Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:12:21 (1228172): wrapper (7.7.26015): starting
15:12:21 (1228172): wrapper: running run_atlas (--nthreads 4)
[2025-11-18 15:12:21] Arguments: --nthreads 4
[2025-11-18 15:12:21] Threads: 4
[2025-11-18 15:12:21] Checking for CVMFS
[2025-11-18 15:12:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 15:12:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 15:12:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 15:12:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 15:12:21] 2.9.2.0 1168875 407 57488 153001 1 81 28299429 36864000 0 130560 0 162978 98.890 195607 29868 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-18 15:12:21] CVMFS is ok
[2025-11-18 15:12:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 15:12:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 15:12:21] Further information can be found at the LHC@home message board.
[2025-11-18 15:12:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 15:12:21] Checking for apptainer binary...
[2025-11-18 15:12:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 15:12:21] Running /usr/bin/apptainer --version
[2025-11-18 15:12:21] apptainer version 1.4.1-1.1
[2025-11-18 15:12:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 15:12:21] cosA131b
[2025-11-18 15:12:21] apptainer works
[2025-11-18 15:12:21] Set ATHENA_PROC_NUMBER=4
[2025-11-18 15:12:21] Set ATHENA_CORE_NUMBER=4
[2025-11-18 15:12:21] Starting ATLAS job with PandaID=6891106296
[2025-11-18 15:12:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 22:10:08]  *** The last 200 lines of the pilot log: ***
[2025-11-18 22:10:08] 2025-11-18 21:09:32,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-18 22:10:08] 2025-11-18 21:09:33,746 | INFO     | time since job start (25024s) is within the limit (172800.0s)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,269 | INFO     | monitor loop #1906: job 0:6891106296 is in state 'finished'
[2025-11-18 22:10:08] 2025-11-18 21:09:35,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,532 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-18 22:10:08] 2025-11-18 21:09:35,534 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3284.5784999999996
[2025-11-18 22:10:08] 2025-11-18 21:09:35,535 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6891106296/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,535 | INFO     | extracted standard info from prmon json
[2025-11-18 22:10:08] 2025-11-18 21:09:35,535 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 22:10:08] 2025-11-18 21:09:35,536 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 22:10:08] 2025-11-18 21:09:35,538 | INFO     | fitting pss+swap vs Time
[2025-11-18 22:10:08] 2025-11-18 21:09:35,539 | INFO     | sum of square deviations: 21371126282.5
[2025-11-18 22:10:08] 2025-11-18 21:09:35,540 | INFO     | sum of deviations: 227128483939.50006
[2025-11-18 22:10:08] 2025-11-18 21:09:35,540 | INFO     | mean x: 1763487647.5
[2025-11-18 22:10:08] 2025-11-18 21:09:35,540 | INFO     | mean y: 2387102.66097561
[2025-11-18 22:10:08] 2025-11-18 21:09:35,540 | INFO     | intersect: -18739642237.678284
[2025-11-18 22:10:08] 2025-11-18 21:09:35,541 | INFO     | chi2: 4.541377430075334
[2025-11-18 22:10:08] 2025-11-18 21:09:35,541 | INFO     | sum of square deviations: 20598749010.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,542 | INFO     | sum of deviations: 291753763563.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,542 | INFO     | mean x: 1763487495.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,542 | INFO     | mean y: 2399811.8049382716
[2025-11-18 22:10:08] 2025-11-18 21:09:35,542 | INFO     | intersect: -24975044857.90596
[2025-11-18 22:10:08] 2025-11-18 21:09:35,543 | INFO     | chi2: 3.075994919972304
[2025-11-18 22:10:08] 2025-11-18 21:09:35,543 | INFO     | current chi2=3.075994919972304 (change=32.267357925340335 %)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,543 | INFO     | sum of square deviations: 19845209300.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,544 | INFO     | sum of deviations: 285463050173.99994
[2025-11-18 22:10:08] 2025-11-18 21:09:35,544 | INFO     | mean x: 1763487342.5
[2025-11-18 22:10:08] 2025-11-18 21:09:35,544 | INFO     | mean y: 2398539.405
[2025-11-18 22:10:08] 2025-11-18 21:09:35,544 | INFO     | intersect: -25364452881.6728
[2025-11-18 22:10:08] 2025-11-18 21:09:35,545 | INFO     | chi2: 3.074962298910311
[2025-11-18 22:10:08] 2025-11-18 21:09:35,545 | INFO     | current chi2=3.074962298910311 (change=0.03357031103296374 %)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,545 | INFO     | right removable region: 399
[2025-11-18 22:10:08] 2025-11-18 21:09:35,545 | INFO     | sum of square deviations: 20598749010.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,546 | INFO     | sum of deviations: 124003012165.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,546 | INFO     | mean x: 1763487800.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,546 | INFO     | mean y: 2407435.2567901234
[2025-11-18 22:10:08] 2025-11-18 21:09:35,546 | INFO     | intersect: -10613664395.613539
[2025-11-18 22:10:08] 2025-11-18 21:09:35,547 | INFO     | chi2: 2.051767542586988
[2025-11-18 22:10:08] 2025-11-18 21:09:35,547 | INFO     | current chi2=2.051767542586988 (change=54.820589695999956 %)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,547 | INFO     | sum of square deviations: 19845209300.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,548 | INFO     | sum of deviations: 84226114718.99995
[2025-11-18 22:10:08] 2025-11-18 21:09:35,548 | INFO     | mean x: 1763487952.5
[2025-11-18 22:10:08] 2025-11-18 21:09:35,548 | INFO     | mean y: 2415448.52
[2025-11-18 22:10:08] 2025-11-18 21:09:35,548 | INFO     | intersect: -7482098135.96708
[2025-11-18 22:10:08] 2025-11-18 21:09:35,549 | INFO     | chi2: 1.565653100536615
[2025-11-18 22:10:08] 2025-11-18 21:09:35,549 | INFO     | current chi2=1.565653100536615 (change=23.692471586593662 %)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,549 | INFO     | left removable region: 20
[2025-11-18 22:10:08] 2025-11-18 21:09:35,549 | INFO     | sum of square deviations: 16880800230.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,550 | INFO     | sum of deviations: 121677794583.99998
[2025-11-18 22:10:08] 2025-11-18 21:09:35,550 | INFO     | mean x: 1763487922.0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,550 | INFO     | mean y: 2432686.1583113456
[2025-11-18 22:10:08] 2025-11-18 21:09:35,550 | INFO     | intersect: -12708891315.125778
[2025-11-18 22:10:08] 2025-11-18 21:09:35,550 | INFO     | chi2: 0.06375268230132639
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | current memory leak: 7.21 B/s (using 379 data points, chi2=0.06)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | could have reported an average CPU frequency of 3858 MHz (17 samples)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | ..............................
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | . Timing measurements:
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | . get job = 0 s
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | . initial setup = 1 s
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | . payload setup = 4 s
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | . stage-in = 0 s
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | . payload execution = 24993 s
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | . stage-out = 1 s
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | . log creation = 0 s
[2025-11-18 22:10:08] 2025-11-18 21:09:35,551 | INFO     | ..............................
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | 
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | job summary report
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | --------------------------------------------------
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | PanDA job id: 6891106296
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | task id: 47483661
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | errors: (none)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | pilot state: finished 
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | transexitcode: 0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | exeerrorcode: 0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | exeerrordiag: 
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | exitcode: 0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | exitmsg: OK
[2025-11-18 22:10:08] 2025-11-18 21:09:35,591 | INFO     | cpuconsumptiontime: 97894 s
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | nevents: 1000
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | neventsw: 0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | pid: 1238528
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | pgrp: 1238528
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | corecount: 4
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | event service: False
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | sizes: {0: 2297203, 4: 2297465, 11: 2297493, 25000: 2333230, 25001: 2333229, 25004: 2342285, 25007: 2342469, 25011: 2342779}
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | --------------------------------------------------
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | 
[2025-11-18 22:10:08] 2025-11-18 21:09:35,592 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,610 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,611 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 22:10:08] 2025-11-18 21:09:35,611 | INFO     | job 6891106296 has completed (purged errors)
[2025-11-18 22:10:08] 2025-11-18 21:09:35,611 | INFO     | overall cleanup function is called
[2025-11-18 22:10:08] 2025-11-18 21:09:36,620 | INFO     | --- collectZombieJob: --- 10, [1238528]
[2025-11-18 22:10:08] 2025-11-18 21:09:36,621 | INFO     | zombie collector waiting for pid 1238528
[2025-11-18 22:10:08] 2025-11-18 21:09:36,621 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 22:10:08] 2025-11-18 21:09:36,621 | INFO     | collected zombie processes
[2025-11-18 22:10:08] 2025-11-18 21:09:36,621 | INFO     | will attempt to kill all subprocesses of pid=1238528
[2025-11-18 22:10:08] 2025-11-18 21:09:36,665 | INFO     | process IDs to be killed: [1238528] (in reverse order)
[2025-11-18 22:10:08] 2025-11-18 21:09:36,699 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 22:10:08] 2025-11-18 21:09:36,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 22:10:08] 2025-11-18 21:09:36,701 | INFO     | did not find any defunct processes belonging to 1238528
[2025-11-18 22:10:08] 2025-11-18 21:09:36,702 | INFO     | did not find any defunct processes belonging to 1238528
[2025-11-18 22:10:08] 2025-11-18 21:09:36,703 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 22:10:08] 2025-11-18 21:09:36,703 | INFO     | ready for new job
[2025-11-18 22:10:08] 2025-11-18 21:09:36,703 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 22:10:08] 2025-11-18 21:09:36,704 | INFO     | ***************************************
[2025-11-18 22:10:08] 2025-11-18 21:09:36,704 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 22:10:08] 2025-11-18 21:09:36,704 | INFO     | ***************************************
[2025-11-18 22:10:08] 2025-11-18 21:09:36,704 | INFO     | 
[2025-11-18 22:10:08] 2025-11-18 21:09:36,705 | INFO     | architecture information:
[2025-11-18 22:10:08] 2025-11-18 21:09:36,705 | INFO     | executing command: cat /etc/os-release
[2025-11-18 22:10:08] 2025-11-18 21:09:36,719 | INFO     | cat /etc/os-release:
[2025-11-18 22:10:08] NAME="CentOS Linux"
[2025-11-18 22:10:08] VERSION="7 (Core)"
[2025-11-18 22:10:08] ID="centos"
[2025-11-18 22:10:08] ID_LIKE="rhel fedora"
[2025-11-18 22:10:08] VERSION_ID="7"
[2025-11-18 22:10:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 22:10:08] ANSI_COLOR="0;31"
[2025-11-18 22:10:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 22:10:08] HOME_URL="https://www.centos.org/"
[2025-11-18 22:10:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 22:10:08] 
[2025-11-18 22:10:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 22:10:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 22:10:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 22:10:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 22:10:08] 
[2025-11-18 22:10:08] 2025-11-18 21:09:36,719 | INFO     | ***************************************
[2025-11-18 22:10:08] 2025-11-18 21:09:37,223 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-18 22:10:08] 2025-11-18 21:09:37,240 | INFO     | sufficient remaining disk space (326542295040 B)
[2025-11-18 22:10:08] 2025-11-18 21:09:37,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 22:10:08] 2025-11-18 21:09:37,241 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 22:10:08] 2025-11-18 21:09:37,241 | INFO     | update_server=False
[2025-11-18 22:10:08] 2025-11-18 21:09:37,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 22:10:08] 2025-11-18 21:09:37,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 22:10:08] 2025-11-18 21:09:37,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 22:10:08] 2025-11-18 21:09:37,241 | INFO     | aborting loop
[2025-11-18 22:10:08] 2025-11-18 21:09:37,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 22:10:08] 2025-11-18 21:09:37,693 | INFO     | all data control threads have been joined
[2025-11-18 22:10:08] 2025-11-18 21:09:37,816 | INFO     | all payload control threads have been joined
[2025-11-18 22:10:08] 2025-11-18 21:09:37,923 | INFO     | all job control threads have been joined
[2025-11-18 22:10:08] 2025-11-18 21:09:38,246 | INFO     | [job] retrieve thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,247 | INFO     | [job] queue monitor thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,247 | INFO     | [job] job monitor thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,638 | INFO     | [job] validate thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 22:10:08] 2025-11-18 21:09:38,699 | INFO     | [data] control thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,738 | INFO     | [payload] failed_post thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,786 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,822 | INFO     | [payload] control thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,823 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,837 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:38,929 | INFO     | [job] control thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:39,278 | INFO     | [payload] validate_post thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:39,372 | INFO     | [data] copytool_in thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:39,593 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:40,647 | INFO     | [data] copytool_out thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:09:41,421 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 22:10:08] 2025-11-18 21:10:02,124 | INFO     | [monitor] cgroup control has ended
[2025-11-18 22:10:08] 2025-11-18 21:10:03,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140196045485888)>', '<ExcThread(monitor, started 140195030619904)>']
[2025-11-18 22:10:08] 2025-11-18 21:10:06,876 | INFO     | PID=1231954 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 22:10:08] 2025-11-18 21:10:06,876 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 22:10:08] 2025-11-18 21:10:06,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 22:10:08] 2025-11-18 21:10:06,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 22:10:08] 2025-11-18 21:10:06,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 22:10:08] 2025-11-18 21:10:06,876 | INFO     | [monitor] control thread has ended
[2025-11-18 22:10:08] 2025-11-18 21:10:08,088 | INFO     | all workflow threads have been joined
[2025-11-18 22:10:08] 2025-11-18 21:10:08,088 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 22:10:08] 2025-11-18 21:10:08,089 | INFO     | traces error code: 0
[2025-11-18 22:10:08] 2025-11-18 21:10:08,089 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 22:10:08] 2025-11-18 21:10:08,171 [wrapper] ==== pilot stdout END ====
[2025-11-18 22:10:08] 2025-11-18 21:10:08,175 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 22:10:08] 2025-11-18 21:10:08,179 [wrapper] pilotpid: 1231954
[2025-11-18 22:10:08] 2025-11-18 21:10:08,183 [wrapper] Pilot exit status: 0
[2025-11-18 22:10:08] 2025-11-18 21:10:08,194 [wrapper] pandaids: 6891106296
[2025-11-18 22:10:08] 2025-11-18 21:10:08,218 [wrapper] cleanup supervisor_pilot 1282831 1231955
[2025-11-18 22:10:08] 2025-11-18 21:10:08,222 [wrapper] Test setup, not cleaning
[2025-11-18 22:10:08] 2025-11-18 21:10:08,226 [wrapper] apfmon messages muted
[2025-11-18 22:10:08] 2025-11-18 21:10:08,230 [wrapper] ==== wrapper stdout END ====
[2025-11-18 22:10:08] 2025-11-18 21:10:08,235 [wrapper] ==== wrapper stderr END ====
[2025-11-18 22:10:08]  *** Error codes and diagnostics ***
[2025-11-18 22:10:08]     "exeErrorCode": 0,
[2025-11-18 22:10:08]     "exeErrorDiag": "",
[2025-11-18 22:10:08]     "pilotErrorCode": 0,
[2025-11-18 22:10:08]     "pilotErrorDiag": "",
[2025-11-18 22:10:08]  *** Listing of results directory ***
[2025-11-18 22:10:08] total 1317092
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc    576529 Nov 18 07:54 pilot3.tar.gz
[2025-11-18 22:10:08] -rwx------ 1 boinc boinc     36292 Nov 18 07:57 runpilot2-wrapper.sh
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc      5112 Nov 18 07:57 queuedata.json
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc       100 Nov 18 15:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 22:10:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 18 15:12 run_atlas
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc       105 Nov 18 15:12 job.xml
[2025-11-18 22:10:08] -rw-r--r-- 2 boinc boinc 411737588 Nov 18 15:12 EVNT.47483658._000255.pool.root.1
[2025-11-18 22:10:08] drwxrwx--x 2 boinc boinc      4096 Nov 18 15:12 shared
[2025-11-18 22:10:08] -rw-r--r-- 2 boinc boinc    590103 Nov 18 15:12 input.tar.gz
[2025-11-18 22:10:08] -rw-r--r-- 2 boinc boinc     15120 Nov 18 15:12 start_atlas.sh
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc         0 Nov 18 15:12 boinc_setup_complete
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc      6377 Nov 18 15:12 init_data.xml
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc         0 Nov 18 15:12 boinc_lockfile
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc      2773 Nov 18 15:12 pandaJob.out
[2025-11-18 22:10:08] -rw------- 1 boinc boinc    992766 Nov 18 15:12 agis_schedconf.cvmfs.json
[2025-11-18 22:10:08] drwx------ 5 boinc boinc      4096 Nov 18 15:12 pilot3
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc       531 Nov 18 22:05 boinc_task_state.xml
[2025-11-18 22:10:08] -rw------- 1 boinc boinc 923479164 Nov 18 22:09 HITS.47483661._002250.pool.root.1
[2025-11-18 22:10:08] -rw------- 1 boinc boinc      1029 Nov 18 22:09 memory_monitor_summary.json
[2025-11-18 22:10:08] -rw------- 1 boinc boinc   1525063 Nov 18 22:09 agis_ddmendpoints.agis.ALL.json
[2025-11-18 22:10:08] -rw------- 1 boinc boinc   1253301 Nov 18 22:09 log.47483661._002250.job.log.tgz.1
[2025-11-18 22:10:08] -rw------- 1 boinc boinc      7906 Nov 18 22:09 heartbeat.json
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc      8192 Nov 18 22:09 boinc_mmap_file
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc        28 Nov 18 22:09 wrapper_checkpoint.txt
[2025-11-18 22:10:08] -rw------- 1 boinc boinc        95 Nov 18 22:10 pilot_heartbeat.json
[2025-11-18 22:10:08] -rw------- 1 boinc boinc      4752 Nov 18 22:10 pilotlog.txt
[2025-11-18 22:10:08] -rw------- 1 boinc boinc   3530317 Nov 18 22:10 log.47483661._002250.job.log.1
[2025-11-18 22:10:08] -rw------- 1 boinc boinc       353 Nov 18 22:10 output.list
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc       620 Nov 18 22:10 runtime_log
[2025-11-18 22:10:08] -rw------- 1 boinc boinc   4802560 Nov 18 22:10 result.tar.gz
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc      8788 Nov 18 22:10 runtime_log.err
[2025-11-18 22:10:08] -rw------- 1 boinc boinc       667 Nov 18 22:10 rqTKDmLpUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7MKODmGTcd8m.diag
[2025-11-18 22:10:08] -rw-r--r-- 1 boinc boinc     21280 Nov 18 22:10 stderr.txt
[2025-11-18 22:10:08] HITS file was successfully produced:
[2025-11-18 22:10:08] -rw------- 1 boinc boinc 923479164 Nov 18 22:09 shared/HITS.pool.root.1
[2025-11-18 22:10:08]  *** Contents of shared directory: ***
[2025-11-18 22:10:08] total 1309220
[2025-11-18 22:10:08] -rw-r--r-- 2 boinc boinc 411737588 Nov 18 15:12 ATLAS.root_0
[2025-11-18 22:10:08] -rw-r--r-- 2 boinc boinc    590103 Nov 18 15:12 input.tar.gz
[2025-11-18 22:10:08] -rw-r--r-- 2 boinc boinc     15120 Nov 18 15:12 start_atlas.sh
[2025-11-18 22:10:08] -rw------- 1 boinc boinc 923479164 Nov 18 22:09 HITS.pool.root.1
[2025-11-18 22:10:08] -rw------- 1 boinc boinc   4802560 Nov 18 22:10 result.tar.gz
22:10:10 (1228172): run_atlas exited; CPU time 97873.525302
22:10:10 (1228172): called boinc_finish(0)

</stderr_txt>
]]>

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