Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:27:33 (3400): wrapper (7.7.26015): starting
19:27:33 (3400): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 19:27:33] Arguments: --nthreads 8
[2025-11-20 19:27:33] Threads: 8
[2025-11-20 19:27:33] Checking for CVMFS
[2025-11-20 19:27:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 19:27:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 19:27:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 19:27:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 19:27:35] 2.11.2.0 3881 214305 146580 153088 2 308 20576177 25165824 4239 130560 2 113969549 99.919 39315695 2899 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 19:27:35] CVMFS is ok
[2025-11-20 19:27:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 19:27:35] Checking for apptainer binary...
[2025-11-20 19:27:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 19:27:35] Running /usr/bin/apptainer --version
[2025-11-20 19:27:36] apptainer version 1.3.2-1.el7
[2025-11-20 19:27:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 19:28:03] cg-vwn428.simple-grid.lan
[2025-11-20 19:28:03] apptainer works
[2025-11-20 19:28:03] Set ATHENA_PROC_NUMBER=8
[2025-11-20 19:28:03] Set ATHENA_CORE_NUMBER=8
[2025-11-20 19:28:03] Starting ATLAS job with PandaID=6891555883
[2025-11-20 19:28:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 21:05:23]  *** The last 200 lines of the pilot log: ***
[2025-11-21 21:05:23] 2025-11-21 20:04:27,378 | INFO     | time since job start (91974s) is within the limit (172800.0s)
[2025-11-21 21:05:23] 2025-11-21 20:04:28,810 | INFO     | monitor loop #6178: job 0:6891555883 is in state 'finished'
[2025-11-21 21:05:23] 2025-11-21 20:04:28,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:05:23] 2025-11-21 20:04:29,384 | INFO     | time since job start (91976s) is within the limit (172800.0s)
[2025-11-21 21:05:23] 2025-11-21 20:04:31,316 | INFO     | monitor loop #6179: job 0:6891555883 is in state 'finished'
[2025-11-21 21:05:23] 2025-11-21 20:04:31,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:05:23] 2025-11-21 20:04:31,393 | INFO     | time since job start (91978s) is within the limit (172800.0s)
[2025-11-21 21:05:23] 2025-11-21 20:04:33,400 | INFO     | time since job start (91980s) is within the limit (172800.0s)
[2025-11-21 21:05:23] 2025-11-21 20:04:33,822 | INFO     | monitor loop #6180: job 0:6891555883 is in state 'finished'
[2025-11-21 21:05:23] 2025-11-21 20:04:33,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:05:23] 2025-11-21 20:04:35,416 | INFO     | time since job start (91982s) is within the limit (172800.0s)
[2025-11-21 21:05:23] 2025-11-21 20:04:36,334 | INFO     | monitor loop #6181: job 0:6891555883 is in state 'finished'
[2025-11-21 21:05:23] 2025-11-21 20:04:36,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:05:23] 2025-11-21 20:04:37,423 | INFO     | time since job start (91984s) is within the limit (172800.0s)
[2025-11-21 21:05:23] 2025-11-21 20:04:38,743 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 21:05:23] 2025-11-21 20:04:38,744 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 21:05:23] 2025-11-21 20:04:38,746 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891555883/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 21:05:23] 2025-11-21 20:04:38,747 | INFO     | extracted standard info from prmon json
[2025-11-21 21:05:23] 2025-11-21 20:04:38,747 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 21:05:23] 2025-11-21 20:04:38,747 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 21:05:23] 2025-11-21 20:04:38,777 | INFO     | fitting pss+swap vs Time
[2025-11-21 21:05:23] 2025-11-21 20:04:38,780 | INFO     | sum of square deviations: 1042347720426.9237
[2025-11-21 21:05:23] 2025-11-21 20:04:38,846 | INFO     | sum of deviations: 1726054706773.2256
[2025-11-21 21:05:23] 2025-11-21 20:04:38,847 | INFO     | mean x: 1763709688.8324432
[2025-11-21 21:05:23] 2025-11-21 20:04:38,847 | INFO     | mean y: 2879712.666221629
[2025-11-21 21:05:23] 2025-11-21 20:04:38,847 | INFO     | intersect: -2917699811.932264
[2025-11-21 21:05:23] 2025-11-21 20:04:38,849 | INFO     | chi2: 14.06574446663631
[2025-11-21 21:05:23] 2025-11-21 20:04:38,851 | INFO     | sum of square deviations: 1031945706245.5371
[2025-11-21 21:05:23] 2025-11-21 20:04:38,868 | INFO     | monitor loop #6182: job 0:6891555883 is in state 'finished'
[2025-11-21 21:05:23] 2025-11-21 20:04:38,868 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 21:05:23] 2025-11-21 20:04:38,959 | INFO     | sum of deviations: 2226792405050.4443
[2025-11-21 21:05:23] 2025-11-21 20:04:38,959 | INFO     | mean x: 1763709536.3369055
[2025-11-21 21:05:23] 2025-11-21 20:04:38,959 | INFO     | mean y: 2887052.2297387808
[2025-11-21 21:05:23] 2025-11-21 20:04:38,960 | INFO     | intersect: -3802947863.755258
[2025-11-21 21:05:23] 2025-11-21 20:04:38,962 | INFO     | chi2: 10.908232290723637
[2025-11-21 21:05:23] 2025-11-21 20:04:38,962 | INFO     | current chi2=10.908232290723637 (change=22.448240712763088 %)
[2025-11-21 21:05:23] 2025-11-21 20:04:38,962 | INFO     | right removable region: 1492
[2025-11-21 21:05:23] 2025-11-21 20:04:38,964 | INFO     | sum of square deviations: 1031944488685.5365
[2025-11-21 21:05:23] 2025-11-21 20:04:39,034 | INFO     | sum of deviations: 1243197947839.592
[2025-11-21 21:05:23] 2025-11-21 20:04:39,034 | INFO     | mean x: 1763709841.3369055
[2025-11-21 21:05:23] 2025-11-21 20:04:39,034 | INFO     | mean y: 2886788.014735432
[2025-11-21 21:05:23] 2025-11-21 20:04:39,034 | INFO     | intersect: -2121879107.2200563
[2025-11-21 21:05:23] 2025-11-21 20:04:39,036 | INFO     | chi2: 11.34060846152519
[2025-11-21 21:05:23] 2025-11-21 20:04:39,036 | INFO     | current chi2=11.34060846152519 (change=19.374274938486863 %)
[2025-11-21 21:05:23] 2025-11-21 20:04:39,037 | INFO     | left removable region: 10
[2025-11-21 21:05:23] 2025-11-21 20:04:39,039 | INFO     | sum of square deviations: 1009303496782.368
[2025-11-21 21:05:23] 2025-11-21 20:04:39,106 | INFO     | sum of deviations: 1732572002690.084
[2025-11-21 21:05:23] 2025-11-21 20:04:39,106 | INFO     | mean x: 1763709810.84278
[2025-11-21 21:05:23] 2025-11-21 20:04:39,107 | INFO     | mean y: 2897363.4939271254
[2025-11-21 21:05:23] 2025-11-21 20:04:39,107 | INFO     | intersect: -3024689728.8699512
[2025-11-21 21:05:23] 2025-11-21 20:04:39,109 | INFO     | chi2: 7.42662232339424
[2025-11-21 21:05:23] 2025-11-21 20:04:39,109 | INFO     | current memory leak: 1.72 B/s (using 1482 data points, chi2=7.43)
[2025-11-21 21:05:23] 2025-11-21 20:04:39,112 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-21 21:05:23] 2025-11-21 20:04:39,113 | INFO     | ..............................
[2025-11-21 21:05:23] 2025-11-21 20:04:39,113 | INFO     | . Timing measurements:
[2025-11-21 21:05:23] 2025-11-21 20:04:39,113 | INFO     | . get job = 0 s
[2025-11-21 21:05:23] 2025-11-21 20:04:39,113 | INFO     | . initial setup = 10 s
[2025-11-21 21:05:23] 2025-11-21 20:04:39,113 | INFO     | . payload setup = 167 s
[2025-11-21 21:05:23] 2025-11-21 20:04:39,113 | INFO     | . stage-in = 0 s
[2025-11-21 21:05:23] 2025-11-21 20:04:39,113 | INFO     | . payload execution = 91496 s
[2025-11-21 21:05:23] 2025-11-21 20:04:39,113 | INFO     | . stage-out = 5 s
[2025-11-21 21:05:23] 2025-11-21 20:04:39,113 | INFO     | . log creation = 2 s
[2025-11-21 21:05:23] 2025-11-21 20:04:39,114 | INFO     | ..............................
[2025-11-21 21:05:23] 2025-11-21 20:04:39,240 | INFO     | 
[2025-11-21 21:05:23] 2025-11-21 20:04:39,241 | INFO     | job summary report
[2025-11-21 21:05:23] 2025-11-21 20:04:39,241 | INFO     | --------------------------------------------------
[2025-11-21 21:05:23] 2025-11-21 20:04:39,241 | INFO     | PanDA job id: 6891555883
[2025-11-21 21:05:23] 2025-11-21 20:04:39,241 | INFO     | task id: 47493068
[2025-11-21 21:05:23] 2025-11-21 20:04:39,241 | INFO     | errors: (none)
[2025-11-21 21:05:23] 2025-11-21 20:04:39,241 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 21:05:23] 2025-11-21 20:04:39,241 | INFO     | pilot state: finished 
[2025-11-21 21:05:23] 2025-11-21 20:04:39,241 | INFO     | transexitcode: 0
[2025-11-21 21:05:23] 2025-11-21 20:04:39,241 | INFO     | exeerrorcode: 0
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | exeerrordiag: 
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | exitcode: 0
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | exitmsg: OK
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | cpuconsumptiontime: 339795 s
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | nevents: 1000
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | neventsw: 0
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | pid: 13763
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | pgrp: 13763
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | corecount: 8
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | event service: False
[2025-11-21 21:05:23] 2025-11-21 20:04:39,242 | INFO     | sizes: {0: 2298565, 1: 2298820, 12: 2298820, 23: 2298848, 34: 2298876, 44: 2298904, 55: 2299060, 66: 2299088, 77: 2299116, 87: 2299172, 98: 2299200, 104: 2299770, 
[2025-11-21 21:05:23] 2025-11-21 20:04:39,243 | INFO     | --------------------------------------------------
[2025-11-21 21:05:23] 2025-11-21 20:04:39,243 | INFO     | 
[2025-11-21 21:05:23] 2025-11-21 20:04:39,243 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-21 21:05:23] 2025-11-21 20:04:39,277 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,278 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,278 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,278 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,279 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 21:05:23] 2025-11-21 20:04:39,280 | INFO     | job 6891555883 has completed (purged errors)
[2025-11-21 21:05:23] 2025-11-21 20:04:39,280 | INFO     | overall cleanup function is called
[2025-11-21 21:05:23] 2025-11-21 20:04:40,299 | INFO     | --- collectZombieJob: --- 10, [13763]
[2025-11-21 21:05:23] 2025-11-21 20:04:40,299 | INFO     | zombie collector waiting for pid 13763
[2025-11-21 21:05:23] 2025-11-21 20:04:40,299 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 21:05:23] 2025-11-21 20:04:40,299 | INFO     | collected zombie processes
[2025-11-21 21:05:23] 2025-11-21 20:04:40,300 | INFO     | will attempt to kill all subprocesses of pid=13763
[2025-11-21 21:05:23] 2025-11-21 20:04:40,414 | INFO     | process IDs to be killed: [13763] (in reverse order)
[2025-11-21 21:05:23] 2025-11-21 20:04:41,238 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 21:05:23] 2025-11-21 20:04:41,238 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 21:05:23] 2025-11-21 20:04:41,242 | INFO     | did not find any defunct processes belonging to 13763
[2025-11-21 21:05:23] 2025-11-21 20:04:41,245 | INFO     | did not find any defunct processes belonging to 13763
[2025-11-21 21:05:23] 2025-11-21 20:04:41,248 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 21:05:23] 2025-11-21 20:04:41,248 | INFO     | ready for new job
[2025-11-21 21:05:23] 2025-11-21 20:04:41,248 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 21:05:23] 2025-11-21 20:04:41,255 | INFO     | ***************************************
[2025-11-21 21:05:23] 2025-11-21 20:04:41,256 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 21:05:23] 2025-11-21 20:04:41,256 | INFO     | ***************************************
[2025-11-21 21:05:23] 2025-11-21 20:04:41,256 | INFO     | 
[2025-11-21 21:05:23] 2025-11-21 20:04:41,256 | INFO     | pilot is running in a VM
[2025-11-21 21:05:23] 2025-11-21 20:04:41,256 | INFO     | architecture information:
[2025-11-21 21:05:23] 2025-11-21 20:04:41,257 | INFO     | executing command: cat /etc/os-release
[2025-11-21 21:05:23] 2025-11-21 20:04:41,371 | INFO     | cat /etc/os-release:
[2025-11-21 21:05:23] NAME="CentOS Linux"
[2025-11-21 21:05:23] VERSION="7 (Core)"
[2025-11-21 21:05:23] ID="centos"
[2025-11-21 21:05:23] ID_LIKE="rhel fedora"
[2025-11-21 21:05:23] VERSION_ID="7"
[2025-11-21 21:05:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 21:05:23] ANSI_COLOR="0;31"
[2025-11-21 21:05:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 21:05:23] HOME_URL="https://www.centos.org/"
[2025-11-21 21:05:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 21:05:23] 
[2025-11-21 21:05:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 21:05:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 21:05:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 21:05:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 21:05:23] 
[2025-11-21 21:05:23] 2025-11-21 20:04:41,371 | INFO     | ***************************************
[2025-11-21 21:05:23] 2025-11-21 20:04:41,875 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-21 21:05:23] 2025-11-21 20:04:42,035 | INFO     | sufficient remaining disk space (494755905536 B)
[2025-11-21 21:05:23] 2025-11-21 20:04:42,035 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 21:05:23] 2025-11-21 20:04:42,036 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 21:05:23] 2025-11-21 20:04:42,036 | INFO     | update_server=False
[2025-11-21 21:05:23] 2025-11-21 20:04:42,036 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 21:05:23] 2025-11-21 20:04:42,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 21:05:23] 2025-11-21 20:04:42,299 | INFO     | all data control threads have been joined
[2025-11-21 21:05:23] 2025-11-21 20:04:42,378 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:05:23] 2025-11-21 20:04:42,378 | INFO     | aborting loop
[2025-11-21 21:05:23] 2025-11-21 20:04:42,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 21:05:23] 2025-11-21 20:04:42,885 | INFO     | all payload control threads have been joined
[2025-11-21 21:05:23] 2025-11-21 20:04:43,043 | INFO     | [job] retrieve thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:43,305 | INFO     | [data] control thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:43,344 | INFO     | [job] validate thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:43,384 | INFO     | [job] job monitor thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:43,421 | INFO     | all job control threads have been joined
[2025-11-21 21:05:23] 2025-11-21 20:04:43,550 | INFO     | [payload] failed_post thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:43,608 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:43,825 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:43,843 | INFO     | [payload] validate_post thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:43,890 | INFO     | [payload] control thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:43,932 | INFO     | [data] copytool_in thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:44,117 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:44,155 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:44,177 | INFO     | [data] copytool_out thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:44,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 21:05:23] 2025-11-21 20:04:44,428 | INFO     | [job] control thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:45,260 | INFO     | [job] queue monitor thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:04:46,516 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 21:05:23] 2025-11-21 20:05:10,598 | INFO     | PID=7199 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 21:05:23] 2025-11-21 20:05:10,598 | INFO     | .. there are 9 such processes running
[2025-11-21 21:05:23] 2025-11-21 20:05:10,598 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 21:05:23] 2025-11-21 20:05:10,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 21:05:23] 2025-11-21 20:05:10,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 21:05:23] 2025-11-21 20:05:13,737 | INFO     | [monitor] cgroup control has ended
[2025-11-21 21:05:23] 2025-11-21 20:05:14,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139630243120960)>', '<ExcThread(monitor, started 139629512615680)>']
[2025-11-21 21:05:23] 2025-11-21 20:05:14,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 21:05:23] 2025-11-21 20:05:14,622 | INFO     | [monitor] control thread has ended
[2025-11-21 21:05:23] 2025-11-21 20:05:19,119 | INFO     | all workflow threads have been joined
[2025-11-21 21:05:23] 2025-11-21 20:05:19,119 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 21:05:23] 2025-11-21 20:05:19,119 | INFO     | traces error code: 0
[2025-11-21 21:05:23] 2025-11-21 20:05:19,120 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 21:05:23] 2025-11-21 20:05:19,527 [wrapper] ==== pilot stdout END ====
[2025-11-21 21:05:23] 2025-11-21 20:05:19,638 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 21:05:23] 2025-11-21 20:05:19,753 [wrapper] pilotpid: 7199
[2025-11-21 21:05:23] 2025-11-21 20:05:19,864 [wrapper] Pilot exit status: 0
[2025-11-21 21:05:23] 2025-11-21 20:05:20,293 [wrapper] pandaids: 6891555883
[2025-11-21 21:05:23] 2025-11-21 20:05:21,248 [wrapper] cleanup supervisor_pilot 13117 7200
[2025-11-21 21:05:23] 2025-11-21 20:05:21,294 [wrapper] Test setup, not cleaning
[2025-11-21 21:05:23] 2025-11-21 20:05:21,361 [wrapper] apfmon messages muted
[2025-11-21 21:05:23] 2025-11-21 20:05:21,445 [wrapper] ==== wrapper stdout END ====
[2025-11-21 21:05:23] 2025-11-21 20:05:21,515 [wrapper] ==== wrapper stderr END ====
[2025-11-21 21:05:23]  *** Error codes and diagnostics ***
[2025-11-21 21:05:23]     "exeErrorCode": 0,
[2025-11-21 21:05:23]     "exeErrorDiag": "",
[2025-11-21 21:05:23]     "pilotErrorCode": 0,
[2025-11-21 21:05:23]     "pilotErrorDiag": "",
[2025-11-21 21:05:23]  *** Listing of results directory ***
[2025-11-21 21:05:23] total 1318176
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:20 queuedata.json
[2025-11-21 21:05:23] -rwx------. 1 boinc boinc     36292 Nov 18 16:21 runpilot2-wrapper.sh
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc       100 Nov 20 19:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 21:05:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 19:27 run_atlas
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc       105 Nov 20 19:27 job.xml
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc      6391 Nov 20 19:27 init_data.xml
[2025-11-21 21:05:23] -rw-r--r--. 2 boinc boinc 409690096 Nov 20 19:27 EVNT.47493065._000043.pool.root.1
[2025-11-21 21:05:23] -rw-r--r--. 2 boinc boinc     15120 Nov 20 19:27 start_atlas.sh
[2025-11-21 21:05:23] drwxrwx--x. 2 boinc boinc        68 Nov 20 19:27 shared
[2025-11-21 21:05:23] -rw-r--r--. 2 boinc boinc    590103 Nov 20 19:27 input.tar.gz
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc         0 Nov 20 19:27 boinc_lockfile
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc      2771 Nov 20 19:28 pandaJob.out
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc    989440 Nov 20 19:31 agis_schedconf.cvmfs.json
[2025-11-21 21:05:23] drwx------. 5 boinc boinc      4096 Nov 20 19:31 pilot3
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc       533 Nov 21 20:39 boinc_task_state.xml
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc 906680831 Nov 21 21:01 HITS.47493068._000426.pool.root.1
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc      1033 Nov 21 21:02 memory_monitor_summary.json
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc   1526164 Nov 21 21:02 agis_ddmendpoints.agis.ALL.json
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc   2561520 Nov 21 21:02 log.47493068._000426.job.log.tgz.1
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc        95 Nov 21 21:04 pilot_heartbeat.json
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc      8627 Nov 21 21:04 heartbeat.json
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc      8192 Nov 21 21:05 boinc_mmap_file
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc        29 Nov 21 21:05 wrapper_checkpoint.txt
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc      4883 Nov 21 21:05 pilotlog.txt
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc  12204429 Nov 21 21:05 log.47493068._000426.job.log.1
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc       353 Nov 21 21:05 output.list
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc       620 Nov 21 21:05 runtime_log
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc  14786560 Nov 21 21:05 result.tar.gz
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc      8703 Nov 21 21:05 runtime_log.err
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc       662 Nov 21 21:05 Hp8KDmUhcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0BFKDmYIaSHn.diag
[2025-11-21 21:05:23] -rw-r--r--. 1 boinc boinc     21439 Nov 21 21:05 stderr.txt
[2025-11-21 21:05:23] HITS file was successfully produced:
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc 906680831 Nov 21 21:01 shared/HITS.pool.root.1
[2025-11-21 21:05:23]  *** Contents of shared directory: ***
[2025-11-21 21:05:23] total 1300556
[2025-11-21 21:05:23] -rw-r--r--. 2 boinc boinc 409690096 Nov 20 19:27 ATLAS.root_0
[2025-11-21 21:05:23] -rw-r--r--. 2 boinc boinc     15120 Nov 20 19:27 start_atlas.sh
[2025-11-21 21:05:23] -rw-r--r--. 2 boinc boinc    590103 Nov 20 19:27 input.tar.gz
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc 906680831 Nov 21 21:01 HITS.pool.root.1
[2025-11-21 21:05:23] -rw-------. 1 boinc boinc  14786560 Nov 21 21:05 result.tar.gz
21:05:24 (3400): run_atlas exited; CPU time 340333.742238
21:05:24 (3400): called boinc_finish(0)

</stderr_txt>
]]>

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