Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:32:22 (27636): wrapper (7.7.26015): starting
18:32:22 (27636): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:32:22] Arguments: --nthreads 8
[2025-11-19 18:32:22] Threads: 8
[2025-11-19 18:32:22] Checking for CVMFS
[2025-11-19 18:32:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:32:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:32:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:32:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:32:25] 2.11.2.0 15591 78891 102192 153052 0 292 20307071 25165825 4635 130560 3 21115741 99.860 12733660 2096 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:32:25] CVMFS is ok
[2025-11-19 18:32:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:32:25] Checking for apptainer binary...
[2025-11-19 18:32:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:32:25] Running /usr/bin/apptainer --version
[2025-11-19 18:32:25] apptainer version 1.3.2-1.el7
[2025-11-19 18:32:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:32:42] cg-vwn260.simple-grid.lan
[2025-11-19 18:32:42] apptainer works
[2025-11-19 18:32:42] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:32:42] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:32:42] Starting ATLAS job with PandaID=6891559092
[2025-11-19 18:32:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:38:37]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:38:37] 2025-11-20 19:37:38,793 | INFO     | monitor loop #6258: job 0:6891559092 is in state 'finished'
[2025-11-20 20:38:37] 2025-11-20 19:37:38,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:38:37] 2025-11-20 19:37:40,562 | INFO     | time since job start (93654s) is within the limit (172800.0s)
[2025-11-20 20:38:37] 2025-11-20 19:37:41,303 | INFO     | monitor loop #6259: job 0:6891559092 is in state 'finished'
[2025-11-20 20:38:37] 2025-11-20 19:37:41,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:38:37] 2025-11-20 19:37:42,585 | INFO     | time since job start (93656s) is within the limit (172800.0s)
[2025-11-20 20:38:37] 2025-11-20 19:37:43,807 | INFO     | monitor loop #6260: job 0:6891559092 is in state 'finished'
[2025-11-20 20:38:37] 2025-11-20 19:37:43,808 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:38:37] 2025-11-20 19:37:44,592 | INFO     | time since job start (93658s) is within the limit (172800.0s)
[2025-11-20 20:38:37] 2025-11-20 19:37:46,317 | INFO     | monitor loop #6261: job 0:6891559092 is in state 'finished'
[2025-11-20 20:38:37] 2025-11-20 19:37:46,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:38:37] 2025-11-20 19:37:46,599 | INFO     | time since job start (93660s) is within the limit (172800.0s)
[2025-11-20 20:38:37] 2025-11-20 19:37:48,606 | INFO     | time since job start (93662s) is within the limit (172800.0s)
[2025-11-20 20:38:37] 2025-11-20 19:37:48,820 | INFO     | monitor loop #6262: job 0:6891559092 is in state 'finished'
[2025-11-20 20:38:37] 2025-11-20 19:37:48,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:38:37] 2025-11-20 19:37:48,948 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 20:38:37] 2025-11-20 19:37:48,949 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 20:38:37] 2025-11-20 19:37:48,951 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891559092/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 20:38:37] 2025-11-20 19:37:48,952 | INFO     | extracted standard info from prmon json
[2025-11-20 20:38:37] 2025-11-20 19:37:48,953 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 20:38:37] 2025-11-20 19:37:48,953 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 20:38:37] 2025-11-20 19:37:48,986 | INFO     | fitting pss+swap vs Time
[2025-11-20 20:38:37] 2025-11-20 19:37:48,989 | INFO     | sum of square deviations: 1104066910907.3552
[2025-11-20 20:38:37] 2025-11-20 19:37:49,057 | INFO     | sum of deviations: 4689387254230.627
[2025-11-20 20:38:37] 2025-11-20 19:37:49,060 | INFO     | mean x: 1763620861.1270466
[2025-11-20 20:38:37] 2025-11-20 19:37:49,060 | INFO     | mean y: 2848184.682383759
[2025-11-20 20:38:37] 2025-11-20 19:37:49,061 | INFO     | intersect: -7487912661.204786
[2025-11-20 20:38:37] 2025-11-20 19:37:49,063 | INFO     | chi2: 24.099968063632375
[2025-11-20 20:38:37] 2025-11-20 19:37:49,066 | INFO     | sum of square deviations: 1093257456378.4802
[2025-11-20 20:38:37] 2025-11-20 19:37:49,138 | INFO     | sum of deviations: 5169711659015.968
[2025-11-20 20:38:37] 2025-11-20 19:37:49,139 | INFO     | mean x: 1763620708.630749
[2025-11-20 20:38:37] 2025-11-20 19:37:49,139 | INFO     | mean y: 2854961.6458607097
[2025-11-20 20:38:37] 2025-11-20 19:37:49,139 | INFO     | intersect: -8336818814.458699
[2025-11-20 20:38:37] 2025-11-20 19:37:49,141 | INFO     | chi2: 21.279762664114752
[2025-11-20 20:38:37] 2025-11-20 19:37:49,141 | INFO     | current chi2=21.279762664114752 (change=11.702112600611295 %)
[2025-11-20 20:38:37] 2025-11-20 19:37:49,141 | INFO     | right removable region: 1521
[2025-11-20 20:38:37] 2025-11-20 19:37:49,144 | INFO     | sum of square deviations: 1093256406568.4816
[2025-11-20 20:38:37] 2025-11-20 19:37:49,226 | INFO     | sum of deviations: 4035045174453.451
[2025-11-20 20:38:37] 2025-11-20 19:37:49,226 | INFO     | mean x: 1763621013.630749
[2025-11-20 20:38:37] 2025-11-20 19:37:49,226 | INFO     | mean y: 2857415.2339027594
[2025-11-20 20:38:37] 2025-11-20 19:37:49,227 | INFO     | intersect: -6506402825.87651
[2025-11-20 20:38:37] 2025-11-20 19:37:49,228 | INFO     | chi2: 19.08924587068948
[2025-11-20 20:38:37] 2025-11-20 19:37:49,229 | INFO     | current chi2=19.08924587068948 (change=20.791405945903445 %)
[2025-11-20 20:38:37] 2025-11-20 19:37:49,229 | INFO     | left removable region: 10
[2025-11-20 20:38:37] 2025-11-20 19:37:49,231 | INFO     | sum of square deviations: 1069723417274.8114
[2025-11-20 20:38:37] 2025-11-20 19:37:49,299 | INFO     | sum of deviations: 4034168310264.5947
[2025-11-20 20:38:37] 2025-11-20 19:37:49,300 | INFO     | mean x: 1763620983.1389809
[2025-11-20 20:38:37] 2025-11-20 19:37:49,300 | INFO     | mean y: 2874483.9543348774
[2025-11-20 20:38:37] 2025-11-20 19:37:49,300 | INFO     | intersect: -6648138073.686245
[2025-11-20 20:38:37] 2025-11-20 19:37:49,302 | INFO     | chi2: 11.322680428727615
[2025-11-20 20:38:37] 2025-11-20 19:37:49,303 | INFO     | current memory leak: 3.77 B/s (using 1511 data points, chi2=11.32)
[2025-11-20 20:38:37] 2025-11-20 19:37:49,305 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 20:38:37] 2025-11-20 19:37:49,306 | INFO     | ..............................
[2025-11-20 20:38:37] 2025-11-20 19:37:49,306 | INFO     | . Timing measurements:
[2025-11-20 20:38:37] 2025-11-20 19:37:49,306 | INFO     | . get job = 0 s
[2025-11-20 20:38:37] 2025-11-20 19:37:49,306 | INFO     | . initial setup = 10 s
[2025-11-20 20:38:37] 2025-11-20 19:37:49,306 | INFO     | . payload setup = 146 s
[2025-11-20 20:38:37] 2025-11-20 19:37:49,306 | INFO     | . stage-in = 0 s
[2025-11-20 20:38:37] 2025-11-20 19:37:49,307 | INFO     | . payload execution = 93295 s
[2025-11-20 20:38:37] 2025-11-20 19:37:49,307 | INFO     | . stage-out = 3 s
[2025-11-20 20:38:37] 2025-11-20 19:37:49,307 | INFO     | . log creation = 1 s
[2025-11-20 20:38:37] 2025-11-20 19:37:49,307 | INFO     | ..............................
[2025-11-20 20:38:37] 2025-11-20 19:37:49,761 | INFO     | 
[2025-11-20 20:38:37] 2025-11-20 19:37:49,762 | INFO     | job summary report
[2025-11-20 20:38:37] 2025-11-20 19:37:49,762 | INFO     | --------------------------------------------------
[2025-11-20 20:38:37] 2025-11-20 19:37:49,762 | INFO     | PanDA job id: 6891559092
[2025-11-20 20:38:37] 2025-11-20 19:37:49,762 | INFO     | task id: 47493068
[2025-11-20 20:38:37] 2025-11-20 19:37:49,762 | INFO     | errors: (none)
[2025-11-20 20:38:37] 2025-11-20 19:37:49,762 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:38:37] 2025-11-20 19:37:49,762 | INFO     | pilot state: finished 
[2025-11-20 20:38:37] 2025-11-20 19:37:49,762 | INFO     | transexitcode: 0
[2025-11-20 20:38:37] 2025-11-20 19:37:49,762 | INFO     | exeerrorcode: 0
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | exeerrordiag: 
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | exitcode: 0
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | exitmsg: OK
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | cpuconsumptiontime: 343994 s
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | nevents: 1000
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | neventsw: 0
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | pid: 5584
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | pgrp: 5584
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | corecount: 8
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | event service: False
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | sizes: {0: 2297025, 1: 2297224, 12: 2297224, 23: 2297252, 34: 2297280, 44: 2297308, 55: 2297464, 66: 2297492, 77: 2297520, 88: 2297576, 98: 2297604, 99: 2298174, 1
[2025-11-20 20:38:37] 2025-11-20 19:37:49,763 | INFO     | --------------------------------------------------
[2025-11-20 20:38:37] 2025-11-20 19:37:49,764 | INFO     | 
[2025-11-20 20:38:37] 2025-11-20 19:37:49,764 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-20 20:38:37] 2025-11-20 19:37:49,822 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,822 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,822 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,822 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,822 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,823 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,824 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:38:37] 2025-11-20 19:37:49,824 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,824 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:38:37] 2025-11-20 19:37:49,824 | INFO     | job 6891559092 has completed (purged errors)
[2025-11-20 20:38:37] 2025-11-20 19:37:49,824 | INFO     | overall cleanup function is called
[2025-11-20 20:38:37] 2025-11-20 19:37:50,848 | INFO     | --- collectZombieJob: --- 10, [5584]
[2025-11-20 20:38:37] 2025-11-20 19:37:50,849 | INFO     | zombie collector waiting for pid 5584
[2025-11-20 20:38:37] 2025-11-20 19:37:50,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:38:37] 2025-11-20 19:37:50,849 | INFO     | collected zombie processes
[2025-11-20 20:38:37] 2025-11-20 19:37:50,849 | INFO     | will attempt to kill all subprocesses of pid=5584
[2025-11-20 20:38:37] 2025-11-20 19:37:50,956 | INFO     | process IDs to be killed: [5584] (in reverse order)
[2025-11-20 20:38:37] 2025-11-20 19:37:51,067 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:38:37] 2025-11-20 19:37:51,067 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:38:37] 2025-11-20 19:37:51,071 | INFO     | did not find any defunct processes belonging to 5584
[2025-11-20 20:38:37] 2025-11-20 19:37:51,074 | INFO     | did not find any defunct processes belonging to 5584
[2025-11-20 20:38:37] 2025-11-20 19:37:51,076 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:38:37] 2025-11-20 19:37:51,077 | INFO     | ready for new job
[2025-11-20 20:38:37] 2025-11-20 19:37:51,077 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:38:37] 2025-11-20 19:37:51,083 | INFO     | ***************************************
[2025-11-20 20:38:37] 2025-11-20 19:37:51,084 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:38:37] 2025-11-20 19:37:51,084 | INFO     | ***************************************
[2025-11-20 20:38:37] 2025-11-20 19:37:51,084 | INFO     | 
[2025-11-20 20:38:37] 2025-11-20 19:37:51,085 | INFO     | pilot is running in a VM
[2025-11-20 20:38:37] 2025-11-20 19:37:51,085 | INFO     | architecture information:
[2025-11-20 20:38:37] 2025-11-20 19:37:51,085 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:38:37] 2025-11-20 19:37:51,110 | INFO     | cat /etc/os-release:
[2025-11-20 20:38:37] NAME="CentOS Linux"
[2025-11-20 20:38:37] VERSION="7 (Core)"
[2025-11-20 20:38:37] ID="centos"
[2025-11-20 20:38:37] ID_LIKE="rhel fedora"
[2025-11-20 20:38:37] VERSION_ID="7"
[2025-11-20 20:38:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:38:37] ANSI_COLOR="0;31"
[2025-11-20 20:38:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:38:37] HOME_URL="https://www.centos.org/"
[2025-11-20 20:38:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:38:37] 
[2025-11-20 20:38:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:38:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:38:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:38:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:38:37] 
[2025-11-20 20:38:37] 2025-11-20 19:37:51,111 | INFO     | ***************************************
[2025-11-20 20:38:37] 2025-11-20 19:37:51,615 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-20 20:38:37] 2025-11-20 19:37:51,812 | INFO     | sufficient remaining disk space (494998126592 B)
[2025-11-20 20:38:37] 2025-11-20 19:37:51,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:38:37] 2025-11-20 19:37:51,813 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:38:37] 2025-11-20 19:37:51,813 | INFO     | update_server=False
[2025-11-20 20:38:37] 2025-11-20 19:37:51,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:38:37] 2025-11-20 19:37:51,813 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:38:37] 2025-11-20 19:37:52,252 | INFO     | all payload control threads have been joined
[2025-11-20 20:38:37] 2025-11-20 19:37:52,337 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:38:37] 2025-11-20 19:37:52,338 | INFO     | aborting loop
[2025-11-20 20:38:37] 2025-11-20 19:37:52,444 | INFO     | all data control threads have been joined
[2025-11-20 20:38:37] 2025-11-20 19:37:52,465 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:38:37] 2025-11-20 19:37:52,819 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:53,258 | INFO     | [payload] control thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:53,343 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:53,432 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:53,450 | INFO     | [data] control thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:53,489 | INFO     | all job control threads have been joined
[2025-11-20 20:38:37] 2025-11-20 19:37:53,513 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:53,822 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:53,829 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:53,840 | INFO     | [job] validate thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:53,860 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:54,380 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:54,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:38:37] 2025-11-20 19:37:54,471 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:54,495 | INFO     | [job] control thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:55,472 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:37:55,824 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:38:02,459 | INFO     | job.realtimelogging is not enabled
[2025-11-20 20:38:37] 2025-11-20 19:38:03,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:38:37] 2025-11-20 19:38:21,769 | INFO     | PID=31416 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:38:37] 2025-11-20 19:38:21,770 | INFO     | .. there are 9 such processes running
[2025-11-20 20:38:37] 2025-11-20 19:38:21,771 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:38:37] 2025-11-20 19:38:21,771 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:38:37] 2025-11-20 19:38:21,771 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:38:37] 2025-11-20 19:38:30,126 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:38:37] 2025-11-20 19:38:31,878 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140257109661504)>', '<ExcThread(monitor, started 140256821098240)>']
[2025-11-20 20:38:37] 2025-11-20 19:38:32,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:38:37] 2025-11-20 19:38:32,837 | INFO     | [monitor] control thread has ended
[2025-11-20 20:38:37] 2025-11-20 19:38:36,904 | INFO     | all workflow threads have been joined
[2025-11-20 20:38:37] 2025-11-20 19:38:36,905 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:38:37] 2025-11-20 19:38:36,905 | INFO     | traces error code: 0
[2025-11-20 20:38:37] 2025-11-20 19:38:36,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:38:37] 2025-11-20 19:38:37,196 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:38:37] 2025-11-20 19:38:37,208 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:38:37] 2025-11-20 19:38:37,224 [wrapper] pilotpid: 31416
[2025-11-20 20:38:37] 2025-11-20 19:38:37,238 [wrapper] Pilot exit status: 0
[2025-11-20 20:38:37] 2025-11-20 19:38:37,295 [wrapper] pandaids: 6891559092
[2025-11-20 20:38:37] 2025-11-20 19:38:37,340 [wrapper] cleanup supervisor_pilot 29945 31417
[2025-11-20 20:38:37] 2025-11-20 19:38:37,355 [wrapper] Test setup, not cleaning
[2025-11-20 20:38:37] 2025-11-20 19:38:37,360 [wrapper] apfmon messages muted
[2025-11-20 20:38:37] 2025-11-20 19:38:37,382 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:38:37] 2025-11-20 19:38:37,386 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:38:37]  *** Error codes and diagnostics ***
[2025-11-20 20:38:37]     "exeErrorCode": 0,
[2025-11-20 20:38:37]     "exeErrorDiag": "",
[2025-11-20 20:38:37]     "pilotErrorCode": 0,
[2025-11-20 20:38:37]     "pilotErrorDiag": "",
[2025-11-20 20:38:37]  *** Listing of results directory ***
[2025-11-20 20:38:37] total 1341552
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:38:37] -rwx------. 1 boinc boinc     36292 Nov 18 16:24 runpilot2-wrapper.sh
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:24 queuedata.json
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:38:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:32 run_atlas
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:32 job.xml
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc      6391 Nov 19 18:32 init_data.xml
[2025-11-20 20:38:37] -rw-r--r--. 2 boinc boinc 410436407 Nov 19 18:32 EVNT.47493065._000077.pool.root.1
[2025-11-20 20:38:37] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:32 start_atlas.sh
[2025-11-20 20:38:37] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:32 shared
[2025-11-20 20:38:37] -rw-r--r--. 2 boinc boinc    590100 Nov 19 18:32 input.tar.gz
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:32 boinc_lockfile
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc      2771 Nov 19 18:32 pandaJob.out
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc    989434 Nov 19 18:36 agis_schedconf.cvmfs.json
[2025-11-20 20:38:37] drwx------. 5 boinc boinc      4096 Nov 19 18:36 pilot3
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc       533 Nov 20 20:18 boinc_task_state.xml
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc 929236692 Nov 20 20:36 HITS.47493068._000763.pool.root.1
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc      1033 Nov 20 20:37 memory_monitor_summary.json
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc   1526164 Nov 20 20:37 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc   2595315 Nov 20 20:37 log.47493068._000763.job.log.tgz.1
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc      7946 Nov 20 20:37 heartbeat.json
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:38 boinc_mmap_file
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:38 wrapper_checkpoint.txt
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc        95 Nov 20 20:38 pilot_heartbeat.json
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc      4956 Nov 20 20:38 pilotlog.txt
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc  12485619 Nov 20 20:38 log.47493068._000763.job.log.1
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc       353 Nov 20 20:38 output.list
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:38 runtime_log
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc  15104000 Nov 20 20:38 result.tar.gz
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc      8703 Nov 20 20:38 runtime_log.err
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc       662 Nov 20 20:38 FDaMDmUkcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcLFKDmy1ecRn.diag
[2025-11-20 20:38:37] -rw-r--r--. 1 boinc boinc     21409 Nov 20 20:38 stderr.txt
[2025-11-20 20:38:37] HITS file was successfully produced:
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc 929236692 Nov 20 20:36 shared/HITS.pool.root.1
[2025-11-20 20:38:37]  *** Contents of shared directory: ***
[2025-11-20 20:38:37] total 1323628
[2025-11-20 20:38:37] -rw-r--r--. 2 boinc boinc 410436407 Nov 19 18:32 ATLAS.root_0
[2025-11-20 20:38:37] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:32 start_atlas.sh
[2025-11-20 20:38:37] -rw-r--r--. 2 boinc boinc    590100 Nov 19 18:32 input.tar.gz
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc 929236692 Nov 20 20:36 HITS.pool.root.1
[2025-11-20 20:38:37] -rw-------. 1 boinc boinc  15104000 Nov 20 20:38 result.tar.gz
20:38:39 (27636): run_atlas exited; CPU time 344676.983001
20:38:39 (27636): called boinc_finish(0)

</stderr_txt>
]]>

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