Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:50:21 (18177): wrapper (7.7.26015): starting
18:50:21 (18177): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:50:21] Arguments: --nthreads 8
[2025-11-19 18:50:21] Threads: 8
[2025-11-19 18:50:21] Checking for CVMFS
[2025-11-19 18:50:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:50:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:50:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:50:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:50:23] 2.11.2.0 24942 73762 88176 153052 0 247 13664972 25165825 4204 130560 6 19233779 99.883 10986689 1892 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:50:23] CVMFS is ok
[2025-11-19 18:50:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:50:23] Checking for apptainer binary...
[2025-11-19 18:50:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:50:23] Running /usr/bin/apptainer --version
[2025-11-19 18:50:23] apptainer version 1.3.2-1.el7
[2025-11-19 18:50:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:50:28] cg-vwn352.simple-grid.lan
[2025-11-19 18:50:28] apptainer works
[2025-11-19 18:50:28] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:50:28] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:50:28] Starting ATLAS job with PandaID=6891559111
[2025-11-19 18:50:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:02:03]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:02:03] 2025-11-20 19:01:20,095 | INFO     | sum of square deviations: 991029220232.8367
[2025-11-20 20:02:03] 2025-11-20 19:01:20,165 | INFO     | sum of deviations: 4518062923349.591
[2025-11-20 20:02:03] 2025-11-20 19:01:20,165 | INFO     | mean x: 1763620274.2376103
[2025-11-20 20:02:03] 2025-11-20 19:01:20,165 | INFO     | mean y: 2853478.82688391
[2025-11-20 20:02:03] 2025-11-20 19:01:20,166 | INFO     | intersect: -8037421428.535094
[2025-11-20 20:02:03] 2025-11-20 19:01:20,167 | INFO     | chi2: 16.57082120783609
[2025-11-20 20:02:03] 2025-11-20 19:01:20,170 | INFO     | sum of square deviations: 980972043475.1514
[2025-11-20 20:02:03] 2025-11-20 19:01:20,238 | INFO     | sum of deviations: 5012849973136.646
[2025-11-20 20:02:03] 2025-11-20 19:01:20,238 | INFO     | mean x: 1763620121.7418256
[2025-11-20 20:02:03] 2025-11-20 19:01:20,238 | INFO     | mean y: 2860979.492506812
[2025-11-20 20:02:03] 2025-11-20 19:01:20,238 | INFO     | intersect: -9009386758.554987
[2025-11-20 20:02:03] 2025-11-20 19:01:20,240 | INFO     | chi2: 13.398664537662267
[2025-11-20 20:02:03] 2025-11-20 19:01:20,240 | INFO     | current chi2=13.398664537662267 (change=19.143026349676372 %)
[2025-11-20 20:02:03] 2025-11-20 19:01:20,240 | INFO     | right removable region: 1467
[2025-11-20 20:02:03] 2025-11-20 19:01:20,242 | INFO     | sum of square deviations: 980970931445.1521
[2025-11-20 20:02:03] 2025-11-20 19:01:20,299 | INFO     | sum of deviations: 3901385961541.8413
[2025-11-20 20:02:03] 2025-11-20 19:01:20,300 | INFO     | mean x: 1763620426.7418256
[2025-11-20 20:02:03] 2025-11-20 19:01:20,300 | INFO     | mean y: 2862828.2159400545
[2025-11-20 20:02:03] 2025-11-20 19:01:20,300 | INFO     | intersect: -7011171689.853461
[2025-11-20 20:02:03] 2025-11-20 19:01:20,302 | INFO     | chi2: 11.854341598848103
[2025-11-20 20:02:03] 2025-11-20 19:01:20,302 | INFO     | current chi2=11.854341598848103 (change=28.46255807019169 %)
[2025-11-20 20:02:03] 2025-11-20 19:01:20,304 | INFO     | sum of square deviations: 970980923007.4149
[2025-11-20 20:02:03] 2025-11-20 19:01:20,366 | INFO     | sum of deviations: 3381739494725.0312
[2025-11-20 20:02:03] 2025-11-20 19:01:20,367 | INFO     | mean x: 1763620579.2460697
[2025-11-20 20:02:03] 2025-11-20 19:01:20,367 | INFO     | mean y: 2870760.005468216
[2025-11-20 20:02:03] 2025-11-20 19:01:20,367 | INFO     | intersect: -6139479954.850673
[2025-11-20 20:02:03] 2025-11-20 19:01:20,369 | INFO     | chi2: 8.629518153541962
[2025-11-20 20:02:03] 2025-11-20 19:01:20,369 | INFO     | current chi2=8.629518153541962 (change=27.20373306619998 %)
[2025-11-20 20:02:03] 2025-11-20 19:01:20,371 | INFO     | sum of square deviations: 961058962357.1257
[2025-11-20 20:02:03] 2025-11-20 19:01:20,427 | INFO     | sum of deviations: 2935648190327.8315
[2025-11-20 20:02:03] 2025-11-20 19:01:20,428 | INFO     | mean x: 1763620731.7503428
[2025-11-20 20:02:03] 2025-11-20 19:01:20,428 | INFO     | mean y: 2877614.3319615913
[2025-11-20 20:02:03] 2025-11-20 19:01:20,428 | INFO     | intersect: -5384273655.647715
[2025-11-20 20:02:03] 2025-11-20 19:01:20,430 | INFO     | chi2: 6.267910025060609
[2025-11-20 20:02:03] 2025-11-20 19:01:20,430 | INFO     | current chi2=6.267910025060609 (change=27.366627967658165 %)
[2025-11-20 20:02:03] 2025-11-20 19:01:20,432 | INFO     | sum of square deviations: 951205261383.31
[2025-11-20 20:02:03] 2025-11-20 19:01:20,454 | INFO     | monitor loop #6107: job 0:6891559111 is in state 'finished'
[2025-11-20 20:02:03] 2025-11-20 19:01:20,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:02:03] 2025-11-20 19:01:20,501 | INFO     | sum of deviations: 2803167562956.289
[2025-11-20 20:02:03] 2025-11-20 19:01:20,502 | INFO     | mean x: 1763620884.2512045
[2025-11-20 20:02:03] 2025-11-20 19:01:20,502 | INFO     | mean y: 2879663.2649690295
[2025-11-20 20:02:03] 2025-11-20 19:01:20,502 | INFO     | intersect: -5194447408.807519
[2025-11-20 20:02:03] 2025-11-20 19:01:20,504 | INFO     | chi2: 6.088859044453454
[2025-11-20 20:02:03] 2025-11-20 19:01:20,504 | INFO     | current chi2=6.088859044453454 (change=2.8566297201342525 %)
[2025-11-20 20:02:03] 2025-11-20 19:01:20,504 | INFO     | left removable region: 40
[2025-11-20 20:02:03] 2025-11-20 19:01:20,506 | INFO     | sum of square deviations: 901051523383.6398
[2025-11-20 20:02:03] 2025-11-20 19:01:20,562 | INFO     | sum of deviations: 3159391543908.792
[2025-11-20 20:02:03] 2025-11-20 19:01:20,562 | INFO     | mean x: 1763621311.2557814
[2025-11-20 20:02:03] 2025-11-20 19:01:20,563 | INFO     | mean y: 2892861.0252277507
[2025-11-20 20:02:03] 2025-11-20 19:01:20,563 | INFO     | intersect: -6180960240.421092
[2025-11-20 20:02:03] 2025-11-20 19:01:20,564 | INFO     | chi2: 2.090368735529325
[2025-11-20 20:02:03] 2025-11-20 19:01:20,565 | INFO     | current memory leak: 3.51 B/s (using 1427 data points, chi2=2.09)
[2025-11-20 20:02:03] 2025-11-20 19:01:20,567 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 20:02:03] 2025-11-20 19:01:20,567 | INFO     | ..............................
[2025-11-20 20:02:03] 2025-11-20 19:01:20,568 | INFO     | . Timing measurements:
[2025-11-20 20:02:03] 2025-11-20 19:01:20,568 | INFO     | . get job = 0 s
[2025-11-20 20:02:03] 2025-11-20 19:01:20,568 | INFO     | . initial setup = 10 s
[2025-11-20 20:02:03] 2025-11-20 19:01:20,568 | INFO     | . payload setup = 168 s
[2025-11-20 20:02:03] 2025-11-20 19:01:20,568 | INFO     | . stage-in = 0 s
[2025-11-20 20:02:03] 2025-11-20 19:01:20,568 | INFO     | . payload execution = 89951 s
[2025-11-20 20:02:03] 2025-11-20 19:01:20,568 | INFO     | . stage-out = 5 s
[2025-11-20 20:02:03] 2025-11-20 19:01:20,568 | INFO     | . log creation = 2 s
[2025-11-20 20:02:03] 2025-11-20 19:01:20,568 | INFO     | ..............................
[2025-11-20 20:02:03] 2025-11-20 19:01:20,730 | INFO     | 
[2025-11-20 20:02:03] 2025-11-20 19:01:20,730 | INFO     | job summary report
[2025-11-20 20:02:03] 2025-11-20 19:01:20,730 | INFO     | --------------------------------------------------
[2025-11-20 20:02:03] 2025-11-20 19:01:20,731 | INFO     | PanDA job id: 6891559111
[2025-11-20 20:02:03] 2025-11-20 19:01:20,731 | INFO     | task id: 47493068
[2025-11-20 20:02:03] 2025-11-20 19:01:20,731 | INFO     | errors: (none)
[2025-11-20 20:02:03] 2025-11-20 19:01:20,731 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:02:03] 2025-11-20 19:01:20,731 | INFO     | pilot state: finished 
[2025-11-20 20:02:03] 2025-11-20 19:01:20,731 | INFO     | transexitcode: 0
[2025-11-20 20:02:03] 2025-11-20 19:01:20,731 | INFO     | exeerrorcode: 0
[2025-11-20 20:02:03] 2025-11-20 19:01:20,731 | INFO     | exeerrordiag: 
[2025-11-20 20:02:03] 2025-11-20 19:01:20,731 | INFO     | exitcode: 0
[2025-11-20 20:02:03] 2025-11-20 19:01:20,732 | INFO     | exitmsg: OK
[2025-11-20 20:02:03] 2025-11-20 19:01:20,732 | INFO     | cpuconsumptiontime: 334705 s
[2025-11-20 20:02:03] 2025-11-20 19:01:20,732 | INFO     | nevents: 1000
[2025-11-20 20:02:03] 2025-11-20 19:01:20,732 | INFO     | neventsw: 0
[2025-11-20 20:02:03] 2025-11-20 19:01:20,732 | INFO     | pid: 28552
[2025-11-20 20:02:03] 2025-11-20 19:01:20,732 | INFO     | pgrp: 28552
[2025-11-20 20:02:03] 2025-11-20 19:01:20,732 | INFO     | corecount: 8
[2025-11-20 20:02:03] 2025-11-20 19:01:20,732 | INFO     | event service: False
[2025-11-20 20:02:03] 2025-11-20 19:01:20,732 | INFO     | sizes: {0: 2296368, 1: 2297053, 2: 2297252, 13: 2297252, 24: 2297308, 34: 2297336, 45: 2297492, 56: 2297520, 67: 2297548, 77: 2297576, 88: 2297632, 96: 2298202, 99
[2025-11-20 20:02:03] 2025-11-20 19:01:20,733 | INFO     | --------------------------------------------------
[2025-11-20 20:02:03] 2025-11-20 19:01:20,733 | INFO     | 
[2025-11-20 20:02:03] 2025-11-20 19:01:20,733 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-20 20:02:03] 2025-11-20 19:01:21,093 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,093 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,093 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,093 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,093 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,094 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,095 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:02:03] 2025-11-20 19:01:21,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,095 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:02:03] 2025-11-20 19:01:21,095 | INFO     | job 6891559111 has completed (purged errors)
[2025-11-20 20:02:03] 2025-11-20 19:01:21,095 | INFO     | overall cleanup function is called
[2025-11-20 20:02:03] 2025-11-20 19:01:22,118 | INFO     | --- collectZombieJob: --- 10, [28552]
[2025-11-20 20:02:03] 2025-11-20 19:01:22,118 | INFO     | zombie collector waiting for pid 28552
[2025-11-20 20:02:03] 2025-11-20 19:01:22,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:02:03] 2025-11-20 19:01:22,118 | INFO     | collected zombie processes
[2025-11-20 20:02:03] 2025-11-20 19:01:22,118 | INFO     | will attempt to kill all subprocesses of pid=28552
[2025-11-20 20:02:03] 2025-11-20 19:01:22,231 | INFO     | process IDs to be killed: [28552] (in reverse order)
[2025-11-20 20:02:03] 2025-11-20 19:01:22,733 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:02:03] 2025-11-20 19:01:22,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:02:03] 2025-11-20 19:01:22,738 | INFO     | did not find any defunct processes belonging to 28552
[2025-11-20 20:02:03] 2025-11-20 19:01:22,752 | INFO     | did not find any defunct processes belonging to 28552
[2025-11-20 20:02:03] 2025-11-20 19:01:22,812 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:02:03] 2025-11-20 19:01:22,812 | INFO     | ready for new job
[2025-11-20 20:02:03] 2025-11-20 19:01:22,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:02:03] 2025-11-20 19:01:22,819 | INFO     | ***************************************
[2025-11-20 20:02:03] 2025-11-20 19:01:22,820 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:02:03] 2025-11-20 19:01:22,820 | INFO     | ***************************************
[2025-11-20 20:02:03] 2025-11-20 19:01:22,820 | INFO     | 
[2025-11-20 20:02:03] 2025-11-20 19:01:22,820 | INFO     | pilot is running in a VM
[2025-11-20 20:02:03] 2025-11-20 19:01:22,821 | INFO     | architecture information:
[2025-11-20 20:02:03] 2025-11-20 19:01:22,833 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:02:03] 2025-11-20 19:01:23,112 | INFO     | cat /etc/os-release:
[2025-11-20 20:02:03] NAME="CentOS Linux"
[2025-11-20 20:02:03] VERSION="7 (Core)"
[2025-11-20 20:02:03] ID="centos"
[2025-11-20 20:02:03] ID_LIKE="rhel fedora"
[2025-11-20 20:02:03] VERSION_ID="7"
[2025-11-20 20:02:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:02:03] ANSI_COLOR="0;31"
[2025-11-20 20:02:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:02:03] HOME_URL="https://www.centos.org/"
[2025-11-20 20:02:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:02:03] 
[2025-11-20 20:02:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:02:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:02:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:02:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:02:03] 
[2025-11-20 20:02:03] 2025-11-20 19:01:23,113 | INFO     | ***************************************
[2025-11-20 20:02:03] 2025-11-20 19:01:23,616 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-20 20:02:03] 2025-11-20 19:01:23,879 | INFO     | sufficient remaining disk space (494212743168 B)
[2025-11-20 20:02:03] 2025-11-20 19:01:23,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:02:03] 2025-11-20 19:01:23,879 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:02:03] 2025-11-20 19:01:23,879 | INFO     | update_server=False
[2025-11-20 20:02:03] 2025-11-20 19:01:23,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:02:03] 2025-11-20 19:01:23,968 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:02:03] 2025-11-20 19:01:23,968 | INFO     | aborting loop
[2025-11-20 20:02:03] 2025-11-20 19:01:24,502 | INFO     | all data control threads have been joined
[2025-11-20 20:02:03] 2025-11-20 19:01:24,885 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:24,895 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:24,974 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:25,084 | INFO     | all payload control threads have been joined
[2025-11-20 20:02:03] 2025-11-20 19:01:25,140 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:25,143 | INFO     | all job control threads have been joined
[2025-11-20 20:02:03] 2025-11-20 19:01:25,210 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:25,225 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:25,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:02:03] 2025-11-20 19:01:25,508 | INFO     | [data] control thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:25,510 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:25,756 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:02:03] 2025-11-20 19:01:25,934 | INFO     | [job] validate thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:26,090 | INFO     | [payload] control thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:26,124 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:26,149 | INFO     | [job] control thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:26,292 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:26,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:02:03] 2025-11-20 19:01:26,762 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:27,290 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:30,743 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:02:03] 2025-11-20 19:01:52,746 | INFO     | PID=21959 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:02:03] 2025-11-20 19:01:52,746 | INFO     | .. there are 9 such processes running
[2025-11-20 20:02:03] 2025-11-20 19:01:52,746 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:02:03] 2025-11-20 19:01:52,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:02:03] 2025-11-20 19:01:52,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:02:03] 2025-11-20 19:01:53,574 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:02:03] 2025-11-20 19:01:53,585 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139650954315584)>', '<ExcThread(monitor, started 139649980819200)>']
[2025-11-20 20:02:03] 2025-11-20 19:01:53,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:02:03] 2025-11-20 19:01:53,752 | INFO     | [monitor] control thread has ended
[2025-11-20 20:02:03] 2025-11-20 19:01:58,611 | INFO     | all workflow threads have been joined
[2025-11-20 20:02:03] 2025-11-20 19:01:58,611 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:02:03] 2025-11-20 19:01:58,611 | INFO     | traces error code: 0
[2025-11-20 20:02:03] 2025-11-20 19:01:58,612 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:02:03] 2025-11-20 19:01:59,063 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:02:03] 2025-11-20 19:01:59,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:02:03] 2025-11-20 19:01:59,172 [wrapper] pilotpid: 21959
[2025-11-20 20:02:03] 2025-11-20 19:01:59,239 [wrapper] Pilot exit status: 0
[2025-11-20 20:02:03] 2025-11-20 19:01:59,593 [wrapper] pandaids: 6891559111
[2025-11-20 20:02:03] 2025-11-20 19:02:00,382 [wrapper] cleanup supervisor_pilot  8145 21960
[2025-11-20 20:02:03] 2025-11-20 19:02:00,461 [wrapper] Test setup, not cleaning
[2025-11-20 20:02:03] 2025-11-20 19:02:00,565 [wrapper] apfmon messages muted
[2025-11-20 20:02:03] 2025-11-20 19:02:00,659 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:02:03] 2025-11-20 19:02:00,734 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:02:03]  *** Error codes and diagnostics ***
[2025-11-20 20:02:03]     "exeErrorCode": 0,
[2025-11-20 20:02:03]     "exeErrorDiag": "",
[2025-11-20 20:02:03]     "pilotErrorCode": 0,
[2025-11-20 20:02:03]     "pilotErrorDiag": "",
[2025-11-20 20:02:03]  *** Listing of results directory ***
[2025-11-20 20:02:03] total 1325996
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:02:03] -rwx------. 1 boinc boinc     36292 Nov 18 16:24 runpilot2-wrapper.sh
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:24 queuedata.json
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:02:03] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:50 run_atlas
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:50 job.xml
[2025-11-20 20:02:03] -rw-r--r--. 2 boinc boinc 410317315 Nov 19 18:50 EVNT.47493065._000079.pool.root.1
[2025-11-20 20:02:03] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:50 start_atlas.sh
[2025-11-20 20:02:03] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:50 shared
[2025-11-20 20:02:03] -rw-r--r--. 2 boinc boinc    590096 Nov 19 18:50 input.tar.gz
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc      6390 Nov 19 18:50 init_data.xml
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:50 boinc_lockfile
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc      2771 Nov 19 18:50 pandaJob.out
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc    989434 Nov 19 18:54 agis_schedconf.cvmfs.json
[2025-11-20 20:02:03] drwx------. 5 boinc boinc      4096 Nov 19 18:54 pilot3
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:45 boinc_task_state.xml
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc 914348275 Nov 20 19:58 HITS.47493068._000782.pool.root.1
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc      1034 Nov 20 19:59 memory_monitor_summary.json
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc   1526164 Nov 20 19:59 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc   2554850 Nov 20 19:59 log.47493068._000782.job.log.tgz.1
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc      8641 Nov 20 20:01 heartbeat.json
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc        95 Nov 20 20:01 pilot_heartbeat.json
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:01 wrapper_checkpoint.txt
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:01 boinc_mmap_file
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc      4884 Nov 20 20:01 pilotlog.txt
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc  12066428 Nov 20 20:02 log.47493068._000782.job.log.1
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc       353 Nov 20 20:02 output.list
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:02 runtime_log
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc  14643200 Nov 20 20:02 result.tar.gz
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc      8703 Nov 20 20:02 runtime_log.err
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc       662 Nov 20 20:02 CTuMDmUkcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtLFKDmQY5VYm.diag
[2025-11-20 20:02:03] -rw-r--r--. 1 boinc boinc     20896 Nov 20 20:02 stderr.txt
[2025-11-20 20:02:03] HITS file was successfully produced:
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc 914348275 Nov 20 19:58 shared/HITS.pool.root.1
[2025-11-20 20:02:03]  *** Contents of shared directory: ***
[2025-11-20 20:02:03] total 1308520
[2025-11-20 20:02:03] -rw-r--r--. 2 boinc boinc 410317315 Nov 19 18:50 ATLAS.root_0
[2025-11-20 20:02:03] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:50 start_atlas.sh
[2025-11-20 20:02:03] -rw-r--r--. 2 boinc boinc    590096 Nov 19 18:50 input.tar.gz
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc 914348275 Nov 20 19:58 HITS.pool.root.1
[2025-11-20 20:02:03] -rw-------. 1 boinc boinc  14643200 Nov 20 20:02 result.tar.gz
20:02:05 (18177): run_atlas exited; CPU time 335288.125978
20:02:05 (18177): called boinc_finish(0)

</stderr_txt>
]]>

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