Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:53:39 (30244): wrapper (7.7.26015): starting
18:53:39 (30244): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 18:53:39] Arguments: --nthreads 8
[2025-11-20 18:53:39] Threads: 8
[2025-11-20 18:53:39] Checking for CVMFS
[2025-11-20 18:53:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 18:53:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 18:53:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 18:53:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 18:53:41] 2.11.2.0 570 276894 141592 153088 3 294 21306833 25165825 4608 130560 2 120587031 99.873 79913927 3121 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 18:53:41] CVMFS is ok
[2025-11-20 18:53:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 18:53:41] Checking for apptainer binary...
[2025-11-20 18:53:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 18:53:41] Running /usr/bin/apptainer --version
[2025-11-20 18:53:41] apptainer version 1.3.2-1.el7
[2025-11-20 18:53:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 18:53:54] cg-vwn366.simple-grid.lan
[2025-11-20 18:53:54] apptainer works
[2025-11-20 18:53:54] Set ATHENA_PROC_NUMBER=8
[2025-11-20 18:53:54] Set ATHENA_CORE_NUMBER=8
[2025-11-20 18:53:54] Starting ATLAS job with PandaID=6891555550
[2025-11-20 18:53:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 20:01:14]  *** The last 200 lines of the pilot log: ***
[2025-11-21 20:01:14] 2025-11-21 19:00:26,272 | INFO     | time since job start (90200s) is within the limit (172800.0s)
[2025-11-21 20:01:14] 2025-11-21 19:00:27,457 | INFO     | monitor loop #6003: job 0:6891555550 is in state 'finished'
[2025-11-21 20:01:14] 2025-11-21 19:00:27,457 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 20:01:14] 2025-11-21 19:00:28,283 | INFO     | time since job start (90202s) is within the limit (172800.0s)
[2025-11-21 20:01:14] 2025-11-21 19:00:29,962 | INFO     | monitor loop #6004: job 0:6891555550 is in state 'finished'
[2025-11-21 20:01:14] 2025-11-21 19:00:29,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 20:01:14] 2025-11-21 19:00:30,290 | INFO     | time since job start (90204s) is within the limit (172800.0s)
[2025-11-21 20:01:14] 2025-11-21 19:00:32,298 | INFO     | time since job start (90206s) is within the limit (172800.0s)
[2025-11-21 20:01:14] 2025-11-21 19:00:32,470 | INFO     | monitor loop #6005: job 0:6891555550 is in state 'finished'
[2025-11-21 20:01:14] 2025-11-21 19:00:32,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 20:01:14] 2025-11-21 19:00:34,305 | INFO     | time since job start (90208s) is within the limit (172800.0s)
[2025-11-21 20:01:14] 2025-11-21 19:00:34,974 | INFO     | monitor loop #6006: job 0:6891555550 is in state 'finished'
[2025-11-21 20:01:14] 2025-11-21 19:00:34,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 20:01:14] 2025-11-21 19:00:35,508 | INFO     | PID=1661 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 20:01:14] 2025-11-21 19:00:35,508 | INFO     | .. there are 9 such processes running
[2025-11-21 20:01:14] 2025-11-21 19:00:36,510 | INFO     | time since job start (90210s) is within the limit (172800.0s)
[2025-11-21 20:01:14] 2025-11-21 19:00:36,648 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 20:01:14] 2025-11-21 19:00:36,650 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 20:01:14] 2025-11-21 19:00:36,651 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891555550/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 20:01:14] 2025-11-21 19:00:36,652 | INFO     | extracted standard info from prmon json
[2025-11-21 20:01:14] 2025-11-21 19:00:36,652 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 20:01:14] 2025-11-21 19:00:36,652 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 20:01:14] 2025-11-21 19:00:36,692 | INFO     | fitting pss+swap vs Time
[2025-11-21 20:01:14] 2025-11-21 19:00:36,695 | INFO     | sum of square deviations: 997094304510.2484
[2025-11-21 20:01:14] 2025-11-21 19:00:36,778 | INFO     | sum of deviations: 1579196885763.6685
[2025-11-21 20:01:14] 2025-11-21 19:00:36,779 | INFO     | mean x: 1763706494.6395664
[2025-11-21 20:01:14] 2025-11-21 19:00:36,779 | INFO     | mean y: 2888654.724932249
[2025-11-21 20:01:14] 2025-11-21 19:00:36,779 | INFO     | intersect: -2790467792.2402425
[2025-11-21 20:01:14] 2025-11-21 19:00:36,781 | INFO     | chi2: 14.210761582512434
[2025-11-21 20:01:14] 2025-11-21 19:00:36,783 | INFO     | sum of square deviations: 986996004908.7343
[2025-11-21 20:01:14] 2025-11-21 19:00:37,021 | INFO     | sum of deviations: 2064764239822.2144
[2025-11-21 20:01:14] 2025-11-21 19:00:37,022 | INFO     | mean x: 1763706342.1434398
[2025-11-21 20:01:14] 2025-11-21 19:00:37,022 | INFO     | mean y: 2895986.2454112847
[2025-11-21 20:01:14] 2025-11-21 19:00:37,022 | INFO     | intersect: -3686721567.1125207
[2025-11-21 20:01:14] 2025-11-21 19:00:37,024 | INFO     | chi2: 11.184061803169003
[2025-11-21 20:01:14] 2025-11-21 19:00:37,024 | INFO     | current chi2=11.184061803169003 (change=21.298645830973943 %)
[2025-11-21 20:01:14] 2025-11-21 19:00:37,024 | INFO     | right removable region: 1470
[2025-11-21 20:01:14] 2025-11-21 19:00:37,027 | INFO     | sum of square deviations: 986994978888.7343
[2025-11-21 20:01:14] 2025-11-21 19:00:37,121 | INFO     | sum of deviations: 1061860137075.3768
[2025-11-21 20:01:14] 2025-11-21 19:00:37,121 | INFO     | mean x: 1763706647.1434398
[2025-11-21 20:01:14] 2025-11-21 19:00:37,122 | INFO     | mean y: 2896463.8987083617
[2025-11-21 20:01:14] 2025-11-21 19:00:37,122 | INFO     | intersect: -1894590171.9554052
[2025-11-21 20:01:14] 2025-11-21 19:00:37,124 | INFO     | chi2: 11.010850716868479
[2025-11-21 20:01:14] 2025-11-21 19:00:37,124 | INFO     | current chi2=11.010850716868479 (change=22.517518481076493 %)
[2025-11-21 20:01:14] 2025-11-21 19:00:37,124 | INFO     | left removable region: 10
[2025-11-21 20:01:14] 2025-11-21 19:00:37,128 | INFO     | sum of square deviations: 965018561522.4493
[2025-11-21 20:01:14] 2025-11-21 19:00:37,200 | INFO     | sum of deviations: 1499626394289.5852
[2025-11-21 20:01:14] 2025-11-21 19:00:37,201 | INFO     | mean x: 1763706616.649315
[2025-11-21 20:01:14] 2025-11-21 19:00:37,201 | INFO     | mean y: 2907940.930821918
[2025-11-21 20:01:14] 2025-11-21 19:00:37,201 | INFO     | intersect: -2737869386.6449313
[2025-11-21 20:01:14] 2025-11-21 19:00:37,203 | INFO     | chi2: 6.883303524749575
[2025-11-21 20:01:14] 2025-11-21 19:00:37,204 | INFO     | current memory leak: 1.55 B/s (using 1460 data points, chi2=6.88)
[2025-11-21 20:01:14] 2025-11-21 19:00:37,206 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | ..............................
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | . Timing measurements:
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | . get job = 0 s
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | . initial setup = 4 s
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | . payload setup = 15 s
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | . stage-in = 0 s
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | . payload execution = 90047 s
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | . stage-out = 5 s
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | . log creation = 2 s
[2025-11-21 20:01:14] 2025-11-21 19:00:37,207 | INFO     | ..............................
[2025-11-21 20:01:14] 2025-11-21 19:00:37,509 | INFO     | 
[2025-11-21 20:01:14] 2025-11-21 19:00:37,509 | INFO     | job summary report
[2025-11-21 20:01:14] 2025-11-21 19:00:37,509 | INFO     | --------------------------------------------------
[2025-11-21 20:01:14] 2025-11-21 19:00:37,509 | INFO     | PanDA job id: 6891555550
[2025-11-21 20:01:14] 2025-11-21 19:00:37,509 | INFO     | task id: 47493068
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | errors: (none)
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | pilot state: finished 
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | transexitcode: 0
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | exeerrorcode: 0
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | exeerrordiag: 
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | exitcode: 0
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | exitmsg: OK
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | cpuconsumptiontime: 340271 s
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | nevents: 1000
[2025-11-21 20:01:14] 2025-11-21 19:00:37,510 | INFO     | neventsw: 0
[2025-11-21 20:01:14] 2025-11-21 19:00:37,511 | INFO     | pid: 8199
[2025-11-21 20:01:14] 2025-11-21 19:00:37,511 | INFO     | pgrp: 8199
[2025-11-21 20:01:14] 2025-11-21 19:00:37,511 | INFO     | corecount: 8
[2025-11-21 20:01:14] 2025-11-21 19:00:37,511 | INFO     | event service: False
[2025-11-21 20:01:14] 2025-11-21 19:00:37,511 | INFO     | sizes: {0: 2297958, 1: 2298814, 2: 2298814, 13: 2298842, 23: 2298898, 28: 2299188, 34: 2299344, 90067: 2362892, 90068: 2362891, 90075: 2371941, 90077: 2371997, 901
[2025-11-21 20:01:14] 2025-11-21 19:00:37,511 | INFO     | --------------------------------------------------
[2025-11-21 20:01:14] 2025-11-21 19:00:37,511 | INFO     | 
[2025-11-21 20:01:14] 2025-11-21 19:00:37,511 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-21 20:01:14] 2025-11-21 19:00:37,771 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,771 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,771 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,772 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,772 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,772 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,773 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,773 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 20:01:14] 2025-11-21 19:00:37,773 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,774 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 20:01:14] 2025-11-21 19:00:37,774 | INFO     | job 6891555550 has completed (purged errors)
[2025-11-21 20:01:14] 2025-11-21 19:00:37,774 | INFO     | overall cleanup function is called
[2025-11-21 20:01:14] 2025-11-21 19:00:38,792 | INFO     | --- collectZombieJob: --- 10, [8199]
[2025-11-21 20:01:14] 2025-11-21 19:00:38,792 | INFO     | zombie collector waiting for pid 8199
[2025-11-21 20:01:14] 2025-11-21 19:00:38,792 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 20:01:14] 2025-11-21 19:00:38,792 | INFO     | collected zombie processes
[2025-11-21 20:01:14] 2025-11-21 19:00:38,792 | INFO     | will attempt to kill all subprocesses of pid=8199
[2025-11-21 20:01:14] 2025-11-21 19:00:38,897 | INFO     | process IDs to be killed: [8199] (in reverse order)
[2025-11-21 20:01:14] 2025-11-21 19:00:39,690 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 20:01:14] 2025-11-21 19:00:39,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 20:01:14] 2025-11-21 19:00:39,695 | INFO     | did not find any defunct processes belonging to 8199
[2025-11-21 20:01:14] 2025-11-21 19:00:39,698 | INFO     | did not find any defunct processes belonging to 8199
[2025-11-21 20:01:14] 2025-11-21 19:00:39,740 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 20:01:14] 2025-11-21 19:00:39,740 | INFO     | ready for new job
[2025-11-21 20:01:14] 2025-11-21 19:00:39,741 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 20:01:14] 2025-11-21 19:00:39,749 | INFO     | ***************************************
[2025-11-21 20:01:14] 2025-11-21 19:00:39,749 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 20:01:14] 2025-11-21 19:00:39,749 | INFO     | ***************************************
[2025-11-21 20:01:14] 2025-11-21 19:00:39,750 | INFO     | 
[2025-11-21 20:01:14] 2025-11-21 19:00:39,750 | INFO     | pilot is running in a VM
[2025-11-21 20:01:14] 2025-11-21 19:00:39,750 | INFO     | architecture information:
[2025-11-21 20:01:14] 2025-11-21 19:00:39,757 | INFO     | executing command: cat /etc/os-release
[2025-11-21 20:01:14] 2025-11-21 19:00:39,937 | INFO     | cat /etc/os-release:
[2025-11-21 20:01:14] NAME="CentOS Linux"
[2025-11-21 20:01:14] VERSION="7 (Core)"
[2025-11-21 20:01:14] ID="centos"
[2025-11-21 20:01:14] ID_LIKE="rhel fedora"
[2025-11-21 20:01:14] VERSION_ID="7"
[2025-11-21 20:01:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 20:01:14] ANSI_COLOR="0;31"
[2025-11-21 20:01:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 20:01:14] HOME_URL="https://www.centos.org/"
[2025-11-21 20:01:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 20:01:14] 
[2025-11-21 20:01:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 20:01:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 20:01:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 20:01:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 20:01:14] 
[2025-11-21 20:01:14] 2025-11-21 19:00:39,938 | INFO     | ***************************************
[2025-11-21 20:01:14] 2025-11-21 19:00:40,440 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-21 20:01:14] 2025-11-21 19:00:40,725 | INFO     | sufficient remaining disk space (494700331008 B)
[2025-11-21 20:01:14] 2025-11-21 19:00:40,726 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 20:01:14] 2025-11-21 19:00:40,726 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 20:01:14] 2025-11-21 19:00:40,726 | INFO     | update_server=False
[2025-11-21 20:01:14] 2025-11-21 19:00:40,726 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 20:01:14] 2025-11-21 19:00:40,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:01:14] 2025-11-21 19:00:40,990 | INFO     | aborting loop
[2025-11-21 20:01:14] 2025-11-21 19:00:41,011 | INFO     | all data control threads have been joined
[2025-11-21 20:01:14] 2025-11-21 19:00:41,408 | INFO     | all payload control threads have been joined
[2025-11-21 20:01:14] 2025-11-21 19:00:41,591 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 20:01:14] 2025-11-21 19:00:41,733 | INFO     | [job] retrieve thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:41,736 | INFO     | [job] validate thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:41,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 20:01:14] 2025-11-21 19:00:41,891 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:41,929 | INFO     | [payload] validate_post thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:41,940 | INFO     | [payload] failed_post thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:41,996 | INFO     | [job] job monitor thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:42,017 | INFO     | [data] control thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:42,072 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:42,265 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:42,358 | INFO     | [data] copytool_in thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:42,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 20:01:14] 2025-11-21 19:00:42,395 | INFO     | all job control threads have been joined
[2025-11-21 20:01:14] 2025-11-21 19:00:42,414 | INFO     | [payload] control thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:42,535 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:43,365 | INFO     | [job] queue monitor thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:43,402 | INFO     | [job] control thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:43,762 | INFO     | [data] copytool_out thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:44,230 | INFO     | [monitor] cgroup control has ended
[2025-11-21 20:01:14] 2025-11-21 19:00:45,603 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 20:01:14] 2025-11-21 19:00:46,637 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139816222373696)>', '<ExcThread(monitor, started 139815764858624)>']
[2025-11-21 20:01:14] 2025-11-21 19:00:51,663 | INFO     | all workflow threads have been joined
[2025-11-21 20:01:14] 2025-11-21 19:00:51,663 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 20:01:14] 2025-11-21 19:00:51,663 | INFO     | traces error code: 0
[2025-11-21 20:01:14] 2025-11-21 19:00:51,664 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 20:01:14] 2025-11-21 19:01:09,730 | INFO     | PID=1661 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 20:01:14] 2025-11-21 19:01:09,731 | INFO     | .. there are 9 such processes running
[2025-11-21 20:01:14] 2025-11-21 19:01:09,733 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 20:01:14] 2025-11-21 19:01:09,733 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 20:01:14] 2025-11-21 19:01:09,733 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 20:01:14] 2025-11-21 19:01:09,733 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 20:01:14] 2025-11-21 19:01:09,733 | INFO     | [monitor] control thread has ended
[2025-11-21 20:01:14] 2025-11-21 19:01:10,167 [wrapper] ==== pilot stdout END ====
[2025-11-21 20:01:14] 2025-11-21 19:01:10,296 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 20:01:14] 2025-11-21 19:01:10,402 [wrapper] pilotpid: 1661
[2025-11-21 20:01:14] 2025-11-21 19:01:10,453 [wrapper] Pilot exit status: 0
[2025-11-21 20:01:14] 2025-11-21 19:01:10,727 [wrapper] pandaids: 6891555550
[2025-11-21 20:01:14] 2025-11-21 19:01:11,495 [wrapper] cleanup supervisor_pilot 23059 1662
[2025-11-21 20:01:14] 2025-11-21 19:01:11,555 [wrapper] Test setup, not cleaning
[2025-11-21 20:01:14] 2025-11-21 19:01:11,595 [wrapper] apfmon messages muted
[2025-11-21 20:01:14] 2025-11-21 19:01:11,634 [wrapper] ==== wrapper stdout END ====
[2025-11-21 20:01:14] 2025-11-21 19:01:11,670 [wrapper] ==== wrapper stderr END ====
[2025-11-21 20:01:14]  *** Error codes and diagnostics ***
[2025-11-21 20:01:14]     "exeErrorCode": 0,
[2025-11-21 20:01:14]     "exeErrorDiag": "",
[2025-11-21 20:01:14]     "pilotErrorCode": 0,
[2025-11-21 20:01:14]     "pilotErrorDiag": "",
[2025-11-21 20:01:14]  *** Listing of results directory ***
[2025-11-21 20:01:14] total 1341432
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:15 queuedata.json
[2025-11-21 20:01:14] -rwx------. 1 boinc boinc     36292 Nov 18 16:18 runpilot2-wrapper.sh
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc       100 Nov 20 18:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 20:01:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 18:53 run_atlas
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc       105 Nov 20 18:53 job.xml
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc      6389 Nov 20 18:53 init_data.xml
[2025-11-21 20:01:14] -rw-r--r--. 2 boinc boinc 410682085 Nov 20 18:53 EVNT.47493065._000033.pool.root.1
[2025-11-21 20:01:14] -rw-r--r--. 2 boinc boinc     15120 Nov 20 18:53 start_atlas.sh
[2025-11-21 20:01:14] drwxrwx--x. 2 boinc boinc        68 Nov 20 18:53 shared
[2025-11-21 20:01:14] -rw-r--r--. 2 boinc boinc    590093 Nov 20 18:53 input.tar.gz
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc         0 Nov 20 18:53 boinc_lockfile
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc      2768 Nov 20 18:53 pandaJob.out
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc    989440 Nov 20 18:57 agis_schedconf.cvmfs.json
[2025-11-21 20:01:14] drwx------. 5 boinc boinc      4096 Nov 20 18:57 pilot3
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc       533 Nov 21 19:37 boinc_task_state.xml
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc 929996980 Nov 21 19:57 HITS.47493068._000321.pool.root.1
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc      1033 Nov 21 19:58 memory_monitor_summary.json
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc   1526164 Nov 21 19:58 agis_ddmendpoints.agis.ALL.json
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc   2536541 Nov 21 19:59 log.47493068._000321.job.log.tgz.1
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc      8633 Nov 21 20:00 heartbeat.json
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc      8192 Nov 21 20:00 boinc_mmap_file
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc        29 Nov 21 20:00 wrapper_checkpoint.txt
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc        95 Nov 21 20:01 pilot_heartbeat.json
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc       819 Nov 21 20:01 pilotlog.txt
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc  11980674 Nov 21 20:01 log.47493068._000321.job.log.1
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc       353 Nov 21 20:01 output.list
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc       620 Nov 21 20:01 runtime_log
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc  14540800 Nov 21 20:01 result.tar.gz
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc      8703 Nov 21 20:01 runtime_log.err
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc       662 Nov 21 20:01 1q8KDmRecf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbFFKDmK5Rs9m.diag
[2025-11-21 20:01:14] -rw-r--r--. 1 boinc boinc     21498 Nov 21 20:01 stderr.txt
[2025-11-21 20:01:14] HITS file was successfully produced:
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc 929996980 Nov 21 19:57 shared/HITS.pool.root.1
[2025-11-21 20:01:14]  *** Contents of shared directory: ***
[2025-11-21 20:01:14] total 1324060
[2025-11-21 20:01:14] -rw-r--r--. 2 boinc boinc 410682085 Nov 20 18:53 ATLAS.root_0
[2025-11-21 20:01:14] -rw-r--r--. 2 boinc boinc     15120 Nov 20 18:53 start_atlas.sh
[2025-11-21 20:01:14] -rw-r--r--. 2 boinc boinc    590093 Nov 20 18:53 input.tar.gz
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc 929996980 Nov 21 19:57 HITS.pool.root.1
[2025-11-21 20:01:14] -rw-------. 1 boinc boinc  14540800 Nov 21 20:01 result.tar.gz
20:01:16 (30244): run_atlas exited; CPU time 340843.238405
20:01:16 (30244): called boinc_finish(0)

</stderr_txt>
]]>

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