01:59] 2025-11-20 19:01:28,792 | INFO     | sufficient remaining disk space (495008612352 B)
[2025-11-20 20:01:59] 2025-11-20 19:01:28,792 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:01:59] 2025-11-20 19:01:28,792 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:01:59] 2025-11-20 19:01:28,793 | INFO     | update_server=False
[2025-11-20 20:01:59] 2025-11-20 19:01:28,793 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:01:59] 2025-11-20 19:01:29,245 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 20:01:59] 2025-11-20 19:01:29,245 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 20:01:59] 2025-11-20 19:01:29,245 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:01:59] 2025-11-20 19:01:29,246 | INFO     | will abort loop
[2025-11-20 20:01:59] 2025-11-20 19:01:29,311 | INFO     | all data control threads have been joined
[2025-11-20 20:01:59] 2025-11-20 19:01:29,751 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:01:59] 2025-11-20 19:01:29,764 | INFO     | all job control threads have been joined
[2025-11-20 20:01:59] 2025-11-20 19:01:29,798 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:29,800 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:29,808 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:29,852 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:29,913 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:30,036 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:30,227 | INFO     | all payload control threads have been joined
[2025-11-20 20:01:59] 2025-11-20 19:01:30,251 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:30,317 | INFO     | [data] control thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:30,680 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:01:59] 2025-11-20 19:01:30,770 | INFO     | [job] control thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:30,951 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:30,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:01:59] 2025-11-20 19:01:31,233 | INFO     | [payload] control thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:31,292 | INFO     | [job] validate thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:31,757 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:31,999 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:34,689 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:39,203 | INFO     | job.realtimelogging is not enabled
[2025-11-20 20:01:59] 2025-11-20 19:01:40,209 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:01:59] 2025-11-20 19:01:51,165 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:01:59] 2025-11-20 19:01:51,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140418015827776)>', '<ExcThread(monitor, started 140417437787904)>']
[2025-11-20 20:01:59] 2025-11-20 19:01:56,202 | INFO     | all workflow threads have been joined
[2025-11-20 20:01:59] 2025-11-20 19:01:56,202 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:01:59] 2025-11-20 19:01:56,203 | INFO     | traces error code: 0
[2025-11-20 20:01:59] 2025-11-20 19:01:56,203 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:01:59] 2025-11-20 19:01:57,456 | INFO     | PID=12521 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:01:59] 2025-11-20 19:01:57,456 | INFO     | .. there are 9 such processes running
[2025-11-20 20:01:59] 2025-11-20 19:01:57,462 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:01:59] 2025-11-20 19:01:57,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:01:59] 2025-11-20 19:01:57,462 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:01:59] 2025-11-20 19:01:57,462 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:01:59] 2025-11-20 19:01:57,462 | INFO     | [monitor] control thread has ended
[2025-11-20 20:01:59] 2025-11-20 19:01:57,709 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:01:59] 2025-11-20 19:01:57,723 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:01:59] 2025-11-20 19:01:57,746 [wrapper] pilotpid: 12521
[2025-11-20 20:01:59] 2025-11-20 19:01:57,756 [wrapper] Pilot exit status: 0
[2025-11-20 20:01:59] 2025-11-20 19:01:57,943 [wrapper] pandaids: 6891562528
[2025-11-20 20:01:59] 2025-11-20 19:01:58,028 [wrapper] cleanup supervisor_pilot 27156 12522
[2025-11-20 20:01:59] 2025-11-20 19:01:58,111 [wrapper] Test setup, not cleaning
[2025-11-20 20:01:59] 2025-11-20 19:01:58,192 [wrapper] apfmon messages muted
[2025-11-20 20:01:59] 2025-11-20 19:01:58,271 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:01:59] 2025-11-20 19:01:58,333 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:01:59]  *** Error codes and diagnostics ***
[2025-11-20 20:01:59]     "exeErrorCode": 0,
[2025-11-20 20:01:59]     "exeErrorDiag": "",
[2025-11-20 20:01:59]     "pilotErrorCode": 0,
[2025-11-20 20:01:59]     "pilotErrorDiag": "",
[2025-11-20 20:01:59]  *** Listing of results directory ***
[2025-11-20 20:01:59] total 1317708
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-20 20:01:59] -rwx------. 1 boinc boinc     36292 Nov 18 16:27 runpilot2-wrapper.sh
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:01:59] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:58 run_atlas
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:58 job.xml
[2025-11-20 20:01:59] -rw-r--r--. 2 boinc boinc 412037958 Nov 19 18:58 EVNT.47493065._000108.pool.root.1
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc      6388 Nov 19 18:58 init_data.xml
[2025-11-20 20:01:59] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:58 start_atlas.sh
[2025-11-20 20:01:59] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:58 shared
[2025-11-20 20:01:59] -rw-r--r--. 2 boinc boinc    590104 Nov 19 18:58 input.tar.gz
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:58 boinc_lockfile
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc      2773 Nov 19 18:59 pandaJob.out
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc    989434 Nov 19 19:03 agis_schedconf.cvmfs.json
[2025-11-20 20:01:59] drwx------. 5 boinc boinc      4096 Nov 19 19:03 pilot3
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:49 boinc_task_state.xml
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc 904322687 Nov 20 19:59 HITS.47493068._001073.pool.root.1
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc      1031 Nov 20 19:59 memory_monitor_summary.json
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc   1526164 Nov 20 19:59 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc   2551236 Nov 20 20:00 log.47493068._001073.job.log.tgz.1
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc      8643 Nov 20 20:01 heartbeat.json
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:01 boinc_mmap_file
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:01 wrapper_checkpoint.txt
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc        95 Nov 20 20:01 pilot_heartbeat.json
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc       820 Nov 20 20:01 pilotlog.txt
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc  11983274 Nov 20 20:01 log.47493068._001073.job.log.1
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc       353 Nov 20 20:01 output.list
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:01 runtime_log
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc  14551040 Nov 20 20:01 result.tar.gz
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc       662 Nov 20 20:01 SLUMDmXncf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKDFKDm8Q2Yrn.diag
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc      8717 Nov 20 20:01 runtime_log.err
[2025-11-20 20:01:59] -rw-r--r--. 1 boinc boinc     20799 Nov 20 20:01 stderr.txt
[2025-11-20 20:01:59] HITS file was successfully produced:
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc 904322687 Nov 20 19:59 shared/HITS.pool.root.1
[2025-11-20 20:01:59]  *** Contents of shared directory: ***
[2025-11-20 20:01:59] total 1300320
[2025-11-20 20:01:59] -rw-r--r--. 2 boinc boinc 412037958 Nov 19 18:58 ATLAS.root_0
[2025-11-20 20:01:59] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:58 start_atlas.sh
[2025-11-20 20:01:59] -rw-r--r--. 2 boinc boinc    590104 Nov 19 18:58 input.tar.gz
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc 904322687 Nov 20 19:59 HITS.pool.root.1
[2025-11-20 20:01:59] -rw-------. 1 boinc boinc  14551040 Nov 20 20:01 result.tar.gz
20:02:01 (8721): run_atlas exited; CPU time 332426.877234
20:02:01 (8721): called boinc_finish(0)

</stderr_txt>
]]>

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