Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:28 (3491328): wrapper (7.7.26015): starting
00:03:28 (3491328): wrapper: running run_atlas (--nthreads 12)
[2025-11-19 00:03:28] Arguments: --nthreads 12
[2025-11-19 00:03:28] Threads: 12
[2025-11-19 00:03:28] Checking for CVMFS
[2025-11-19 00:03:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:03:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:03:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:03:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:03:31] 2.13.2.0 89619 8948 106984 153030 1 64 26662506 40960000 10946 16776704 0 6643436 99.840 2195279 28645 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 00:03:31] CVMFS is ok
[2025-11-19 00:03:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:03:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:03:31] Further information can be found at the LHC@home message board.
[2025-11-19 00:03:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:03:31] Checking for apptainer binary...
[2025-11-19 00:03:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:03:31] Running /usr/bin/apptainer --version
[2025-11-19 00:03:31] apptainer version 1.4.4-1.el9
[2025-11-19 00:03:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:03:34] c-211-6.aglt2.org
[2025-11-19 00:03:34] apptainer works
[2025-11-19 00:03:34] Set ATHENA_PROC_NUMBER=12
[2025-11-19 00:03:34] Set ATHENA_CORE_NUMBER=12
[2025-11-19 00:03:34] Starting ATLAS job with PandaID=6891070888
[2025-11-19 00:03:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 07:23:06]  *** The last 200 lines of the pilot log: ***
[2025-11-20 07:23:06] 2025-11-20 12:21:43,193 | INFO     | monitor loop #6145: job 0:6891070888 is in state 'finished'
[2025-11-20 07:23:06] 2025-11-20 12:21:43,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 07:23:06] 2025-11-20 12:21:45,024 | INFO     | time since job start (112530s) is within the limit (172800.0s)
[2025-11-20 07:23:06] 2025-11-20 12:21:45,697 | INFO     | monitor loop #6146: job 0:6891070888 is in state 'finished'
[2025-11-20 07:23:06] 2025-11-20 12:21:45,698 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 07:23:06] 2025-11-20 12:21:47,034 | INFO     | time since job start (112532s) is within the limit (172800.0s)
[2025-11-20 07:23:06] 2025-11-20 12:21:48,206 | INFO     | monitor loop #6147: job 0:6891070888 is in state 'finished'
[2025-11-20 07:23:06] 2025-11-20 12:21:48,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 07:23:06] 2025-11-20 12:21:49,043 | INFO     | time since job start (112534s) is within the limit (172800.0s)
[2025-11-20 07:23:06] 2025-11-20 12:21:50,714 | INFO     | monitor loop #6148: job 0:6891070888 is in state 'finished'
[2025-11-20 07:23:06] 2025-11-20 12:21:50,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 07:23:06] 2025-11-20 12:21:51,051 | INFO     | time since job start (112536s) is within the limit (172800.0s)
[2025-11-20 07:23:06] 2025-11-20 12:21:52,710 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 07:23:06] 2025-11-20 12:21:52,723 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2531.7417083333335
[2025-11-20 07:23:06] 2025-11-20 12:21:52,753 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891070888/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 07:23:06] 2025-11-20 12:21:52,754 | INFO     | extracted standard info from prmon json
[2025-11-20 07:23:06] 2025-11-20 12:21:52,754 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 07:23:06] 2025-11-20 12:21:52,754 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 07:23:06] 2025-11-20 12:21:52,826 | INFO     | fitting pss+swap vs Time
[2025-11-20 07:23:06] 2025-11-20 12:21:52,862 | INFO     | sum of square deviations: 1927694973267.333
[2025-11-20 07:23:06] 2025-11-20 12:21:53,262 | INFO     | PID=3497992 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 07:23:06] 2025-11-20 12:21:53,262 | INFO     | .. there are 8 such processes running
[2025-11-20 07:23:06] 2025-11-20 12:21:53,474 | INFO     | monitor loop #6149: job 0:6891070888 is in state 'finished'
[2025-11-20 07:23:06] 2025-11-20 12:21:53,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 07:23:06] 2025-11-20 12:21:53,531 | INFO     | sum of deviations: 12917025246212.715
[2025-11-20 07:23:06] 2025-11-20 12:21:53,531 | INFO     | mean x: 1763585198.3489385
[2025-11-20 07:23:06] 2025-11-20 12:21:53,531 | INFO     | mean y: 3441842.452912357
[2025-11-20 07:23:06] 2025-11-20 12:21:53,532 | INFO     | intersect: -11813922858.306269
[2025-11-20 07:23:06] 2025-11-20 12:21:53,534 | INFO     | chi2: 53.66407920605972
[2025-11-20 07:23:06] 2025-11-20 12:21:53,541 | INFO     | sum of square deviations: 1912026757976.2432
[2025-11-20 07:23:06] 2025-11-20 12:21:53,734 | INFO     | sum of deviations: 13712163709272.365
[2025-11-20 07:23:06] 2025-11-20 12:21:53,735 | INFO     | mean x: 1763585045.7762008
[2025-11-20 07:23:06] 2025-11-20 12:21:53,735 | INFO     | mean y: 3449584.0447598253
[2025-11-20 07:23:06] 2025-11-20 12:21:53,735 | INFO     | intersect: -12644159431.899948
[2025-11-20 07:23:06] 2025-11-20 12:21:53,742 | INFO     | chi2: 49.79482245572765
[2025-11-20 07:23:06] 2025-11-20 12:21:53,742 | INFO     | current chi2=49.79482245572765 (change=7.210142813547346 %)
[2025-11-20 07:23:06] 2025-11-20 12:21:53,742 | INFO     | right removable region: 1831
[2025-11-20 07:23:06] 2025-11-20 12:21:53,745 | INFO     | sum of square deviations: 1911957903927.4192
[2025-11-20 07:23:06] 2025-11-20 12:21:53,922 | INFO     | sum of deviations: 11969587158002.285
[2025-11-20 07:23:06] 2025-11-20 12:21:53,922 | INFO     | mean x: 1763585351.2565503
[2025-11-20 07:23:06] 2025-11-20 12:21:53,922 | INFO     | mean y: 3451047.8673580787
[2025-11-20 07:23:06] 2025-11-20 12:21:53,922 | INFO     | intersect: -11037267227.927221
[2025-11-20 07:23:06] 2025-11-20 12:21:53,929 | INFO     | chi2: 48.711237222212375
[2025-11-20 07:23:06] 2025-11-20 12:21:53,930 | INFO     | current chi2=48.711237222212375 (change=9.229343085957712 %)
[2025-11-20 07:23:06] 2025-11-20 12:21:53,930 | INFO     | left removable region: 10
[2025-11-20 07:23:06] 2025-11-20 12:21:53,936 | INFO     | sum of square deviations: 1877719458088.296
[2025-11-20 07:23:06] 2025-11-20 12:21:54,104 | INFO     | sum of deviations: 12019128407510.506
[2025-11-20 07:23:06] 2025-11-20 12:21:54,105 | INFO     | mean x: 1763585321.0801756
[2025-11-20 07:23:06] 2025-11-20 12:21:54,105 | INFO     | mean y: 3468971.9143327842
[2025-11-20 07:23:06] 2025-11-20 12:21:54,105 | INFO     | intersect: -11285096175.748178
[2025-11-20 07:23:06] 2025-11-20 12:21:54,112 | INFO     | chi2: 39.92029326831273
[2025-11-20 07:23:06] 2025-11-20 12:21:54,113 | INFO     | current memory leak: 6.40 B/s (using 1821 data points, chi2=39.92)
[2025-11-20 07:23:06] 2025-11-20 12:21:54,119 | INFO     | could have reported an average CPU frequency of 2528 MHz (64 samples)
[2025-11-20 07:23:06] 2025-11-20 12:21:54,119 | INFO     | ..............................
[2025-11-20 07:23:06] 2025-11-20 12:21:54,119 | INFO     | . Timing measurements:
[2025-11-20 07:23:06] 2025-11-20 12:21:54,119 | INFO     | . get job = 1 s
[2025-11-20 07:23:06] 2025-11-20 12:21:54,119 | INFO     | . initial setup = 19 s
[2025-11-20 07:23:06] 2025-11-20 12:21:54,119 | INFO     | . payload setup = 94 s
[2025-11-20 07:23:06] 2025-11-20 12:21:54,120 | INFO     | . stage-in = 0 s
[2025-11-20 07:23:06] 2025-11-20 12:21:54,120 | INFO     | . payload execution = 112266 s
[2025-11-20 07:23:06] 2025-11-20 12:21:54,120 | INFO     | . stage-out = 8 s
[2025-11-20 07:23:06] 2025-11-20 12:21:54,120 | INFO     | . log creation = 3 s
[2025-11-20 07:23:06] 2025-11-20 12:21:54,120 | INFO     | ..............................
[2025-11-20 07:23:06] 2025-11-20 12:21:54,274 | INFO     | time since job start (112539s) is within the limit (172800.0s)
[2025-11-20 07:23:06] 2025-11-20 12:21:54,348 | INFO     | 
[2025-11-20 07:23:06] 2025-11-20 12:21:54,357 | INFO     | job summary report
[2025-11-20 07:23:06] 2025-11-20 12:21:54,357 | INFO     | --------------------------------------------------
[2025-11-20 07:23:06] 2025-11-20 12:21:54,357 | INFO     | PanDA job id: 6891070888
[2025-11-20 07:23:06] 2025-11-20 12:21:54,357 | INFO     | task id: 47483661
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | errors: (none)
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | pilot state: finished 
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | transexitcode: 0
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | exeerrorcode: 0
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | exeerrordiag: 
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | exitcode: 0
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | exitmsg: OK
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | cpuconsumptiontime: 352943 s
[2025-11-20 07:23:06] 2025-11-20 12:21:54,358 | INFO     | nevents: 1000
[2025-11-20 07:23:06] 2025-11-20 12:21:54,359 | INFO     | neventsw: 0
[2025-11-20 07:23:06] 2025-11-20 12:21:54,359 | INFO     | pid: 3516080
[2025-11-20 07:23:06] 2025-11-20 12:21:54,359 | INFO     | pgrp: 3516080
[2025-11-20 07:23:06] 2025-11-20 12:21:54,359 | INFO     | corecount: 12
[2025-11-20 07:23:06] 2025-11-20 12:21:54,359 | INFO     | event service: False
[2025-11-20 07:23:06] 2025-11-20 12:21:54,359 | INFO     | sizes: {0: 2296372, 1: 2297057, 2: 2297085, 3: 2297256, 4: 2297284, 15: 2297312, 25: 2297468, 36: 2297496, 47: 2297524, 58: 2297580, 60: 2297870, 69: 2298178, 1123
[2025-11-20 07:23:06] 2025-11-20 12:21:54,359 | INFO     | --------------------------------------------------
[2025-11-20 07:23:06] 2025-11-20 12:21:54,359 | INFO     | 
[2025-11-20 07:23:06] 2025-11-20 12:21:54,360 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-20 07:23:06] 2025-11-20 12:21:54,521 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,522 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,522 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,522 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,522 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,522 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,522 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,522 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,523 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,523 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,523 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,523 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,523 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,523 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,523 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,523 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,524 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 07:23:06] 2025-11-20 12:21:54,524 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,524 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 07:23:06] 2025-11-20 12:21:54,524 | INFO     | job 6891070888 has completed (purged errors)
[2025-11-20 07:23:06] 2025-11-20 12:21:54,525 | INFO     | overall cleanup function is called
[2025-11-20 07:23:06] 2025-11-20 12:21:55,589 | INFO     | --- collectZombieJob: --- 10, [3516080]
[2025-11-20 07:23:06] 2025-11-20 12:21:55,589 | INFO     | zombie collector waiting for pid 3516080
[2025-11-20 07:23:06] 2025-11-20 12:21:55,589 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 07:23:06] 2025-11-20 12:21:55,589 | INFO     | collected zombie processes
[2025-11-20 07:23:06] 2025-11-20 12:21:55,589 | INFO     | will attempt to kill all subprocesses of pid=3516080
[2025-11-20 07:23:06] 2025-11-20 12:21:57,293 | INFO     | process IDs to be killed: [3516080] (in reverse order)
[2025-11-20 07:23:06] 2025-11-20 12:21:57,812 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 07:23:06] 2025-11-20 12:21:57,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 07:23:06] 2025-11-20 12:21:57,830 | INFO     | did not find any defunct processes belonging to 3516080
[2025-11-20 07:23:06] 2025-11-20 12:21:57,848 | INFO     | did not find any defunct processes belonging to 3516080
[2025-11-20 07:23:06] 2025-11-20 12:21:57,854 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 07:23:06] 2025-11-20 12:21:57,854 | INFO     | ready for new job
[2025-11-20 07:23:06] 2025-11-20 12:21:57,854 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 07:23:06] 2025-11-20 12:21:57,868 | INFO     | ***************************************
[2025-11-20 07:23:06] 2025-11-20 12:21:57,869 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 07:23:06] 2025-11-20 12:21:57,869 | INFO     | ***************************************
[2025-11-20 07:23:06] 2025-11-20 12:21:57,869 | INFO     | 
[2025-11-20 07:23:06] 2025-11-20 12:21:57,876 | INFO     | architecture information:
[2025-11-20 07:23:06] 2025-11-20 12:21:57,880 | INFO     | executing command: cat /etc/os-release
[2025-11-20 07:23:06] 2025-11-20 12:21:58,060 | INFO     | cat /etc/os-release:
[2025-11-20 07:23:06] NAME="CentOS Linux"
[2025-11-20 07:23:06] VERSION="7 (Core)"
[2025-11-20 07:23:06] ID="centos"
[2025-11-20 07:23:06] ID_LIKE="rhel fedora"
[2025-11-20 07:23:06] VERSION_ID="7"
[2025-11-20 07:23:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 07:23:06] ANSI_COLOR="0;31"
[2025-11-20 07:23:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 07:23:06] HOME_URL="https://www.centos.org/"
[2025-11-20 07:23:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 07:23:06] 
[2025-11-20 07:23:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 07:23:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 07:23:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 07:23:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 07:23:06] 
[2025-11-20 07:23:06] 2025-11-20 12:21:58,061 | INFO     | ***************************************
[2025-11-20 07:23:06] 2025-11-20 12:21:58,570 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-20 07:23:06] 2025-11-20 12:21:58,692 | INFO     | sufficient remaining disk space (61576577024 B)
[2025-11-20 07:23:06] 2025-11-20 12:21:58,693 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 07:23:06] 2025-11-20 12:21:58,693 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 07:23:06] 2025-11-20 12:21:58,693 | INFO     | update_server=False
[2025-11-20 07:23:06] 2025-11-20 12:21:58,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 07:23:06] 2025-11-20 12:21:58,697 | INFO     | all payload control threads have been joined
[2025-11-20 07:23:06] 2025-11-20 12:21:58,936 | INFO     | all data control threads have been joined
[2025-11-20 07:23:06] 2025-11-20 12:21:59,037 | INFO     | all job control threads have been joined
[2025-11-20 07:23:06] 2025-11-20 12:21:59,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 07:23:06] 2025-11-20 12:21:59,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 07:23:06] 2025-11-20 12:21:59,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 07:23:06] 2025-11-20 12:21:59,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 07:23:06] 2025-11-20 12:21:59,507 | INFO     | aborting loop
[2025-11-20 07:23:06] 2025-11-20 12:21:59,701 | INFO     | [job] retrieve thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:21:59,714 | INFO     | [payload] control thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:21:59,942 | INFO     | [data] control thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:21:59,993 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:00,043 | INFO     | [job] control thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:00,170 | INFO     | [data] copytool_in thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:00,171 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:00,422 | INFO     | [job] queue monitor thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:00,513 | INFO     | [job] job monitor thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:00,548 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:00,691 | INFO     | [job] validate thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:00,692 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:00,762 | INFO     | [payload] failed_post thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:01,171 | INFO     | [data] copytool_out thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:01,186 | INFO     | [payload] validate_post thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:03,216 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 07:23:06] 2025-11-20 12:22:28,224 | INFO     | PID=3497992 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 07:23:06] 2025-11-20 12:22:28,224 | INFO     | .. there are 8 such processes running
[2025-11-20 07:23:06] 2025-11-20 12:22:28,225 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 07:23:06] 2025-11-20 12:22:28,226 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 07:23:06] 2025-11-20 12:22:28,226 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 07:23:06] 2025-11-20 12:22:55,660 | INFO     | [monitor] cgroup control has ended
[2025-11-20 07:23:06] 2025-11-20 12:22:56,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140098488010560)>', '<ExcThread(monitor, started 140097974417152)>']
[2025-11-20 07:23:06] 2025-11-20 12:22:57,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 07:23:06] 2025-11-20 12:22:57,506 | INFO     | [monitor] control thread has ended
[2025-11-20 07:23:06] 2025-11-20 12:23:01,828 | INFO     | all workflow threads have been joined
[2025-11-20 07:23:06] 2025-11-20 12:23:01,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 07:23:06] 2025-11-20 12:23:01,846 | INFO     | traces error code: 0
[2025-11-20 07:23:06] 2025-11-20 12:23:01,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 07:23:06] 2025-11-20 12:23:03,385 [wrapper] ==== pilot stdout END ====
[2025-11-20 07:23:06] 2025-11-20 12:23:03,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 07:23:06] 2025-11-20 12:23:03,488 [wrapper] pilotpid: 3497992
[2025-11-20 07:23:06] 2025-11-20 12:23:03,506 [wrapper] Pilot exit status: 0
[2025-11-20 07:23:06] 2025-11-20 12:23:03,600 [wrapper] pandaids: 6891070888
[2025-11-20 07:23:06] 2025-11-20 12:23:03,702 [wrapper] cleanup supervisor_pilot 2029699 3497993
[2025-11-20 07:23:06] 2025-11-20 12:23:03,707 [wrapper] Test setup, not cleaning
[2025-11-20 07:23:06] 2025-11-20 12:23:03,757 [wrapper] apfmon messages muted
[2025-11-20 07:23:06] 2025-11-20 12:23:03,794 [wrapper] ==== wrapper stdout END ====
[2025-11-20 07:23:06] 2025-11-20 12:23:03,866 [wrapper] ==== wrapper stderr END ====
[2025-11-20 07:23:06]  *** Error codes and diagnostics ***
[2025-11-20 07:23:06]     "exeErrorCode": 0,
[2025-11-20 07:23:06]     "exeErrorDiag": "",
[2025-11-20 07:23:06]     "pilotErrorCode": 0,
[2025-11-20 07:23:06]     "pilotErrorDiag": "",
[2025-11-20 07:23:06]  *** Listing of results directory ***
[2025-11-20 07:23:06] total 1339488
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 00:55 pilot3.tar.gz
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 00:58 queuedata.json
[2025-11-20 07:23:06] -rwx------. 1 boincer umatlas     36292 Nov 18 00:59 runpilot2-wrapper.sh
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 07:23:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:03 run_atlas
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:03 job.xml
[2025-11-20 07:23:06] -rw-r--r--. 2 boincer umatlas 412821102 Nov 19 00:03 EVNT.47483658._000152.pool.root.1
[2025-11-20 07:23:06] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:03 start_atlas.sh
[2025-11-20 07:23:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:03 shared
[2025-11-20 07:23:06] -rw-r--r--. 2 boincer umatlas    590099 Nov 19 00:03 input.tar.gz
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:03 boinc_lockfile
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas      2773 Nov 19 00:03 pandaJob.out
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas      2074 Nov 19 00:03 stderr.txt
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas    992806 Nov 19 00:05 agis_schedconf.cvmfs.json
[2025-11-20 07:23:06] drwx------. 5 boincer umatlas      4096 Nov 19 00:06 pilot3
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas       533 Nov 20 06:01 boinc_task_state.xml
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas 922162568 Nov 20 07:19 HITS.47483661._001515.pool.root.1
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas      1080 Nov 20 07:21 memory_monitor_summary.json
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas   1525063 Nov 20 07:21 agis_ddmendpoints.agis.ALL.json
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas   3137251 Nov 20 07:21 log.47483661._001515.job.log.tgz.1
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas      6611 Nov 20 07:21 init_data.xml
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas      8686 Nov 20 07:21 heartbeat.json
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas        95 Nov 20 07:22 pilot_heartbeat.json
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas      4823 Nov 20 07:23 pilotlog.txt
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 07:23 boinc_mmap_file
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas        29 Nov 20 07:23 wrapper_checkpoint.txt
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas  13233274 Nov 20 07:23 log.47483661._001515.job.log.1
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas       353 Nov 20 07:23 output.list
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas       620 Nov 20 07:23 runtime_log
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas  16394240 Nov 20 07:23 result.tar.gz
[2025-11-20 07:23:06] -rw-r--r--. 1 boincer umatlas      8702 Nov 20 07:23 runtime_log.err
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas       668 Nov 20 07:23 iwMNDmEvTf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8HKODm7ePl8n.diag
[2025-11-20 07:23:06] HITS file was successfully produced:
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas 922162568 Nov 20 07:19 shared/HITS.pool.root.1
[2025-11-20 07:23:06]  *** Contents of shared directory: ***
[2025-11-20 07:23:06] total 1320316
[2025-11-20 07:23:06] -rw-r--r--. 2 boincer umatlas 412821102 Nov 19 00:03 ATLAS.root_0
[2025-11-20 07:23:06] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:03 start_atlas.sh
[2025-11-20 07:23:06] -rw-r--r--. 2 boincer umatlas    590099 Nov 19 00:03 input.tar.gz
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas 922162568 Nov 20 07:19 HITS.pool.root.1
[2025-11-20 07:23:06] -rw-------. 1 boincer umatlas  16394240 Nov 20 07:23 result.tar.gz
07:23:08 (3491328): run_atlas exited; CPU time 355420.915533
07:23:08 (3491328): called boinc_finish(0)

</stderr_txt>
]]>

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