Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:38:24 (28374): wrapper (7.7.26015): starting
18:38:24 (28374): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:38:24] Arguments: --nthreads 8
[2025-11-19 18:38:24] Threads: 8
[2025-11-19 18:38:24] Checking for CVMFS
[2025-11-19 18:38:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:38:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:38:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:38:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:38:27] 2.11.2.0 19767 70995 94136 153052 3 247 12949160 25165824 4095 130560 2 20200440 99.859 12867829 2364 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:38:27] CVMFS is ok
[2025-11-19 18:38:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:38:27] Checking for apptainer binary...
[2025-11-19 18:38:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:38:27] Running /usr/bin/apptainer --version
[2025-11-19 18:38:27] apptainer version 1.3.2-1.el7
[2025-11-19 18:38:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:38:33] cg-vwn305.simple-grid.lan
[2025-11-19 18:38:33] apptainer works
[2025-11-19 18:38:33] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:38:33] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:38:33] Starting ATLAS job with PandaID=6891562496
[2025-11-19 18:38:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:58:57]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:58:57] 2025-11-20 18:58:18,990 | INFO     | monitor loop #6102: job 0:6891562496 is in state 'finished'
[2025-11-20 19:58:57] 2025-11-20 18:58:18,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:58:57] 2025-11-20 18:58:19,080 | INFO     | time since job start (90978s) is within the limit (172800.0s)
[2025-11-20 19:58:57] 2025-11-20 18:58:21,093 | INFO     | time since job start (90980s) is within the limit (172800.0s)
[2025-11-20 19:58:57] 2025-11-20 18:58:21,496 | INFO     | monitor loop #6103: job 0:6891562496 is in state 'finished'
[2025-11-20 19:58:57] 2025-11-20 18:58:21,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:58:57] 2025-11-20 18:58:22,994 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 19:58:57] 2025-11-20 18:58:22,996 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-20 19:58:57] 2025-11-20 18:58:22,998 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891562496/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 19:58:57] 2025-11-20 18:58:22,998 | INFO     | extracted standard info from prmon json
[2025-11-20 19:58:57] 2025-11-20 18:58:22,998 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 19:58:57] 2025-11-20 18:58:22,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 19:58:57] 2025-11-20 18:58:23,028 | INFO     | fitting pss+swap vs Time
[2025-11-20 19:58:57] 2025-11-20 18:58:23,030 | INFO     | sum of square deviations: 1011351852935.1089
[2025-11-20 19:58:57] 2025-11-20 18:58:23,089 | INFO     | sum of deviations: 3738414344732.708
[2025-11-20 19:58:57] 2025-11-20 18:58:23,090 | INFO     | mean x: 1763619865.3324342
[2025-11-20 19:58:57] 2025-11-20 18:58:23,090 | INFO     | mean y: 2863797.0289952797
[2025-11-20 19:58:57] 2025-11-20 18:58:23,090 | INFO     | intersect: -6516273715.875105
[2025-11-20 19:58:57] 2025-11-20 18:58:23,092 | INFO     | chi2: 12.68846401516966
[2025-11-20 19:58:57] 2025-11-20 18:58:23,094 | INFO     | sum of square deviations: 1001157464453.7013
[2025-11-20 19:58:57] 2025-11-20 18:58:23,105 | INFO     | time since job start (90982s) is within the limit (172800.0s)
[2025-11-20 19:58:57] 2025-11-20 18:58:23,154 | INFO     | sum of deviations: 4237697143126.99
[2025-11-20 19:58:57] 2025-11-20 18:58:23,154 | INFO     | mean x: 1763619712.8369417
[2025-11-20 19:58:57] 2025-11-20 18:58:23,154 | INFO     | mean y: 2871265.1576454667
[2025-11-20 19:58:57] 2025-11-20 18:58:23,154 | INFO     | intersect: -7462174428.458289
[2025-11-20 19:58:57] 2025-11-20 18:58:23,156 | INFO     | chi2: 9.520121919810197
[2025-11-20 19:58:57] 2025-11-20 18:58:23,156 | INFO     | current chi2=9.520121919810197 (change=24.97025716880751 %)
[2025-11-20 19:58:57] 2025-11-20 18:58:23,156 | INFO     | right removable region: 1477
[2025-11-20 19:58:57] 2025-11-20 18:58:23,159 | INFO     | sum of square deviations: 1001156259093.7024
[2025-11-20 19:58:57] 2025-11-20 18:58:23,216 | INFO     | sum of deviations: 3114914215251.2725
[2025-11-20 19:58:57] 2025-11-20 18:58:23,217 | INFO     | mean x: 1763620017.8369417
[2025-11-20 19:58:57] 2025-11-20 18:58:23,217 | INFO     | mean y: 2873122.5446549393
[2025-11-20 19:58:57] 2025-11-20 18:58:23,217 | INFO     | intersect: -5484307339.009879
[2025-11-20 19:58:57] 2025-11-20 18:58:23,218 | INFO     | chi2: 8.055358816074524
[2025-11-20 19:58:57] 2025-11-20 18:58:23,219 | INFO     | current chi2=8.055358816074524 (change=36.51431090127253 %)
[2025-11-20 19:58:57] 2025-11-20 18:58:23,221 | INFO     | sum of square deviations: 991029590680.5948
[2025-11-20 19:58:57] 2025-11-20 18:58:23,278 | INFO     | sum of deviations: 2767892138186.001
[2025-11-20 19:58:57] 2025-11-20 18:58:23,279 | INFO     | mean x: 1763620170.3401222
[2025-11-20 19:58:57] 2025-11-20 18:58:23,279 | INFO     | mean y: 2878344.6666666665
[2025-11-20 19:58:57] 2025-11-20 18:58:23,279 | INFO     | intersect: -4922817568.084311
[2025-11-20 19:58:57] 2025-11-20 18:58:23,281 | INFO     | chi2: 6.511458546151285
[2025-11-20 19:58:57] 2025-11-20 18:58:23,281 | INFO     | current chi2=6.511458546151285 (change=19.16612661427787 %)
[2025-11-20 19:58:57] 2025-11-20 18:58:23,281 | INFO     | left removable region: 20
[2025-11-20 19:58:57] 2025-11-20 18:58:23,283 | INFO     | sum of square deviations: 959085636487.349
[2025-11-20 19:58:57] 2025-11-20 18:58:23,338 | INFO     | sum of deviations: 3186127489372.777
[2025-11-20 19:58:57] 2025-11-20 18:58:23,339 | INFO     | mean x: 1763620292.3452299
[2025-11-20 19:58:57] 2025-11-20 18:58:23,339 | INFO     | mean y: 2890177.2628689087
[2025-11-20 19:58:57] 2025-11-20 18:58:23,339 | INFO     | intersect: -5855939191.548046
[2025-11-20 19:58:57] 2025-11-20 18:58:23,341 | INFO     | chi2: 2.601584592518762
[2025-11-20 19:58:57] 2025-11-20 18:58:23,341 | INFO     | current memory leak: 3.32 B/s (using 1457 data points, chi2=2.60)
[2025-11-20 19:58:57] 2025-11-20 18:58:23,344 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 19:58:57] 2025-11-20 18:58:23,344 | INFO     | ..............................
[2025-11-20 19:58:57] 2025-11-20 18:58:23,344 | INFO     | . Timing measurements:
[2025-11-20 19:58:57] 2025-11-20 18:58:23,344 | INFO     | . get job = 0 s
[2025-11-20 19:58:57] 2025-11-20 18:58:23,344 | INFO     | . initial setup = 3 s
[2025-11-20 19:58:57] 2025-11-20 18:58:23,344 | INFO     | . payload setup = 173 s
[2025-11-20 19:58:57] 2025-11-20 18:58:23,344 | INFO     | . stage-in = 0 s
[2025-11-20 19:58:57] 2025-11-20 18:58:23,344 | INFO     | . payload execution = 90577 s
[2025-11-20 19:58:57] 2025-11-20 18:58:23,345 | INFO     | . stage-out = 4 s
[2025-11-20 19:58:57] 2025-11-20 18:58:23,345 | INFO     | . log creation = 1 s
[2025-11-20 19:58:57] 2025-11-20 18:58:23,345 | INFO     | ..............................
[2025-11-20 19:58:57] 2025-11-20 18:58:23,473 | INFO     | 
[2025-11-20 19:58:57] 2025-11-20 18:58:23,473 | INFO     | job summary report
[2025-11-20 19:58:57] 2025-11-20 18:58:23,473 | INFO     | --------------------------------------------------
[2025-11-20 19:58:57] 2025-11-20 18:58:23,473 | INFO     | PanDA job id: 6891562496
[2025-11-20 19:58:57] 2025-11-20 18:58:23,473 | INFO     | task id: 47493068
[2025-11-20 19:58:57] 2025-11-20 18:58:23,473 | INFO     | errors: (none)
[2025-11-20 19:58:57] 2025-11-20 18:58:23,473 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 19:58:57] 2025-11-20 18:58:23,473 | INFO     | pilot state: finished 
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | transexitcode: 0
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | exeerrorcode: 0
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | exeerrordiag: 
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | exitcode: 0
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | exitmsg: OK
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | cpuconsumptiontime: 337149 s
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | nevents: 1000
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | neventsw: 0
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | pid: 6386
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | pgrp: 6386
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | corecount: 8
[2025-11-20 19:58:57] 2025-11-20 18:58:23,474 | INFO     | event service: False
[2025-11-20 19:58:57] 2025-11-20 18:58:23,475 | INFO     | sizes: {0: 2297023, 1: 2297222, 12: 2297222, 23: 2297250, 33: 2297278, 44: 2297334, 55: 2297490, 66: 2297518, 76: 2297546, 87: 2297602, 98: 2298200, 109: 2298200, 
[2025-11-20 19:58:57] 2025-11-20 18:58:23,475 | INFO     | --------------------------------------------------
[2025-11-20 19:58:57] 2025-11-20 18:58:23,475 | INFO     | 
[2025-11-20 19:58:57] 2025-11-20 18:58:23,475 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-20 19:58:57] 2025-11-20 18:58:23,509 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,510 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,510 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,510 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,510 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,510 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,510 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,510 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 19:58:57] 2025-11-20 18:58:23,511 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,512 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 19:58:57] 2025-11-20 18:58:23,512 | INFO     | job 6891562496 has completed (purged errors)
[2025-11-20 19:58:57] 2025-11-20 18:58:23,512 | INFO     | overall cleanup function is called
[2025-11-20 19:58:57] 2025-11-20 18:58:24,231 | INFO     | PID=32170 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 19:58:57] 2025-11-20 18:58:24,231 | INFO     | .. there are 9 such processes running
[2025-11-20 19:58:57] 2025-11-20 18:58:24,530 | INFO     | --- collectZombieJob: --- 10, [6386]
[2025-11-20 19:58:57] 2025-11-20 18:58:24,530 | INFO     | zombie collector waiting for pid 6386
[2025-11-20 19:58:57] 2025-11-20 18:58:24,530 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 19:58:57] 2025-11-20 18:58:24,530 | INFO     | collected zombie processes
[2025-11-20 19:58:57] 2025-11-20 18:58:24,530 | INFO     | will attempt to kill all subprocesses of pid=6386
[2025-11-20 19:58:57] 2025-11-20 18:58:24,628 | INFO     | process IDs to be killed: [6386] (in reverse order)
[2025-11-20 19:58:57] 2025-11-20 18:58:24,707 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 19:58:57] 2025-11-20 18:58:24,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 19:58:57] 2025-11-20 18:58:24,711 | INFO     | did not find any defunct processes belonging to 6386
[2025-11-20 19:58:57] 2025-11-20 18:58:24,714 | INFO     | did not find any defunct processes belonging to 6386
[2025-11-20 19:58:57] 2025-11-20 18:58:24,717 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 19:58:57] 2025-11-20 18:58:24,717 | INFO     | ready for new job
[2025-11-20 19:58:57] 2025-11-20 18:58:24,717 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 19:58:57] 2025-11-20 18:58:24,725 | INFO     | ***************************************
[2025-11-20 19:58:57] 2025-11-20 18:58:24,725 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 19:58:57] 2025-11-20 18:58:24,725 | INFO     | ***************************************
[2025-11-20 19:58:57] 2025-11-20 18:58:24,726 | INFO     | 
[2025-11-20 19:58:57] 2025-11-20 18:58:24,726 | INFO     | pilot is running in a VM
[2025-11-20 19:58:57] 2025-11-20 18:58:24,726 | INFO     | architecture information:
[2025-11-20 19:58:57] 2025-11-20 18:58:24,727 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:58:57] 2025-11-20 18:58:24,749 | INFO     | cat /etc/os-release:
[2025-11-20 19:58:57] NAME="CentOS Linux"
[2025-11-20 19:58:57] VERSION="7 (Core)"
[2025-11-20 19:58:57] ID="centos"
[2025-11-20 19:58:57] ID_LIKE="rhel fedora"
[2025-11-20 19:58:57] VERSION_ID="7"
[2025-11-20 19:58:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:58:57] ANSI_COLOR="0;31"
[2025-11-20 19:58:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:58:57] HOME_URL="https://www.centos.org/"
[2025-11-20 19:58:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:58:57] 
[2025-11-20 19:58:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:58:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:58:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:58:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:58:57] 
[2025-11-20 19:58:57] 2025-11-20 18:58:24,749 | INFO     | ***************************************
[2025-11-20 19:58:57] 2025-11-20 18:58:25,254 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-20 19:58:57] 2025-11-20 18:58:25,305 | INFO     | sufficient remaining disk space (495337865216 B)
[2025-11-20 19:58:57] 2025-11-20 18:58:25,305 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:58:57] 2025-11-20 18:58:25,305 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:58:57] 2025-11-20 18:58:25,306 | INFO     | update_server=False
[2025-11-20 19:58:57] 2025-11-20 18:58:25,306 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:58:57] 2025-11-20 18:58:25,306 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:58:57] 2025-11-20 18:58:25,307 | INFO     | aborting loop
[2025-11-20 19:58:57] 2025-11-20 18:58:25,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:58:57] 2025-11-20 18:58:25,597 | INFO     | all data control threads have been joined
[2025-11-20 19:58:57] 2025-11-20 18:58:25,848 | INFO     | all job control threads have been joined
[2025-11-20 19:58:57] 2025-11-20 18:58:25,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:58:57] 2025-11-20 18:58:26,312 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:26,313 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:26,313 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:26,382 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:26,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:26,603 | INFO     | [data] control thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:26,776 | INFO     | all payload control threads have been joined
[2025-11-20 19:58:57] 2025-11-20 18:58:26,855 | INFO     | [job] control thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:26,999 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:27,006 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:27,517 | INFO     | [job] validate thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:27,701 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:27,782 | INFO     | [payload] control thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:27,794 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:27,811 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:27,996 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:28,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:58:57] 2025-11-20 18:58:32,790 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:58:57] 2025-11-20 18:58:39,538 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:58:57] 2025-11-20 18:58:40,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139739329836864)>', '<ExcThread(monitor, started 139738765846272)>']
[2025-11-20 19:58:57] 2025-11-20 18:58:46,021 | INFO     | all workflow threads have been joined
[2025-11-20 19:58:57] 2025-11-20 18:58:46,021 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:58:57] 2025-11-20 18:58:46,021 | INFO     | traces error code: 0
[2025-11-20 19:58:57] 2025-11-20 18:58:46,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:58:57] 2025-11-20 18:58:56,466 | INFO     | PID=32170 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 19:58:57] 2025-11-20 18:58:56,467 | INFO     | .. there are 9 such processes running
[2025-11-20 19:58:57] 2025-11-20 18:58:56,467 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:58:57] 2025-11-20 18:58:56,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:58:57] 2025-11-20 18:58:56,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:58:57] 2025-11-20 18:58:56,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:58:57] 2025-11-20 18:58:56,468 | INFO     | [monitor] control thread has ended
[2025-11-20 19:58:57] 2025-11-20 18:58:56,767 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:58:57] 2025-11-20 18:58:56,817 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:58:57] 2025-11-20 18:58:56,832 [wrapper] pilotpid: 32170
[2025-11-20 19:58:57] 2025-11-20 18:58:56,853 [wrapper] Pilot exit status: 0
[2025-11-20 19:58:57] 2025-11-20 18:58:56,900 [wrapper] pandaids: 6891562496
[2025-11-20 19:58:57] 2025-11-20 18:58:56,963 [wrapper] cleanup supervisor_pilot  5391 32171
[2025-11-20 19:58:57] 2025-11-20 18:58:56,982 [wrapper] Test setup, not cleaning
[2025-11-20 19:58:57] 2025-11-20 18:58:56,999 [wrapper] apfmon messages muted
[2025-11-20 19:58:57] 2025-11-20 18:58:57,012 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:58:57] 2025-11-20 18:58:57,015 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:58:57]  *** Error codes and diagnostics ***
[2025-11-20 19:58:57]     "exeErrorCode": 0,
[2025-11-20 19:58:57]     "exeErrorDiag": "",
[2025-11-20 19:58:57]     "pilotErrorCode": 0,
[2025-11-20 19:58:57]     "pilotErrorDiag": "",
[2025-11-20 19:58:57]  *** Listing of results directory ***
[2025-11-20 19:58:57] total 1323328
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 19:58:57] -rwx------. 1 boinc boinc     36292 Nov 18 16:24 runpilot2-wrapper.sh
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:24 queuedata.json
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:58:57] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:38 run_atlas
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:38 job.xml
[2025-11-20 19:58:57] -rw-r--r--. 2 boinc boinc 408788255 Nov 19 18:38 EVNT.47493065._000105.pool.root.1
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc      6390 Nov 19 18:38 init_data.xml
[2025-11-20 19:58:57] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:38 start_atlas.sh
[2025-11-20 19:58:57] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:38 shared
[2025-11-20 19:58:57] -rw-r--r--. 2 boinc boinc    590099 Nov 19 18:38 input.tar.gz
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:38 boinc_lockfile
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc      2770 Nov 19 18:38 pandaJob.out
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc    989434 Nov 19 18:41 agis_schedconf.cvmfs.json
[2025-11-20 19:58:57] drwx------. 5 boinc boinc      4096 Nov 19 18:42 pilot3
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:41 boinc_task_state.xml
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc 913146261 Nov 20 19:57 HITS.47493068._001041.pool.root.1
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc      1032 Nov 20 19:57 memory_monitor_summary.json
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc   1526164 Nov 20 19:57 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc   2550570 Nov 20 19:58 log.47493068._001041.job.log.tgz.1
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc        96 Nov 20 19:58 pilot_heartbeat.json
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc      8618 Nov 20 19:58 heartbeat.json
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc        29 Nov 20 19:58 wrapper_checkpoint.txt
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc      8192 Nov 20 19:58 boinc_mmap_file
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc       820 Nov 20 19:58 pilotlog.txt
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc  12072269 Nov 20 19:58 log.47493068._001041.job.log.1
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc       353 Nov 20 19:58 output.list
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc       620 Nov 20 19:58 runtime_log
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc  14643200 Nov 20 19:58 result.tar.gz
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc       662 Nov 20 19:58 KyLMDmckcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9CFKDmYihWPn.diag
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc      8703 Nov 20 19:58 runtime_log.err
[2025-11-20 19:58:57] -rw-r--r--. 1 boinc boinc     21283 Nov 20 19:58 stderr.txt
[2025-11-20 19:58:57] HITS file was successfully produced:
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc 913146261 Nov 20 19:57 shared/HITS.pool.root.1
[2025-11-20 19:58:57]  *** Contents of shared directory: ***
[2025-11-20 19:58:57] total 1305852
[2025-11-20 19:58:57] -rw-r--r--. 2 boinc boinc 408788255 Nov 19 18:38 ATLAS.root_0
[2025-11-20 19:58:57] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:38 start_atlas.sh
[2025-11-20 19:58:57] -rw-r--r--. 2 boinc boinc    590099 Nov 19 18:38 input.tar.gz
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc 913146261 Nov 20 19:57 HITS.pool.root.1
[2025-11-20 19:58:57] -rw-------. 1 boinc boinc  14643200 Nov 20 19:58 result.tar.gz
19:58:59 (28374): run_atlas exited; CPU time 337685.148826
19:58:59 (28374): called boinc_finish(0)

</stderr_txt>
]]>

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