Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:49:08 (1518538): wrapper (7.7.26015): starting
20:49:08 (1518538): wrapper: running run_atlas (--nthreads 8)
[2025-11-18 20:49:08] Arguments: --nthreads 8
[2025-11-18 20:49:08] Threads: 8
[2025-11-18 20:49:08] Checking for CVMFS
[2025-11-18 20:49:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 20:49:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 20:49:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 20:49:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 20:49:10] 2.13.2.0 5689 22191 263548 153025 2 619 24154725 39288832 12637 16776704 0 34994269 99.566 51123449 32661 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-18 20:49:10] CVMFS is ok
[2025-11-18 20:49:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 20:49:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 20:49:11] Further information can be found at the LHC@home message board.
[2025-11-18 20:49:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 20:49:11] Checking for apptainer binary...
[2025-11-18 20:49:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 20:49:11] Running /usr/bin/apptainer --version
[2025-11-18 20:49:11] apptainer version 1.4.4-1.el9
[2025-11-18 20:49:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 20:49:11] c-210-11.aglt2.org
[2025-11-18 20:49:11] apptainer works
[2025-11-18 20:49:11] Set ATHENA_PROC_NUMBER=8
[2025-11-18 20:49:11] Set ATHENA_CORE_NUMBER=8
[2025-11-18 20:49:12] Starting ATLAS job with PandaID=6891104790
[2025-11-18 20:49:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 05:16:31]  *** The last 200 lines of the pilot log: ***
[2025-11-20 05:16:31] 2025-11-20 10:15:52,442 | INFO     | total number of processed events: 1000 (read)
[2025-11-20 05:16:31] 2025-11-20 10:15:52,443 | INFO     | executing command: lscpu
[2025-11-20 05:16:31] 2025-11-20 10:15:52,488 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-20 05:16:31] 2025-11-20 10:15:53,481 | INFO     | time since job start (116725s) is within the limit (172800.0s)
[2025-11-20 05:16:31] 2025-11-20 10:15:53,691 | INFO     | monitor loop #6840: job 0:6891104790 is in state 'finished'
[2025-11-20 05:16:31] 2025-11-20 10:15:53,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 05:16:31] 2025-11-20 10:15:55,491 | INFO     | time since job start (116727s) is within the limit (172800.0s)
[2025-11-20 05:16:31] 2025-11-20 10:15:56,199 | INFO     | monitor loop #6841: job 0:6891104790 is in state 'finished'
[2025-11-20 05:16:31] 2025-11-20 10:15:56,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 05:16:31] 2025-11-20 10:15:56,861 | INFO     | PID=1524569 has CPU usage=15.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-20 05:16:31] 2025-11-20 10:15:56,861 | INFO     | .. there are 14 such processes running
[2025-11-20 05:16:31] 2025-11-20 10:15:57,863 | INFO     | time since job start (116729s) is within the limit (172800.0s)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,304 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 05:16:31] 2025-11-20 10:15:58,312 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8019750000003
[2025-11-20 05:16:31] 2025-11-20 10:15:58,324 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891104790/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,325 | INFO     | extracted standard info from prmon json
[2025-11-20 05:16:31] 2025-11-20 10:15:58,325 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 05:16:31] 2025-11-20 10:15:58,325 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 05:16:31] 2025-11-20 10:15:58,369 | INFO     | fitting pss+swap vs Time
[2025-11-20 05:16:31] 2025-11-20 10:15:58,372 | INFO     | sum of square deviations: 2163932075330.9092
[2025-11-20 05:16:31] 2025-11-20 10:15:58,470 | INFO     | sum of deviations: 11043474253859.77
[2025-11-20 05:16:31] 2025-11-20 10:15:58,470 | INFO     | mean x: 1763575456.0068028
[2025-11-20 05:16:31] 2025-11-20 10:15:58,471 | INFO     | mean y: 2900359.5562532707
[2025-11-20 05:16:31] 2025-11-20 10:15:58,471 | INFO     | intersect: -8997382211.777163
[2025-11-20 05:16:31] 2025-11-20 10:15:58,473 | INFO     | chi2: 20.501334965392232
[2025-11-20 05:16:31] 2025-11-20 10:15:58,477 | INFO     | sum of square deviations: 2146992818567.927
[2025-11-20 05:16:31] 2025-11-20 10:15:58,569 | INFO     | sum of deviations: 11709450212158.525
[2025-11-20 05:16:31] 2025-11-20 10:15:58,570 | INFO     | mean x: 1763575303.5173137
[2025-11-20 05:16:31] 2025-11-20 10:15:58,570 | INFO     | mean y: 2906354.8625393496
[2025-11-20 05:16:31] 2025-11-20 10:15:58,570 | INFO     | intersect: -9615429129.69791
[2025-11-20 05:16:31] 2025-11-20 10:15:58,572 | INFO     | chi2: 17.17575768591742
[2025-11-20 05:16:31] 2025-11-20 10:15:58,572 | INFO     | current chi2=17.17575768591742 (change=16.221271859069812 %)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,573 | INFO     | right removable region: 1905
[2025-11-20 05:16:31] 2025-11-20 10:15:58,575 | INFO     | sum of square deviations: 2146988147797.927
[2025-11-20 05:16:31] 2025-11-20 10:15:58,662 | INFO     | sum of deviations: 10251088766711.812
[2025-11-20 05:16:31] 2025-11-20 10:15:58,663 | INFO     | mean x: 1763575608.5173137
[2025-11-20 05:16:31] 2025-11-20 10:15:58,663 | INFO     | mean y: 2907491.2172088143
[2025-11-20 05:16:31] 2025-11-20 10:15:58,663 | INFO     | intersect: -8417525629.599593
[2025-11-20 05:16:31] 2025-11-20 10:15:58,665 | INFO     | chi2: 16.035685054025354
[2025-11-20 05:16:31] 2025-11-20 10:15:58,666 | INFO     | current chi2=16.035685054025354 (change=21.78223963905387 %)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,666 | INFO     | left removable region: 10
[2025-11-20 05:16:31] 2025-11-20 10:15:58,668 | INFO     | sum of square deviations: 2110029306270.1855
[2025-11-20 05:16:31] 2025-11-20 10:15:58,713 | INFO     | monitor loop #6842: job 0:6891104790 is in state 'finished'
[2025-11-20 05:16:31] 2025-11-20 10:15:58,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,760 | INFO     | sum of deviations: 10387889511606.414
[2025-11-20 05:16:31] 2025-11-20 10:15:58,760 | INFO     | mean x: 1763575578.0385225
[2025-11-20 05:16:31] 2025-11-20 10:15:58,760 | INFO     | mean y: 2920733.706596306
[2025-11-20 05:16:31] 2025-11-20 10:15:58,761 | INFO     | intersect: -8679341733.261133
[2025-11-20 05:16:31] 2025-11-20 10:15:58,763 | INFO     | chi2: 9.081392586428406
[2025-11-20 05:16:31] 2025-11-20 10:15:58,763 | INFO     | current memory leak: 4.92 B/s (using 1895 data points, chi2=9.08)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,765 | INFO     | could have reported an average CPU frequency of 2599 MHz (66 samples)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,765 | INFO     | ..............................
[2025-11-20 05:16:31] 2025-11-20 10:15:58,765 | INFO     | . Timing measurements:
[2025-11-20 05:16:31] 2025-11-20 10:15:58,765 | INFO     | . get job = 0 s
[2025-11-20 05:16:31] 2025-11-20 10:15:58,765 | INFO     | . initial setup = 7 s
[2025-11-20 05:16:31] 2025-11-20 10:15:58,766 | INFO     | . payload setup = 53 s
[2025-11-20 05:16:31] 2025-11-20 10:15:58,766 | INFO     | . stage-in = 0 s
[2025-11-20 05:16:31] 2025-11-20 10:15:58,766 | INFO     | . payload execution = 116575 s
[2025-11-20 05:16:31] 2025-11-20 10:15:58,766 | INFO     | . stage-out = 3 s
[2025-11-20 05:16:31] 2025-11-20 10:15:58,766 | INFO     | . log creation = 1 s
[2025-11-20 05:16:31] 2025-11-20 10:15:58,766 | INFO     | ..............................
[2025-11-20 05:16:31] 2025-11-20 10:15:58,863 | INFO     | 
[2025-11-20 05:16:31] 2025-11-20 10:15:58,863 | INFO     | job summary report
[2025-11-20 05:16:31] 2025-11-20 10:15:58,863 | INFO     | --------------------------------------------------
[2025-11-20 05:16:31] 2025-11-20 10:15:58,863 | INFO     | PanDA job id: 6891104790
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | task id: 47483661
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | errors: (none)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | pilot state: finished 
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | transexitcode: 0
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | exeerrorcode: 0
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | exeerrordiag: 
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | exitcode: 0
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | exitmsg: OK
[2025-11-20 05:16:31] 2025-11-20 10:15:58,864 | INFO     | cpuconsumptiontime: 304927 s
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | nevents: 1000
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | neventsw: 0
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | pid: 1539241
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | pgrp: 1539241
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | corecount: 8
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | event service: False
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | sizes: {0: 2296372, 1: 2297057, 2: 2297256, 13: 2297256, 23: 2297312, 34: 2297340, 36: 2297758, 45: 2297786, 116633: 2376945, 116638: 2385939, 116641: 2385995, 116
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | --------------------------------------------------
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | 
[2025-11-20 05:16:31] 2025-11-20 10:15:58,865 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-20 05:16:31] 2025-11-20 10:15:58,891 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,891 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,891 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,893 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,893 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,893 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,893 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,893 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,893 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 05:16:31] 2025-11-20 10:15:58,893 | INFO     | job 6891104790 has completed (purged errors)
[2025-11-20 05:16:31] 2025-11-20 10:15:58,894 | INFO     | overall cleanup function is called
[2025-11-20 05:16:31] 2025-11-20 10:15:59,911 | INFO     | --- collectZombieJob: --- 10, [1539241]
[2025-11-20 05:16:31] 2025-11-20 10:15:59,912 | INFO     | zombie collector waiting for pid 1539241
[2025-11-20 05:16:31] 2025-11-20 10:15:59,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 05:16:31] 2025-11-20 10:15:59,912 | INFO     | collected zombie processes
[2025-11-20 05:16:31] 2025-11-20 10:15:59,912 | INFO     | will attempt to kill all subprocesses of pid=1539241
[2025-11-20 05:16:31] 2025-11-20 10:16:00,202 | INFO     | process IDs to be killed: [1539241] (in reverse order)
[2025-11-20 05:16:31] 2025-11-20 10:16:00,287 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 05:16:31] 2025-11-20 10:16:00,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 05:16:31] 2025-11-20 10:16:00,297 | INFO     | did not find any defunct processes belonging to 1539241
[2025-11-20 05:16:31] 2025-11-20 10:16:00,309 | INFO     | did not find any defunct processes belonging to 1539241
[2025-11-20 05:16:31] 2025-11-20 10:16:00,310 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 05:16:31] 2025-11-20 10:16:00,311 | INFO     | ready for new job
[2025-11-20 05:16:31] 2025-11-20 10:16:00,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 05:16:31] 2025-11-20 10:16:00,317 | INFO     | ***************************************
[2025-11-20 05:16:31] 2025-11-20 10:16:00,317 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 05:16:31] 2025-11-20 10:16:00,317 | INFO     | ***************************************
[2025-11-20 05:16:31] 2025-11-20 10:16:00,317 | INFO     | 
[2025-11-20 05:16:31] 2025-11-20 10:16:00,319 | INFO     | architecture information:
[2025-11-20 05:16:31] 2025-11-20 10:16:00,320 | INFO     | executing command: cat /etc/os-release
[2025-11-20 05:16:31] 2025-11-20 10:16:00,345 | INFO     | cat /etc/os-release:
[2025-11-20 05:16:31] NAME="CentOS Linux"
[2025-11-20 05:16:31] VERSION="7 (Core)"
[2025-11-20 05:16:31] ID="centos"
[2025-11-20 05:16:31] ID_LIKE="rhel fedora"
[2025-11-20 05:16:31] VERSION_ID="7"
[2025-11-20 05:16:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 05:16:31] ANSI_COLOR="0;31"
[2025-11-20 05:16:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 05:16:31] HOME_URL="https://www.centos.org/"
[2025-11-20 05:16:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 05:16:31] 
[2025-11-20 05:16:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 05:16:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 05:16:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 05:16:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 05:16:31] 
[2025-11-20 05:16:31] 2025-11-20 10:16:00,345 | INFO     | ***************************************
[2025-11-20 05:16:31] 2025-11-20 10:16:00,848 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-20 05:16:31] 2025-11-20 10:16:00,865 | INFO     | sufficient remaining disk space (51657048064 B)
[2025-11-20 05:16:31] 2025-11-20 10:16:00,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 05:16:31] 2025-11-20 10:16:00,866 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 05:16:31] 2025-11-20 10:16:00,866 | INFO     | update_server=False
[2025-11-20 05:16:31] 2025-11-20 10:16:00,866 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 05:16:31] 2025-11-20 10:16:00,866 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:16:31] 2025-11-20 10:16:00,885 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 05:16:31] 2025-11-20 10:16:00,932 | INFO     | all job control threads have been joined
[2025-11-20 05:16:31] 2025-11-20 10:16:01,007 | INFO     | all data control threads have been joined
[2025-11-20 05:16:31] 2025-11-20 10:16:01,220 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 05:16:31] 2025-11-20 10:16:01,220 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 05:16:31] 2025-11-20 10:16:01,220 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:16:31] 2025-11-20 10:16:01,220 | INFO     | will abort loop
[2025-11-20 05:16:31] 2025-11-20 10:16:01,873 | INFO     | [job] queue monitor thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:01,873 | INFO     | [job] retrieve thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:01,938 | INFO     | [job] control thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:01,996 | INFO     | all payload control threads have been joined
[2025-11-20 05:16:31] 2025-11-20 10:16:02,014 | INFO     | [data] control thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:02,226 | INFO     | [job] job monitor thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:02,323 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 05:16:31] 2025-11-20 10:16:02,600 | INFO     | [payload] failed_post thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:02,883 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:02,884 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:02,884 | INFO     | [data] copytool_in thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:03,001 | INFO     | [payload] control thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:03,074 | INFO     | [payload] validate_post thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:03,102 | INFO     | [job] validate thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:03,244 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:04,335 | INFO     | [data] copytool_out thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:04,893 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:10,494 | INFO     | [monitor] cgroup control has ended
[2025-11-20 05:16:31] 2025-11-20 10:16:11,328 | INFO     | job.realtimelogging is not enabled
[2025-11-20 05:16:31] 2025-11-20 10:16:12,335 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 05:16:31] 2025-11-20 10:16:14,089 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139677008013120)>', '<ExcThread(monitor, started 139676253923072)>']
[2025-11-20 05:16:31] 2025-11-20 10:16:19,115 | INFO     | all workflow threads have been joined
[2025-11-20 05:16:31] 2025-11-20 10:16:19,115 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 05:16:31] 2025-11-20 10:16:19,115 | INFO     | traces error code: 0
[2025-11-20 05:16:31] 2025-11-20 10:16:19,115 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 05:16:31] 2025-11-20 10:16:31,183 | INFO     | PID=1524569 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 05:16:31] 2025-11-20 10:16:31,183 | INFO     | .. there are 14 such processes running
[2025-11-20 05:16:31] 2025-11-20 10:16:31,183 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 05:16:31] 2025-11-20 10:16:31,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 05:16:31] 2025-11-20 10:16:31,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 05:16:31] 2025-11-20 10:16:31,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 05:16:31] 2025-11-20 10:16:31,184 | INFO     | [monitor] control thread has ended
[2025-11-20 05:16:31] 2025-11-20 10:16:31,348 [wrapper] ==== pilot stdout END ====
[2025-11-20 05:16:31] 2025-11-20 10:16:31,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 05:16:31] 2025-11-20 10:16:31,354 [wrapper] pilotpid: 1524569
[2025-11-20 05:16:31] 2025-11-20 10:16:31,357 [wrapper] Pilot exit status: 0
[2025-11-20 05:16:31] 2025-11-20 10:16:31,370 [wrapper] pandaids: 6891104790
[2025-11-20 05:16:31] 2025-11-20 10:16:31,421 [wrapper] cleanup supervisor_pilot 1028570 1524570
[2025-11-20 05:16:31] 2025-11-20 10:16:31,424 [wrapper] Test setup, not cleaning
[2025-11-20 05:16:31] 2025-11-20 10:16:31,427 [wrapper] apfmon messages muted
[2025-11-20 05:16:31] 2025-11-20 10:16:31,431 [wrapper] ==== wrapper stdout END ====
[2025-11-20 05:16:31] 2025-11-20 10:16:31,434 [wrapper] ==== wrapper stderr END ====
[2025-11-20 05:16:31]  *** Error codes and diagnostics ***
[2025-11-20 05:16:31]     "exeErrorCode": 0,
[2025-11-20 05:16:31]     "exeErrorDiag": "",
[2025-11-20 05:16:31]     "pilotErrorCode": 0,
[2025-11-20 05:16:31]     "pilotErrorDiag": "",
[2025-11-20 05:16:31]  *** Listing of results directory ***
[2025-11-20 05:16:31] total 1331616
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:57 queuedata.json
[2025-11-20 05:16:31] -rwx------. 1 boincer umatlas     36292 Nov 18 01:58 runpilot2-wrapper.sh
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas       100 Nov 18 20:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 05:16:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 18 20:49 run_atlas
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas       105 Nov 18 20:49 job.xml
[2025-11-20 05:16:31] -rw-r--r--. 2 boincer umatlas 409392230 Nov 18 20:49 EVNT.47483658._000228.pool.root.1
[2025-11-20 05:16:31] -rw-r--r--. 2 boincer umatlas    590102 Nov 18 20:49 input.tar.gz
[2025-11-20 05:16:31] -rw-r--r--. 2 boincer umatlas     15120 Nov 18 20:49 start_atlas.sh
[2025-11-20 05:16:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 18 20:49 shared
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas         0 Nov 18 20:49 boinc_lockfile
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas      2773 Nov 18 20:49 pandaJob.out
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas    992806 Nov 18 20:50 agis_schedconf.cvmfs.json
[2025-11-20 05:16:31] drwx------. 5 boincer umatlas      4096 Nov 18 20:50 pilot3
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas       533 Nov 20 05:00 boinc_task_state.xml
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas      6662 Nov 20 05:11 init_data.xml
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas 915484923 Nov 20 05:15 HITS.47483661._001973.pool.root.1
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas      1080 Nov 20 05:15 memory_monitor_summary.json
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas   1525063 Nov 20 05:15 agis_ddmendpoints.agis.ALL.json
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas   2802072 Nov 20 05:15 log.47483661._001973.job.log.tgz.1
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas        95 Nov 20 05:15 pilot_heartbeat.json
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas      8670 Nov 20 05:15 heartbeat.json
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 05:16 boinc_mmap_file
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas        29 Nov 20 05:16 wrapper_checkpoint.txt
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas       823 Nov 20 05:16 pilotlog.txt
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas  14585577 Nov 20 05:16 log.47483661._001973.job.log.1
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas       353 Nov 20 05:16 output.list
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas       620 Nov 20 05:16 runtime_log
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas  17408000 Nov 20 05:16 result.tar.gz
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas      8705 Nov 20 05:16 runtime_log.err
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas       668 Nov 20 05:16 cFKKDmSqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmI7qMDmycGBIo.diag
[2025-11-20 05:16:31] -rw-r--r--. 1 boincer umatlas     21878 Nov 20 05:16 stderr.txt
[2025-11-20 05:16:31] HITS file was successfully produced:
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas 915484923 Nov 20 05:15 shared/HITS.pool.root.1
[2025-11-20 05:16:31]  *** Contents of shared directory: ***
[2025-11-20 05:16:31] total 1311432
[2025-11-20 05:16:31] -rw-r--r--. 2 boincer umatlas 409392230 Nov 18 20:49 ATLAS.root_0
[2025-11-20 05:16:31] -rw-r--r--. 2 boincer umatlas    590102 Nov 18 20:49 input.tar.gz
[2025-11-20 05:16:31] -rw-r--r--. 2 boincer umatlas     15120 Nov 18 20:49 start_atlas.sh
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas 915484923 Nov 20 05:15 HITS.pool.root.1
[2025-11-20 05:16:31] -rw-------. 1 boincer umatlas  17408000 Nov 20 05:16 result.tar.gz
05:16:33 (1518538): run_atlas exited; CPU time 306880.870982
05:16:33 (1518538): called boinc_finish(0)

</stderr_txt>
]]>

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