Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:41:55 (18186): wrapper (7.7.26015): starting
17:41:55 (18186): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 17:41:55] Arguments: --nthreads 8
[2025-11-19 17:41:55] Threads: 8
[2025-11-19 17:41:55] Checking for CVMFS
[2025-11-19 17:41:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 17:41:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 17:41:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 17:41:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 17:41:58] 2.11.2.0 7908 77830 93904 153051 3 85 17666704 25165825 4632 130560 3 22498641 99.890 12202962 2002 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 17:41:58] CVMFS is ok
[2025-11-19 17:41:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 17:41:58] Checking for apptainer binary...
[2025-11-19 17:41:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 17:41:58] Running /usr/bin/apptainer --version
[2025-11-19 17:41:58] apptainer version 1.3.2-1.el7
[2025-11-19 17:41:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 17:42:31] cg-vwn301.simple-grid.lan
[2025-11-19 17:42:31] apptainer works
[2025-11-19 17:42:31] Set ATHENA_PROC_NUMBER=8
[2025-11-19 17:42:31] Set ATHENA_CORE_NUMBER=8
[2025-11-19 17:42:31] Starting ATLAS job with PandaID=6891558369
[2025-11-19 17:42:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:46:54]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:46:54] 2025-11-20 18:45:43,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:46:54] 2025-11-20 18:45:44,256 | INFO     | time since job start (93582s) is within the limit (172800.0s)
[2025-11-20 19:46:54] 2025-11-20 18:45:46,059 | INFO     | monitor loop #6241: job 0:6891558369 is in state 'finished'
[2025-11-20 19:46:54] 2025-11-20 18:45:46,059 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:46:54] 2025-11-20 18:45:46,262 | INFO     | time since job start (93584s) is within the limit (172800.0s)
[2025-11-20 19:46:54] 2025-11-20 18:45:48,273 | INFO     | time since job start (93586s) is within the limit (172800.0s)
[2025-11-20 19:46:54] 2025-11-20 18:45:48,564 | INFO     | monitor loop #6242: job 0:6891558369 is in state 'finished'
[2025-11-20 19:46:54] 2025-11-20 18:45:48,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:46:54] 2025-11-20 18:45:50,282 | INFO     | time since job start (93588s) is within the limit (172800.0s)
[2025-11-20 19:46:54] 2025-11-20 18:45:51,080 | INFO     | monitor loop #6243: job 0:6891558369 is in state 'finished'
[2025-11-20 19:46:54] 2025-11-20 18:45:51,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:46:54] 2025-11-20 18:45:52,289 | INFO     | time since job start (93590s) is within the limit (172800.0s)
[2025-11-20 19:46:54] 2025-11-20 18:45:53,435 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 19:46:54] 2025-11-20 18:45:53,436 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-20 19:46:54] 2025-11-20 18:45:53,438 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891558369/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 19:46:54] 2025-11-20 18:45:53,439 | INFO     | extracted standard info from prmon json
[2025-11-20 19:46:54] 2025-11-20 18:45:53,439 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 19:46:54] 2025-11-20 18:45:53,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 19:46:54] 2025-11-20 18:45:53,473 | INFO     | fitting pss+swap vs Time
[2025-11-20 19:46:54] 2025-11-20 18:45:53,476 | INFO     | sum of square deviations: 1108409166763.2207
[2025-11-20 19:46:54] 2025-11-20 18:45:53,573 | INFO     | sum of deviations: 2695470140786.095
[2025-11-20 19:46:54] 2025-11-20 18:45:53,574 | INFO     | mean x: 1763617589.3322432
[2025-11-20 19:46:54] 2025-11-20 18:45:53,574 | INFO     | mean y: 2872916.6553302812
[2025-11-20 19:46:54] 2025-11-20 18:45:53,574 | INFO     | intersect: -4285957142.0965405
[2025-11-20 19:46:54] 2025-11-20 18:45:53,577 | INFO     | chi2: 15.546685246915482
[2025-11-20 19:46:54] 2025-11-20 18:45:53,579 | INFO     | sum of square deviations: 1097571426684.316
[2025-11-20 19:46:54] 2025-11-20 18:45:53,596 | INFO     | monitor loop #6244: job 0:6891558369 is in state 'finished'
[2025-11-20 19:46:54] 2025-11-20 18:45:53,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:46:54] 2025-11-20 18:45:53,665 | INFO     | sum of deviations: 3198463895875.79
[2025-11-20 19:46:54] 2025-11-20 18:45:53,666 | INFO     | mean x: 1763617436.8366141
[2025-11-20 19:46:54] 2025-11-20 18:45:53,666 | INFO     | mean y: 2879993.276246719
[2025-11-20 19:46:54] 2025-11-20 18:45:53,666 | INFO     | intersect: -5136527393.539172
[2025-11-20 19:46:54] 2025-11-20 18:45:53,668 | INFO     | chi2: 12.406635436002219
[2025-11-20 19:46:54] 2025-11-20 18:45:53,668 | INFO     | current chi2=12.406635436002219 (change=20.197551832061823 %)
[2025-11-20 19:46:54] 2025-11-20 18:45:53,668 | INFO     | right removable region: 1523
[2025-11-20 19:46:54] 2025-11-20 18:45:53,670 | INFO     | sum of square deviations: 1097570184114.3162
[2025-11-20 19:46:54] 2025-11-20 18:45:53,735 | INFO     | sum of deviations: 2229783742915.8223
[2025-11-20 19:46:54] 2025-11-20 18:45:53,735 | INFO     | mean x: 1763617741.8366141
[2025-11-20 19:46:54] 2025-11-20 18:45:53,735 | INFO     | mean y: 2879466.00328084
[2025-11-20 19:46:54] 2025-11-20 18:45:53,735 | INFO     | intersect: -3580022316.845817
[2025-11-20 19:46:54] 2025-11-20 18:45:53,737 | INFO     | chi2: 13.129785879337234
[2025-11-20 19:46:54] 2025-11-20 18:45:53,737 | INFO     | current chi2=13.129785879337234 (change=15.54607512271961 %)
[2025-11-20 19:46:54] 2025-11-20 18:45:53,737 | INFO     | left removable region: 10
[2025-11-20 19:46:54] 2025-11-20 18:45:53,740 | INFO     | sum of square deviations: 1073975657258.6565
[2025-11-20 19:46:54] 2025-11-20 18:45:53,818 | INFO     | sum of deviations: 2730713912619.5933
[2025-11-20 19:46:54] 2025-11-20 18:45:53,819 | INFO     | mean x: 1763617711.3423662
[2025-11-20 19:46:54] 2025-11-20 18:45:53,819 | INFO     | mean y: 2889759.713152677
[2025-11-20 19:46:54] 2025-11-20 18:45:53,819 | INFO     | intersect: -4481323069.838024
[2025-11-20 19:46:54] 2025-11-20 18:45:53,821 | INFO     | chi2: 9.169391814995935
[2025-11-20 19:46:54] 2025-11-20 18:45:53,821 | INFO     | current memory leak: 2.54 B/s (using 1513 data points, chi2=9.17)
[2025-11-20 19:46:54] 2025-11-20 18:45:53,824 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-20 19:46:54] 2025-11-20 18:45:53,824 | INFO     | ..............................
[2025-11-20 19:46:54] 2025-11-20 18:45:53,824 | INFO     | . Timing measurements:
[2025-11-20 19:46:54] 2025-11-20 18:45:53,824 | INFO     | . get job = 0 s
[2025-11-20 19:46:54] 2025-11-20 18:45:53,825 | INFO     | . initial setup = 7 s
[2025-11-20 19:46:54] 2025-11-20 18:45:53,825 | INFO     | . payload setup = 18 s
[2025-11-20 19:46:54] 2025-11-20 18:45:53,825 | INFO     | . stage-in = 0 s
[2025-11-20 19:46:54] 2025-11-20 18:45:53,825 | INFO     | . payload execution = 93282 s
[2025-11-20 19:46:54] 2025-11-20 18:45:53,825 | INFO     | . stage-out = 6 s
[2025-11-20 19:46:54] 2025-11-20 18:45:53,825 | INFO     | . log creation = 2 s
[2025-11-20 19:46:54] 2025-11-20 18:45:53,825 | INFO     | ..............................
[2025-11-20 19:46:54] 2025-11-20 18:45:54,023 | INFO     | 
[2025-11-20 19:46:54] 2025-11-20 18:45:54,023 | INFO     | job summary report
[2025-11-20 19:46:54] 2025-11-20 18:45:54,023 | INFO     | --------------------------------------------------
[2025-11-20 19:46:54] 2025-11-20 18:45:54,023 | INFO     | PanDA job id: 6891558369
[2025-11-20 19:46:54] 2025-11-20 18:45:54,023 | INFO     | task id: 47493068
[2025-11-20 19:46:54] 2025-11-20 18:45:54,023 | INFO     | errors: (none)
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | pilot state: finished 
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | transexitcode: 0
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | exeerrorcode: 0
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | exeerrordiag: 
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | exitcode: 0
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | exitmsg: OK
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | cpuconsumptiontime: 346807 s
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | nevents: 1000
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | neventsw: 0
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | pid: 28666
[2025-11-20 19:46:54] 2025-11-20 18:45:54,024 | INFO     | pgrp: 28666
[2025-11-20 19:46:54] 2025-11-20 18:45:54,025 | INFO     | corecount: 8
[2025-11-20 19:46:54] 2025-11-20 18:45:54,025 | INFO     | event service: False
[2025-11-20 19:46:54] 2025-11-20 18:45:54,025 | INFO     | sizes: {0: 2296368, 1: 2297053, 2: 2297252, 13: 2297252, 24: 2297308, 34: 2297336, 45: 2297492, 56: 2297520, 67: 2297548, 77: 2297576, 88: 2297632, 99: 2297940, 10
[2025-11-20 19:46:54] 2025-11-20 18:45:54,025 | INFO     | --------------------------------------------------
[2025-11-20 19:46:54] 2025-11-20 18:45:54,025 | INFO     | 
[2025-11-20 19:46:54] 2025-11-20 18:45:54,025 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-20 19:46:54] 2025-11-20 18:45:54,296 | INFO     | time since job start (93592s) is within the limit (172800.0s)
[2025-11-20 19:46:54] 2025-11-20 18:45:54,296 | INFO     | 93599s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 19:46:54] 2025-11-20 18:45:54,606 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,606 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,606 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,606 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,606 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,606 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,606 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,606 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,607 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 19:46:54] 2025-11-20 18:45:54,608 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,608 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 19:46:54] 2025-11-20 18:45:54,608 | INFO     | job 6891558369 has completed (purged errors)
[2025-11-20 19:46:54] 2025-11-20 18:45:54,608 | INFO     | overall cleanup function is called
[2025-11-20 19:46:54] 2025-11-20 18:45:55,630 | INFO     | --- collectZombieJob: --- 10, [28666]
[2025-11-20 19:46:54] 2025-11-20 18:45:55,631 | INFO     | zombie collector waiting for pid 28666
[2025-11-20 19:46:54] 2025-11-20 18:45:55,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 19:46:54] 2025-11-20 18:45:55,631 | INFO     | collected zombie processes
[2025-11-20 19:46:54] 2025-11-20 18:45:55,631 | INFO     | will attempt to kill all subprocesses of pid=28666
[2025-11-20 19:46:54] 2025-11-20 18:45:55,781 | INFO     | process IDs to be killed: [28666] (in reverse order)
[2025-11-20 19:46:54] 2025-11-20 18:45:56,346 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 19:46:54] 2025-11-20 18:45:56,347 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 19:46:54] 2025-11-20 18:45:56,350 | INFO     | did not find any defunct processes belonging to 28666
[2025-11-20 19:46:54] 2025-11-20 18:45:56,353 | INFO     | did not find any defunct processes belonging to 28666
[2025-11-20 19:46:54] 2025-11-20 18:45:56,401 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 19:46:54] 2025-11-20 18:45:56,401 | INFO     | ready for new job
[2025-11-20 19:46:54] 2025-11-20 18:45:56,402 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 19:46:54] 2025-11-20 18:45:56,409 | INFO     | ***************************************
[2025-11-20 19:46:54] 2025-11-20 18:45:56,409 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 19:46:54] 2025-11-20 18:45:56,409 | INFO     | ***************************************
[2025-11-20 19:46:54] 2025-11-20 18:45:56,409 | INFO     | 
[2025-11-20 19:46:54] 2025-11-20 18:45:56,410 | INFO     | pilot is running in a VM
[2025-11-20 19:46:54] 2025-11-20 18:45:56,410 | INFO     | architecture information:
[2025-11-20 19:46:54] 2025-11-20 18:45:56,418 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:46:54] 2025-11-20 18:45:56,649 | INFO     | cat /etc/os-release:
[2025-11-20 19:46:54] NAME="CentOS Linux"
[2025-11-20 19:46:54] VERSION="7 (Core)"
[2025-11-20 19:46:54] ID="centos"
[2025-11-20 19:46:54] ID_LIKE="rhel fedora"
[2025-11-20 19:46:54] VERSION_ID="7"
[2025-11-20 19:46:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:46:54] ANSI_COLOR="0;31"
[2025-11-20 19:46:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:46:54] HOME_URL="https://www.centos.org/"
[2025-11-20 19:46:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:46:54] 
[2025-11-20 19:46:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:46:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:46:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:46:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:46:54] 
[2025-11-20 19:46:54] 2025-11-20 18:45:56,650 | INFO     | ***************************************
[2025-11-20 19:46:54] 2025-11-20 18:45:57,154 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-20 19:46:54] 2025-11-20 18:45:57,373 | INFO     | sufficient remaining disk space (494030290944 B)
[2025-11-20 19:46:54] 2025-11-20 18:45:57,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:46:54] 2025-11-20 18:45:57,374 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:46:54] 2025-11-20 18:45:57,374 | INFO     | update_server=False
[2025-11-20 19:46:54] 2025-11-20 18:45:57,374 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:46:54] 2025-11-20 18:45:57,375 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:46:54] 2025-11-20 18:45:57,375 | INFO     | aborting loop
[2025-11-20 19:46:54] 2025-11-20 18:45:57,518 | INFO     | all payload control threads have been joined
[2025-11-20 19:46:54] 2025-11-20 18:45:57,814 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:46:54] 2025-11-20 18:45:58,106 | INFO     | all data control threads have been joined
[2025-11-20 19:46:54] 2025-11-20 18:45:58,298 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:46:54] 2025-11-20 18:45:58,380 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:58,381 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:58,426 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:58,524 | INFO     | [payload] control thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:58,560 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:58,735 | INFO     | all job control threads have been joined
[2025-11-20 19:46:54] 2025-11-20 18:45:58,974 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:46:54] 2025-11-20 18:45:59,027 | INFO     | [job] validate thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:59,053 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:59,112 | INFO     | [data] control thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:59,301 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:59,311 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:59,682 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:59,742 | INFO     | [job] control thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:59,752 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:45:59,980 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:46:00,305 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:46:01,824 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:46:54] 2025-11-20 18:46:27,527 | INFO     | PID=22018 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 19:46:54] 2025-11-20 18:46:27,527 | INFO     | .. there are 9 such processes running
[2025-11-20 19:46:54] 2025-11-20 18:46:27,527 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:46:54] 2025-11-20 18:46:27,527 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:46:54] 2025-11-20 18:46:27,527 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:46:54] 2025-11-20 18:46:46,116 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:46:54] 2025-11-20 18:46:46,391 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140695412635456)>', '<ExcThread(monitor, started 140694974871296)>']
[2025-11-20 19:46:54] 2025-11-20 18:46:46,642 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:46:54] 2025-11-20 18:46:46,643 | INFO     | [monitor] control thread has ended
[2025-11-20 19:46:54] 2025-11-20 18:46:51,416 | INFO     | all workflow threads have been joined
[2025-11-20 19:46:54] 2025-11-20 18:46:51,416 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:46:54] 2025-11-20 18:46:51,416 | INFO     | traces error code: 0
[2025-11-20 19:46:54] 2025-11-20 18:46:51,416 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:46:54] 2025-11-20 18:46:51,672 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:46:54] 2025-11-20 18:46:51,697 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:46:54] 2025-11-20 18:46:51,775 [wrapper] pilotpid: 22018
[2025-11-20 19:46:54] 2025-11-20 18:46:51,838 [wrapper] Pilot exit status: 0
[2025-11-20 19:46:54] 2025-11-20 18:46:52,203 [wrapper] pandaids: 6891558369
[2025-11-20 19:46:54] 2025-11-20 18:46:52,262 [wrapper] cleanup supervisor_pilot 19303 22019
[2025-11-20 19:46:54] 2025-11-20 18:46:52,282 [wrapper] Test setup, not cleaning
[2025-11-20 19:46:54] 2025-11-20 18:46:52,315 [wrapper] apfmon messages muted
[2025-11-20 19:46:54] 2025-11-20 18:46:52,342 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:46:54] 2025-11-20 18:46:52,457 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:46:54]  *** Error codes and diagnostics ***
[2025-11-20 19:46:54]     "exeErrorCode": 0,
[2025-11-20 19:46:54]     "exeErrorDiag": "",
[2025-11-20 19:46:54]     "pilotErrorCode": 0,
[2025-11-20 19:46:54]     "pilotErrorDiag": "",
[2025-11-20 19:46:54]  *** Listing of results directory ***
[2025-11-20 19:46:54] total 1346396
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:20 queuedata.json
[2025-11-20 19:46:54] -rwx------. 1 boinc boinc     36292 Nov 18 16:21 runpilot2-wrapper.sh
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc       100 Nov 19 17:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:46:54] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 17:41 run_atlas
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc       105 Nov 19 17:41 job.xml
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc      6389 Nov 19 17:41 init_data.xml
[2025-11-20 19:46:54] -rw-r--r--. 2 boinc boinc 411185310 Nov 19 17:41 EVNT.47493065._000055.pool.root.1
[2025-11-20 19:46:54] -rw-r--r--. 2 boinc boinc     15120 Nov 19 17:41 start_atlas.sh
[2025-11-20 19:46:54] drwxrwx--x. 2 boinc boinc        68 Nov 19 17:41 shared
[2025-11-20 19:46:54] -rw-r--r--. 2 boinc boinc    590102 Nov 19 17:41 input.tar.gz
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc         0 Nov 19 17:41 boinc_lockfile
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc      2771 Nov 19 17:42 pandaJob.out
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc    989426 Nov 19 17:45 agis_schedconf.cvmfs.json
[2025-11-20 19:46:54] drwx------. 5 boinc boinc      4096 Nov 19 17:46 pilot3
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc       533 Nov 20 19:19 boinc_task_state.xml
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc 933607554 Nov 20 19:42 HITS.47493068._000548.pool.root.1
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc      1031 Nov 20 19:44 memory_monitor_summary.json
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc   1526164 Nov 20 19:44 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc   2579660 Nov 20 19:44 log.47493068._000548.job.log.tgz.1
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc        95 Nov 20 19:45 pilot_heartbeat.json
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc      8622 Nov 20 19:45 heartbeat.json
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc        29 Nov 20 19:46 wrapper_checkpoint.txt
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc      8192 Nov 20 19:46 boinc_mmap_file
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc      4884 Nov 20 19:46 pilotlog.txt
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc  12420921 Nov 20 19:46 log.47493068._000548.job.log.1
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc       353 Nov 20 19:46 output.list
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc       620 Nov 20 19:46 runtime_log
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc  15022080 Nov 20 19:46 result.tar.gz
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc       662 Nov 20 19:46 Zf4LDmMhcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZBFKDmSuVsUn.diag
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc      8703 Nov 20 19:46 runtime_log.err
[2025-11-20 19:46:54] -rw-r--r--. 1 boinc boinc     21467 Nov 20 19:46 stderr.txt
[2025-11-20 19:46:54] HITS file was successfully produced:
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc 933607554 Nov 20 19:42 shared/HITS.pool.root.1
[2025-11-20 19:46:54]  *** Contents of shared directory: ***
[2025-11-20 19:46:54] total 1328548
[2025-11-20 19:46:54] -rw-r--r--. 2 boinc boinc 411185310 Nov 19 17:41 ATLAS.root_0
[2025-11-20 19:46:54] -rw-r--r--. 2 boinc boinc     15120 Nov 19 17:41 start_atlas.sh
[2025-11-20 19:46:54] -rw-r--r--. 2 boinc boinc    590102 Nov 19 17:41 input.tar.gz
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc 933607554 Nov 20 19:42 HITS.pool.root.1
[2025-11-20 19:46:54] -rw-------. 1 boinc boinc  15022080 Nov 20 19:46 result.tar.gz
19:46:56 (18186): run_atlas exited; CPU time 347354.629282
19:46:56 (18186): called boinc_finish(0)

</stderr_txt>
]]>

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