Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:22:23 (7710): wrapper (7.7.26015): starting
18:22:23 (7710): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:22:23] Arguments: --nthreads 8
[2025-11-19 18:22:23] Threads: 8
[2025-11-19 18:22:23] Checking for CVMFS
[2025-11-19 18:22:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:22:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:22:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:22:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:22:26] 2.11.2.0 31978 275534 143964 153052 3 84 15961332 25165825 4251 130560 2 127006602 99.874 72759041 3023 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 18:22:26] CVMFS is ok
[2025-11-19 18:22:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:22:26] Checking for apptainer binary...
[2025-11-19 18:22:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:22:26] Running /usr/bin/apptainer --version
[2025-11-19 18:22:26] apptainer version 1.3.2-1.el7
[2025-11-19 18:22:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:22:38] cg-vwn266.simple-grid.lan
[2025-11-19 18:22:38] apptainer works
[2025-11-19 18:22:38] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:22:38] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:22:38] Starting ATLAS job with PandaID=6891555511
[2025-11-19 18:22:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:16:53]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:16:53] 2025-11-20 19:16:07,899 | INFO     | time since job start (92964s) is within the limit (172800.0s)
[2025-11-20 20:16:53] 2025-11-20 19:16:08,925 | INFO     | monitor loop #6253: job 0:6891555511 is in state 'finished'
[2025-11-20 20:16:53] 2025-11-20 19:16:08,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:16:53] 2025-11-20 19:16:09,162 | INFO     | PID=11516 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:16:53] 2025-11-20 19:16:09,162 | INFO     | .. there are 9 such processes running
[2025-11-20 20:16:53] 2025-11-20 19:16:10,163 | INFO     | time since job start (92967s) is within the limit (172800.0s)
[2025-11-20 20:16:53] 2025-11-20 19:16:11,431 | INFO     | monitor loop #6254: job 0:6891555511 is in state 'finished'
[2025-11-20 20:16:53] 2025-11-20 19:16:11,431 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:16:53] 2025-11-20 19:16:12,171 | INFO     | time since job start (92969s) is within the limit (172800.0s)
[2025-11-20 20:16:53] 2025-11-20 19:16:13,939 | INFO     | monitor loop #6255: job 0:6891555511 is in state 'finished'
[2025-11-20 20:16:53] 2025-11-20 19:16:13,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:16:53] 2025-11-20 19:16:14,179 | INFO     | time since job start (92971s) is within the limit (172800.0s)
[2025-11-20 20:16:53] 2025-11-20 19:16:16,186 | INFO     | time since job start (92973s) is within the limit (172800.0s)
[2025-11-20 20:16:53] 2025-11-20 19:16:16,453 | INFO     | monitor loop #6256: job 0:6891555511 is in state 'finished'
[2025-11-20 20:16:53] 2025-11-20 19:16:16,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:16:53] 2025-11-20 19:16:16,708 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 20:16:53] 2025-11-20 19:16:16,709 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 20:16:53] 2025-11-20 19:16:16,711 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6891555511/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 20:16:53] 2025-11-20 19:16:16,712 | INFO     | extracted standard info from prmon json
[2025-11-20 20:16:53] 2025-11-20 19:16:16,712 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 20:16:53] 2025-11-20 19:16:16,712 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 20:16:53] 2025-11-20 19:16:16,743 | INFO     | fitting pss+swap vs Time
[2025-11-20 20:16:53] 2025-11-20 19:16:16,746 | INFO     | sum of square deviations: 1076109209606.5592
[2025-11-20 20:16:53] 2025-11-20 19:16:16,812 | INFO     | sum of deviations: 4705699178809.265
[2025-11-20 20:16:53] 2025-11-20 19:16:16,813 | INFO     | mean x: 1763619899.8229854
[2025-11-20 20:16:53] 2025-11-20 19:16:16,813 | INFO     | mean y: 2851960.6875825627
[2025-11-20 20:16:53] 2025-11-20 19:16:16,813 | INFO     | intersect: -7709250714.618909
[2025-11-20 20:16:53] 2025-11-20 19:16:16,815 | INFO     | chi2: 20.22531894587042
[2025-11-20 20:16:53] 2025-11-20 19:16:16,818 | INFO     | sum of square deviations: 1065483416620.2787
[2025-11-20 20:16:53] 2025-11-20 19:16:16,884 | INFO     | sum of deviations: 5205143257511.532
[2025-11-20 20:16:53] 2025-11-20 19:16:16,884 | INFO     | mean x: 1763619747.3273692
[2025-11-20 20:16:53] 2025-11-20 19:16:16,885 | INFO     | mean y: 2859127.1345261764
[2025-11-20 20:16:53] 2025-11-20 19:16:16,885 | INFO     | intersect: -8612848347.44442
[2025-11-20 20:16:53] 2025-11-20 19:16:16,886 | INFO     | chi2: 17.176987180417488
[2025-11-20 20:16:53] 2025-11-20 19:16:16,887 | INFO     | current chi2=17.176987180417488 (change=15.071860046366966 %)
[2025-11-20 20:16:53] 2025-11-20 19:16:16,887 | INFO     | right removable region: 1508
[2025-11-20 20:16:53] 2025-11-20 19:16:16,889 | INFO     | sum of square deviations: 1065482194790.2806
[2025-11-20 20:16:53] 2025-11-20 19:16:16,985 | INFO     | sum of deviations: 4059203156022.2783
[2025-11-20 20:16:53] 2025-11-20 19:16:16,986 | INFO     | mean x: 1763620052.3273692
[2025-11-20 20:16:53] 2025-11-20 19:16:16,986 | INFO     | mean y: 2861237.956925116
[2025-11-20 20:16:53] 2025-11-20 19:16:16,986 | INFO     | intersect: -6716061065.423771
[2025-11-20 20:16:53] 2025-11-20 19:16:16,988 | INFO     | chi2: 15.264886229014117
[2025-11-20 20:16:53] 2025-11-20 19:16:16,988 | INFO     | current chi2=15.264886229014117 (change=24.525856576759292 %)
[2025-11-20 20:16:53] 2025-11-20 19:16:16,988 | INFO     | left removable region: 10
[2025-11-20 20:16:53] 2025-11-20 19:16:16,990 | INFO     | sum of square deviations: 1042350960458.2571
[2025-11-20 20:16:53] 2025-11-20 19:16:17,052 | INFO     | sum of deviations: 4096918191159.495
[2025-11-20 20:16:53] 2025-11-20 19:16:17,053 | INFO     | mean x: 1763620021.8371162
[2025-11-20 20:16:53] 2025-11-20 19:16:17,053 | INFO     | mean y: 2878303.38317757
[2025-11-20 20:16:53] 2025-11-20 19:16:17,053 | INFO     | intersect: -6928958691.884735
[2025-11-20 20:16:53] 2025-11-20 19:16:17,055 | INFO     | chi2: 7.738901504616782
[2025-11-20 20:16:53] 2025-11-20 19:16:17,055 | INFO     | current memory leak: 3.93 B/s (using 1498 data points, chi2=7.74)
[2025-11-20 20:16:53] 2025-11-20 19:16:17,058 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 20:16:53] 2025-11-20 19:16:17,058 | INFO     | ..............................
[2025-11-20 20:16:53] 2025-11-20 19:16:17,058 | INFO     | . Timing measurements:
[2025-11-20 20:16:53] 2025-11-20 19:16:17,058 | INFO     | . get job = 0 s
[2025-11-20 20:16:53] 2025-11-20 19:16:17,058 | INFO     | . initial setup = 14 s
[2025-11-20 20:16:53] 2025-11-20 19:16:17,059 | INFO     | . payload setup = 175 s
[2025-11-20 20:16:53] 2025-11-20 19:16:17,059 | INFO     | . stage-in = 0 s
[2025-11-20 20:16:53] 2025-11-20 19:16:17,059 | INFO     | . payload execution = 92474 s
[2025-11-20 20:16:53] 2025-11-20 19:16:17,059 | INFO     | . stage-out = 8 s
[2025-11-20 20:16:53] 2025-11-20 19:16:17,059 | INFO     | . log creation = 2 s
[2025-11-20 20:16:53] 2025-11-20 19:16:17,059 | INFO     | ..............................
[2025-11-20 20:16:53] 2025-11-20 19:16:17,189 | INFO     | 
[2025-11-20 20:16:53] 2025-11-20 19:16:17,189 | INFO     | job summary report
[2025-11-20 20:16:53] 2025-11-20 19:16:17,190 | INFO     | --------------------------------------------------
[2025-11-20 20:16:53] 2025-11-20 19:16:17,190 | INFO     | PanDA job id: 6891555511
[2025-11-20 20:16:53] 2025-11-20 19:16:17,190 | INFO     | task id: 47493068
[2025-11-20 20:16:53] 2025-11-20 19:16:17,190 | INFO     | errors: (none)
[2025-11-20 20:16:53] 2025-11-20 19:16:17,190 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:16:53] 2025-11-20 19:16:17,190 | INFO     | pilot state: finished 
[2025-11-20 20:16:53] 2025-11-20 19:16:17,190 | INFO     | transexitcode: 0
[2025-11-20 20:16:53] 2025-11-20 19:16:17,190 | INFO     | exeerrorcode: 0
[2025-11-20 20:16:53] 2025-11-20 19:16:17,190 | INFO     | exeerrordiag: 
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | exitcode: 0
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | exitmsg: OK
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | cpuconsumptiontime: 340892 s
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | nevents: 1000
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | neventsw: 0
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | pid: 18122
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | pgrp: 18122
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | corecount: 8
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | event service: False
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | sizes: {0: 2296368, 1: 2297053, 2: 2297252, 13: 2297252, 24: 2297308, 35: 2297336, 45: 2297492, 56: 2297520, 67: 2297548, 78: 2297576, 88: 2297632, 99: 2297940, 11
[2025-11-20 20:16:53] 2025-11-20 19:16:17,191 | INFO     | --------------------------------------------------
[2025-11-20 20:16:53] 2025-11-20 19:16:17,192 | INFO     | 
[2025-11-20 20:16:53] 2025-11-20 19:16:17,192 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-20 20:16:53] 2025-11-20 19:16:17,233 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,233 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,233 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,234 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,234 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,234 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,234 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,234 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,234 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,234 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,234 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,235 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,235 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,235 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,235 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,235 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:16:53] 2025-11-20 19:16:17,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,236 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:16:53] 2025-11-20 19:16:17,236 | INFO     | job 6891555511 has completed (purged errors)
[2025-11-20 20:16:53] 2025-11-20 19:16:17,236 | INFO     | overall cleanup function is called
[2025-11-20 20:16:53] 2025-11-20 19:16:18,256 | INFO     | --- collectZombieJob: --- 10, [18122]
[2025-11-20 20:16:53] 2025-11-20 19:16:18,256 | INFO     | zombie collector waiting for pid 18122
[2025-11-20 20:16:53] 2025-11-20 19:16:18,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:16:53] 2025-11-20 19:16:18,257 | INFO     | collected zombie processes
[2025-11-20 20:16:53] 2025-11-20 19:16:18,257 | INFO     | will attempt to kill all subprocesses of pid=18122
[2025-11-20 20:16:53] 2025-11-20 19:16:18,390 | INFO     | process IDs to be killed: [18122] (in reverse order)
[2025-11-20 20:16:53] 2025-11-20 19:16:18,766 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:16:53] 2025-11-20 19:16:18,766 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:16:53] 2025-11-20 19:16:18,770 | INFO     | did not find any defunct processes belonging to 18122
[2025-11-20 20:16:53] 2025-11-20 19:16:18,774 | INFO     | did not find any defunct processes belonging to 18122
[2025-11-20 20:16:53] 2025-11-20 19:16:18,814 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:16:53] 2025-11-20 19:16:18,815 | INFO     | ready for new job
[2025-11-20 20:16:53] 2025-11-20 19:16:18,815 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:16:53] 2025-11-20 19:16:18,822 | INFO     | ***************************************
[2025-11-20 20:16:53] 2025-11-20 19:16:18,823 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:16:53] 2025-11-20 19:16:18,823 | INFO     | ***************************************
[2025-11-20 20:16:53] 2025-11-20 19:16:18,823 | INFO     | 
[2025-11-20 20:16:53] 2025-11-20 19:16:18,824 | INFO     | pilot is running in a VM
[2025-11-20 20:16:53] 2025-11-20 19:16:18,824 | INFO     | architecture information:
[2025-11-20 20:16:53] 2025-11-20 19:16:18,825 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:16:53] 2025-11-20 19:16:18,967 | INFO     | cat /etc/os-release:
[2025-11-20 20:16:53] NAME="CentOS Linux"
[2025-11-20 20:16:53] VERSION="7 (Core)"
[2025-11-20 20:16:53] ID="centos"
[2025-11-20 20:16:53] ID_LIKE="rhel fedora"
[2025-11-20 20:16:53] VERSION_ID="7"
[2025-11-20 20:16:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:16:53] ANSI_COLOR="0;31"
[2025-11-20 20:16:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:16:53] HOME_URL="https://www.centos.org/"
[2025-11-20 20:16:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:16:53] 
[2025-11-20 20:16:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:16:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:16:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:16:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:16:53] 
[2025-11-20 20:16:53] 2025-11-20 19:16:18,968 | INFO     | ***************************************
[2025-11-20 20:16:53] 2025-11-20 19:16:19,470 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-20 20:16:53] 2025-11-20 19:16:19,808 | INFO     | sufficient remaining disk space (494783168512 B)
[2025-11-20 20:16:53] 2025-11-20 19:16:19,809 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:16:53] 2025-11-20 19:16:19,809 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:16:53] 2025-11-20 19:16:19,809 | INFO     | update_server=False
[2025-11-20 20:16:53] 2025-11-20 19:16:19,809 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:16:53] 2025-11-20 19:16:19,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:16:53] 2025-11-20 19:16:19,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:16:53] 2025-11-20 19:16:19,965 | INFO     | aborting loop
[2025-11-20 20:16:53] 2025-11-20 19:16:19,982 | INFO     | all payload control threads have been joined
[2025-11-20 20:16:53] 2025-11-20 19:16:19,992 | INFO     | all job control threads have been joined
[2025-11-20 20:16:53] 2025-11-20 19:16:20,720 | INFO     | all data control threads have been joined
[2025-11-20 20:16:53] 2025-11-20 19:16:20,815 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:20,941 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:20,969 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:20,988 | INFO     | [payload] control thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:20,998 | INFO     | [job] control thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:21,039 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:21,096 | INFO     | [job] validate thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:21,107 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:21,238 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:21,465 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:16:53] 2025-11-20 19:16:21,726 | INFO     | [data] control thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:21,817 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:21,960 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:22,084 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:22,150 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:22,206 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:16:53] 2025-11-20 19:16:23,212 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:25,226 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:16:53] 2025-11-20 19:16:25,474 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:16:53] 2025-11-20 19:16:25,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280177522496)>', '<ExcThread(monitor, started 140279453570816)>']
[2025-11-20 20:16:53] 2025-11-20 19:16:30,804 | INFO     | all workflow threads have been joined
[2025-11-20 20:16:53] 2025-11-20 19:16:30,804 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:16:53] 2025-11-20 19:16:30,805 | INFO     | traces error code: 0
[2025-11-20 20:16:53] 2025-11-20 19:16:30,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:16:53] 2025-11-20 19:16:48,273 | INFO     | 92989s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 20:16:53] 2025-11-20 19:16:49,429 | INFO     | PID=11516 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 20:16:53] 2025-11-20 19:16:49,429 | INFO     | .. there are 9 such processes running
[2025-11-20 20:16:53] 2025-11-20 19:16:49,430 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:16:53] 2025-11-20 19:16:49,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:16:53] 2025-11-20 19:16:49,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:16:53] 2025-11-20 19:16:49,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:16:53] 2025-11-20 19:16:49,430 | INFO     | [monitor] control thread has ended
[2025-11-20 20:16:53] 2025-11-20 19:16:49,714 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:16:53] 2025-11-20 19:16:49,742 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:16:53] 2025-11-20 19:16:49,748 [wrapper] pilotpid: 11516
[2025-11-20 20:16:53] 2025-11-20 19:16:49,752 [wrapper] Pilot exit status: 0
[2025-11-20 20:16:53] 2025-11-20 19:16:50,094 [wrapper] pandaids: 6891555511
[2025-11-20 20:16:53] 2025-11-20 19:16:50,791 [wrapper] cleanup supervisor_pilot  5944 11517
[2025-11-20 20:16:53] 2025-11-20 19:16:50,849 [wrapper] Test setup, not cleaning
[2025-11-20 20:16:53] 2025-11-20 19:16:50,933 [wrapper] apfmon messages muted
[2025-11-20 20:16:53] 2025-11-20 19:16:50,984 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:16:53] 2025-11-20 19:16:51,078 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:16:53]  *** Error codes and diagnostics ***
[2025-11-20 20:16:53]     "exeErrorCode": 0,
[2025-11-20 20:16:53]     "exeErrorDiag": "",
[2025-11-20 20:16:53]     "pilotErrorCode": 0,
[2025-11-20 20:16:53]     "pilotErrorDiag": "",
[2025-11-20 20:16:53]  *** Listing of results directory ***
[2025-11-20 20:16:53] total 1332504
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:20 queuedata.json
[2025-11-20 20:16:53] -rwx------. 1 boinc boinc     36292 Nov 18 16:20 runpilot2-wrapper.sh
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc       100 Nov 19 18:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:16:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 18:22 run_atlas
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc       105 Nov 19 18:22 job.xml
[2025-11-20 20:16:53] -rw-r--r--. 2 boinc boinc 411213988 Nov 19 18:22 EVNT.47493065._000029.pool.root.1
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc      6390 Nov 19 18:22 init_data.xml
[2025-11-20 20:16:53] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:22 start_atlas.sh
[2025-11-20 20:16:53] drwxrwx--x. 2 boinc boinc        68 Nov 19 18:22 shared
[2025-11-20 20:16:53] -rw-r--r--. 2 boinc boinc    590095 Nov 19 18:22 input.tar.gz
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc         0 Nov 19 18:22 boinc_lockfile
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc      2771 Nov 19 18:22 pandaJob.out
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc    989434 Nov 19 18:26 agis_schedconf.cvmfs.json
[2025-11-20 20:16:53] drwx------. 5 boinc boinc      4096 Nov 19 18:26 pilot3
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:55 boinc_task_state.xml
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc 919416826 Nov 20 20:13 HITS.47493068._000282.pool.root.1
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc      1035 Nov 20 20:14 memory_monitor_summary.json
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc   1526164 Nov 20 20:14 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc   2583110 Nov 20 20:14 log.47493068._000282.job.log.tgz.1
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc      8625 Nov 20 20:16 heartbeat.json
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc      8192 Nov 20 20:16 boinc_mmap_file
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc        29 Nov 20 20:16 wrapper_checkpoint.txt
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc        95 Nov 20 20:16 pilot_heartbeat.json
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc       936 Nov 20 20:16 pilotlog.txt
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc  12392301 Nov 20 20:16 log.47493068._000282.job.log.1
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc       353 Nov 20 20:16 output.list
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc       620 Nov 20 20:16 runtime_log
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc  14991360 Nov 20 20:16 result.tar.gz
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc      8703 Nov 20 20:16 runtime_log.err
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc       662 Nov 20 20:16 lgINDmYgcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjHFKDm5saHxn.diag
[2025-11-20 20:16:53] -rw-r--r--. 1 boinc boinc     21521 Nov 20 20:16 stderr.txt
[2025-11-20 20:16:53] HITS file was successfully produced:
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc 919416826 Nov 20 20:13 shared/HITS.pool.root.1
[2025-11-20 20:16:53]  *** Contents of shared directory: ***
[2025-11-20 20:16:53] total 1314684
[2025-11-20 20:16:53] -rw-r--r--. 2 boinc boinc 411213988 Nov 19 18:22 ATLAS.root_0
[2025-11-20 20:16:53] -rw-r--r--. 2 boinc boinc     15120 Nov 19 18:22 start_atlas.sh
[2025-11-20 20:16:53] -rw-r--r--. 2 boinc boinc    590095 Nov 19 18:22 input.tar.gz
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc 919416826 Nov 20 20:13 HITS.pool.root.1
[2025-11-20 20:16:53] -rw-------. 1 boinc boinc  14991360 Nov 20 20:16 result.tar.gz
20:16:54 (7710): run_atlas exited; CPU time 341442.662021
20:16:54 (7710): called boinc_finish(0)

</stderr_txt>
]]>

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