Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:14:12 (12697): wrapper (7.7.26015): starting
18:14:12 (12697): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:14:12] Arguments: --nthreads 8
[2025-11-19 18:14:12] Threads: 8
[2025-11-19 18:14:12] Checking for CVMFS
[2025-11-19 18:14:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:14:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:14:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:14:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:14:15] 2.11.2.0 18594 74187 92852 153051 1 137 19615293 25165824 4251 130560 2 20950763 99.892 11478454 2233 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:14:15] CVMFS is ok
[2025-11-19 18:14:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:14:15] Checking for apptainer binary...
[2025-11-19 18:14:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:14:15] Running /usr/bin/apptainer --version
[2025-11-19 18:14:15] apptainer version 1.3.2-1.el7
[2025-11-19 18:14:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:14:38] cg-vwn256.simple-grid.lan
[2025-11-19 18:14:38] apptainer works
[2025-11-19 18:14:38] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:14:38] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:14:38] Starting ATLAS job with PandaID=6891558293
[2025-11-19 18:14:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:09:40]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:09:40] 2025-11-20 19:08:28,666 | INFO     | sum of deviations: 5008926919520.368
[2025-11-20 20:09:40] 2025-11-20 19:08:28,667 | INFO     | mean x: 1763619397.7140026
[2025-11-20 20:09:40] 2025-11-20 19:08:28,667 | INFO     | mean y: 2866661.529722589
[2025-11-20 20:09:40] 2025-11-20 19:08:28,667 | INFO     | intersect: -8206193942.007325
[2025-11-20 20:09:40] 2025-11-20 19:08:28,669 | INFO     | chi2: 18.47481189792398
[2025-11-20 20:09:40] 2025-11-20 19:08:28,671 | INFO     | sum of square deviations: 1065482752257.2745
[2025-11-20 20:09:40] 2025-11-20 19:08:28,747 | INFO     | sum of deviations: 5507785758151.578
[2025-11-20 20:09:40] 2025-11-20 19:08:28,748 | INFO     | mean x: 1763619245.2180252
[2025-11-20 20:09:40] 2025-11-20 19:08:28,748 | INFO     | mean y: 2873819.9343936383
[2025-11-20 20:09:40] 2025-11-20 19:08:28,748 | INFO     | intersect: -9113779585.327293
[2025-11-20 20:09:40] 2025-11-20 19:08:28,750 | INFO     | chi2: 15.48767724019694
[2025-11-20 20:09:40] 2025-11-20 19:08:28,750 | INFO     | current chi2=15.48767724019694 (change=16.168687801702095 %)
[2025-11-20 20:09:40] 2025-11-20 19:08:28,750 | INFO     | right removable region: 1508
[2025-11-20 20:09:40] 2025-11-20 19:08:28,752 | INFO     | sum of square deviations: 1065481631077.2747
[2025-11-20 20:09:40] 2025-11-20 19:08:28,820 | INFO     | sum of deviations: 4356481126695.511
[2025-11-20 20:09:40] 2025-11-20 19:08:28,820 | INFO     | mean x: 1763619550.2180252
[2025-11-20 20:09:40] 2025-11-20 19:08:28,820 | INFO     | mean y: 2876024.275016567
[2025-11-20 20:09:40] 2025-11-20 19:08:28,820 | INFO     | intersect: -7208112003.203073
[2025-11-20 20:09:40] 2025-11-20 19:08:28,822 | INFO     | chi2: 13.457473692307836
[2025-11-20 20:09:40] 2025-11-20 19:08:28,822 | INFO     | current chi2=13.457473692307836 (change=27.157722813837932 %)
[2025-11-20 20:09:40] 2025-11-20 19:08:28,825 | INFO     | sum of square deviations: 1054924853949.8257
[2025-11-20 20:09:40] 2025-11-20 19:08:28,912 | INFO     | sum of deviations: 3781410123300.2036
[2025-11-20 20:09:40] 2025-11-20 19:08:28,912 | INFO     | mean x: 1763619702.7220745
[2025-11-20 20:09:40] 2025-11-20 19:08:28,912 | INFO     | mean y: 2884331.1535904254
[2025-11-20 20:09:40] 2025-11-20 19:08:28,912 | INFO     | intersect: -6318863964.523722
[2025-11-20 20:09:40] 2025-11-20 19:08:28,914 | INFO     | chi2: 9.683641892742518
[2025-11-20 20:09:40] 2025-11-20 19:08:28,914 | INFO     | current chi2=9.683641892742518 (change=28.042646679832668 %)
[2025-11-20 20:09:40] 2025-11-20 19:08:28,917 | INFO     | sum of square deviations: 1044438031622.335
[2025-11-20 20:09:40] 2025-11-20 19:08:28,989 | INFO     | sum of deviations: 3251550233841.899
[2025-11-20 20:09:40] 2025-11-20 19:08:28,990 | INFO     | mean x: 1763619855.2261508
[2025-11-20 20:09:40] 2025-11-20 19:08:28,990 | INFO     | mean y: 2892036.752501668
[2025-11-20 20:09:40] 2025-11-20 19:08:28,990 | INFO     | intersect: -5487619012.295912
[2025-11-20 20:09:40] 2025-11-20 19:08:28,991 | INFO     | chi2: 6.548179716118053
[2025-11-20 20:09:40] 2025-11-20 19:08:28,992 | INFO     | current chi2=6.548179716118053 (change=32.37895629922418 %)
[2025-11-20 20:09:40] 2025-11-20 19:08:28,994 | INFO     | sum of square deviations: 1034021114047.211
[2025-11-20 20:09:40] 2025-11-20 19:08:29,063 | INFO     | sum of deviations: 2969300031138.355
[2025-11-20 20:09:40] 2025-11-20 19:08:29,063 | INFO     | mean x: 1763620007.7289157
[2025-11-20 20:09:40] 2025-11-20 19:08:29,064 | INFO     | mean y: 2896165.15394913
[2025-11-20 20:09:40] 2025-11-20 19:08:29,064 | INFO     | intersect: -5061523577.078316
[2025-11-20 20:09:40] 2025-11-20 19:08:29,065 | INFO     | chi2: 5.530553695828672
[2025-11-20 20:09:40] 2025-11-20 19:08:29,066 | INFO     | current chi2=5.530553695828672 (change=15.540593942230077 %)
[2025-11-20 20:09:40] 2025-11-20 19:08:29,066 | INFO     | left removable region: 40
[2025-11-20 20:09:40] 2025-11-20 19:08:29,068 | INFO     | sum of square deviations: 980971008176.2534
[2025-11-20 20:09:40] 2025-11-20 19:08:29,138 | INFO     | sum of deviations: 3293205038339.7905
[2025-11-20 20:09:40] 2025-11-20 19:08:29,139 | INFO     | mean x: 1763620434.7316077
[2025-11-20 20:09:40] 2025-11-20 19:08:29,139 | INFO     | mean y: 2909881.2329700273
[2025-11-20 20:09:40] 2025-11-20 19:08:29,139 | INFO     | intersect: -5917717388.042669
[2025-11-20 20:09:40] 2025-11-20 19:08:29,141 | INFO     | chi2: 1.4372524516287608
[2025-11-20 20:09:40] 2025-11-20 19:08:29,141 | INFO     | current memory leak: 3.36 B/s (using 1468 data points, chi2=1.44)
[2025-11-20 20:09:40] 2025-11-20 19:08:29,143 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | ..............................
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | . Timing measurements:
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | . get job = 0 s
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | . initial setup = 8 s
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | . payload setup = 168 s
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | . stage-in = 0 s
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | . payload execution = 92504 s
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | . stage-out = 5 s
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | . log creation = 2 s
[2025-11-20 20:09:40] 2025-11-20 19:08:29,144 | INFO     | ..............................
[2025-11-20 20:09:40] 2025-11-20 19:08:29,281 | INFO     | 
[2025-11-20 20:09:40] 2025-11-20 19:08:29,281 | INFO     | job summary report
[2025-11-20 20:09:40] 2025-11-20 19:08:29,281 | INFO     | --------------------------------------------------
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | PanDA job id: 6891558293
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | task id: 47493068
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | errors: (none)
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | pilot state: finished 
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | transexitcode: 0
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | exeerrorcode: 0
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | exeerrordiag: 
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | exitcode: 0
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | exitmsg: OK
[2025-11-20 20:09:40] 2025-11-20 19:08:29,282 | INFO     | cpuconsumptiontime: 341557 s
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | nevents: 1000
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | neventsw: 0
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | pid: 23125
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | pgrp: 23125
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | corecount: 8
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | event service: False
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | sizes: {0: 2296970, 1: 2297225, 12: 2297225, 23: 2297253, 34: 2297281, 44: 2297309, 55: 2297465, 66: 2297493, 76: 2297521, 87: 2297577, 95: 2297867, 98: 2298175, 9
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | --------------------------------------------------
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | 
[2025-11-20 20:09:40] 2025-11-20 19:08:29,283 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-20 20:09:40] 2025-11-20 19:08:29,313 | INFO     | time since job start (92981s) is within the limit (172800.0s)
[2025-11-20 20:09:40] 2025-11-20 19:08:29,606 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,606 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,606 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,606 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,607 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,608 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,608 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,608 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:09:40] 2025-11-20 19:08:29,608 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,608 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:09:40] 2025-11-20 19:08:29,608 | INFO     | job 6891558293 has completed (purged errors)
[2025-11-20 20:09:40] 2025-11-20 19:08:29,608 | INFO     | overall cleanup function is called
[2025-11-20 20:09:40] 2025-11-20 19:08:30,626 | INFO     | --- collectZombieJob: --- 10, [23125]
[2025-11-20 20:09:40] 2025-11-20 19:08:30,626 | INFO     | zombie collector waiting for pid 23125
[2025-11-20 20:09:40] 2025-11-20 19:08:30,627 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:09:40] 2025-11-20 19:08:30,627 | INFO     | collected zombie processes
[2025-11-20 20:09:40] 2025-11-20 19:08:30,627 | INFO     | will attempt to kill all subprocesses of pid=23125
[2025-11-20 20:09:40] 2025-11-20 19:08:30,754 | INFO     | process IDs to be killed: [23125] (in reverse order)
[2025-11-20 20:09:40] 2025-11-20 19:08:31,970 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:09:40] 2025-11-20 19:08:31,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:09:40] 2025-11-20 19:08:31,973 | INFO     | did not find any defunct processes belonging to 23125
[2025-11-20 20:09:40] 2025-11-20 19:08:31,976 | INFO     | did not find any defunct processes belonging to 23125
[2025-11-20 20:09:40] 2025-11-20 19:08:32,033 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:09:40] 2025-11-20 19:08:32,034 | INFO     | ready for new job
[2025-11-20 20:09:40] 2025-11-20 19:08:32,034 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:09:40] 2025-11-20 19:08:32,040 | INFO     | ***************************************
[2025-11-20 20:09:40] 2025-11-20 19:08:32,041 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:09:40] 2025-11-20 19:08:32,041 | INFO     | ***************************************
[2025-11-20 20:09:40] 2025-11-20 19:08:32,041 | INFO     | 
[2025-11-20 20:09:40] 2025-11-20 19:08:32,048 | INFO     | pilot is running in a VM
[2025-11-20 20:09:40] 2025-11-20 19:08:32,048 | INFO     | architecture information:
[2025-11-20 20:09:40] 2025-11-20 19:08:32,057 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:09:40] 2025-11-20 19:08:32,433 | INFO     | cat /etc/os-release:
[2025-11-20 20:09:40] NAME="CentOS Linux"
[2025-11-20 20:09:40] VERSION="7 (Core)"
[2025-11-20 20:09:40] ID="centos"
[2025-11-20 20:09:40] ID_LIKE="rhel fedora"
[2025-11-20 20:09:40] VERSION_ID="7"
[2025-11-20 20:09:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:09:40] ANSI_COLOR="0;31"
[2025-11-20 20:09:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:09:40] HOME_URL="https://www.centos.org/"
[2025-11-20 20:09:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:09:40] 
[2025-11-20 20:09:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:09:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:09:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:09:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:09:40] 
[2025-11-20 20:09:40] 2025-11-20 19:08:32,433 | INFO     | ***************************************
[2025-11-20 20:09:40] 2025-11-20 19:08:32,937 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-20 20:09:40] 2025-11-20 19:08:33,132 | INFO     | sufficient remaining disk space (494818820096 B)
[2025-11-20 20:09:40] 2025-11-20 19:08:33,132 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:09:40] 2025-11-20 19:08:33,132 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:09:40] 2025-11-20 19:08:33,132 | INFO     | update_server=False
[2025-11-20 20:09:40] 2025-11-20 19:08:33,133 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:09:40] 2025-11-20 19:08:33,139 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:09:40] 2025-11-20 19:08:33,252 | INFO     | all payload control threads have been joined
[2025-11-20 20:09:40] 2025-11-20 19:08:33,618 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 20:09:40] 2025-11-20 19:08:33,619 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 20:09:40] 2025-11-20 19:08:33,619 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:09:40] 2025-11-20 19:08:33,619 | INFO     | will abort loop
[2025-11-20 20:09:40] 2025-11-20 19:08:33,737 | INFO     | all data control threads have been joined
[2025-11-20 20:09:40] 2025-11-20 19:08:34,138 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:34,257 | INFO     | [payload] control thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:34,295 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:09:40] 2025-11-20 19:08:34,376 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:34,451 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:34,487 | INFO     | all job control threads have been joined
[2025-11-20 20:09:40] 2025-11-20 19:08:34,502 | INFO     | [job] validate thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:34,625 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:34,743 | INFO     | [data] control thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:34,752 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:35,123 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:35,145 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:35,260 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:35,301 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:35,474 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:35,493 | INFO     | [job] control thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:35,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:08:35,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:09:40] 2025-11-20 19:08:39,836 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:09:40] 2025-11-20 19:09:02,488 | INFO     | PID=16510 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:09:40] 2025-11-20 19:09:02,489 | INFO     | .. there are 9 such processes running
[2025-11-20 20:09:40] 2025-11-20 19:09:02,490 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:09:40] 2025-11-20 19:09:02,490 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:09:40] 2025-11-20 19:09:02,490 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:09:40] 2025-11-20 19:09:29,559 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:09:40] 2025-11-20 19:09:30,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140691422701376)>', '<ExcThread(monitor, started 140690847692544)>']
[2025-11-20 20:09:40] 2025-11-20 19:09:30,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:09:40] 2025-11-20 19:09:30,657 | INFO     | [monitor] control thread has ended
[2025-11-20 20:09:40] 2025-11-20 19:09:35,631 | INFO     | all workflow threads have been joined
[2025-11-20 20:09:40] 2025-11-20 19:09:35,632 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:09:40] 2025-11-20 19:09:35,632 | INFO     | traces error code: 0
[2025-11-20 20:09:40] 2025-11-20 19:09:35,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:09:40] 2025-11-20 19:09:36,014 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:09:40] 2025-11-20 19:09:36,075 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:09:40] 2025-11-20 19:09:36,186 [wrapper] pilotpid: 16510
[2025-11-20 20:09:40] 2025-11-20 19:09:36,309 [wrapper] Pilot exit status: 0
[2025-11-20 20:09:40] 2025-11-20 19:09:36,508 [wrapper] pandaids: 6891558293
[2025-11-20 20:09:40] 2025-11-20 19:09:37,508 [wrapper] cleanup supervisor_pilot 13585 16511
[2025-11-20 20:09:40] 2025-11-20 19:09:37,553 [wrapper] Test setup, not cleaning
[2025-11-20 20:09:40] 2025-11-20 19:09:37,640 [wrapper] apfmon messages muted
[2025-11-20 20:09:40] 2025-11-20 19:09:37,696 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:09:40] 2025-11-20 19:09:37,801 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:09:40]  *** Error codes and diagnostics ***
[2025-11-20 20:09:40]     "exeErrorCode": 0,
[2025-11-20 20:09:40]     "exeErrorDiag": "",
[2025-11-20 20:09:40]     "pilotErrorCode": 0,
[2025-11-20 20:09:40]     "pilotErrorDiag": "",
[2025-11-20 20:09:40]  *** Listing of results directory ***
[2025-11-20 20:09:40] total 1341184
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:09:40] -rwx------. 1 boinc boinc     36292 Nov 18 16:23 runpilot2-wrapper.sh
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:23 queuedata.json
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:09:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:14 run_atlas
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:14 job.xml
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc      6387 Nov 19 18:14 init_data.xml
[2025-11-20 20:09:40] -rw-r--r--. 2 boinc boinc 408581268 Nov 19 18:14 EVNT.47493065._000050.pool.root.1
[2025-11-20 20:09:40] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:14 start_atlas.sh
[2025-11-20 20:09:40] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:14 shared
[2025-11-20 20:09:40] -rw-r--r--. 2 boinc boinc    590093 Nov 19 18:14 input.tar.gz
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:14 boinc_lockfile
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc      2771 Nov 19 18:14 pandaJob.out
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc    989434 Nov 19 18:18 agis_schedconf.cvmfs.json
[2025-11-20 20:09:40] drwx------. 5 boinc boinc      4096 Nov 19 18:18 pilot3
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:53 boinc_task_state.xml
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc 930876994 Nov 20 20:05 HITS.47493068._000495.pool.root.1
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc      1033 Nov 20 20:06 memory_monitor_summary.json
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc   1526164 Nov 20 20:06 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc   2588346 Nov 20 20:06 log.47493068._000495.job.log.tgz.1
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc      8629 Nov 20 20:08 heartbeat.json
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc        95 Nov 20 20:09 pilot_heartbeat.json
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:09 boinc_mmap_file
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:09 wrapper_checkpoint.txt
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc      5071 Nov 20 20:09 pilotlog.txt
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc  12411301 Nov 20 20:09 log.47493068._000495.job.log.1
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc       353 Nov 20 20:09 output.list
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:09 runtime_log
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc  15022080 Nov 20 20:09 result.tar.gz
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc       662 Nov 20 20:09 VU8LDmTjcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsIFKDmChbQsm.diag
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc      8717 Nov 20 20:09 runtime_log.err
[2025-11-20 20:09:40] -rw-r--r--. 1 boinc boinc     20891 Nov 20 20:09 stderr.txt
[2025-11-20 20:09:40] HITS file was successfully produced:
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc 930876994 Nov 20 20:05 shared/HITS.pool.root.1
[2025-11-20 20:09:40]  *** Contents of shared directory: ***
[2025-11-20 20:09:40] total 1323336
[2025-11-20 20:09:40] -rw-r--r--. 2 boinc boinc 408581268 Nov 19 18:14 ATLAS.root_0
[2025-11-20 20:09:40] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:14 start_atlas.sh
[2025-11-20 20:09:40] -rw-r--r--. 2 boinc boinc    590093 Nov 19 18:14 input.tar.gz
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc 930876994 Nov 20 20:05 HITS.pool.root.1
[2025-11-20 20:09:40] -rw-------. 1 boinc boinc  15022080 Nov 20 20:09 result.tar.gz
20:09:42 (12697): run_atlas exited; CPU time 342169.204204
20:09:42 (12697): called boinc_finish(0)

</stderr_txt>
]]>

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