Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:04:49 (6119): wrapper (7.7.26015): starting
12:04:49 (6119): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 12:04:49] Arguments: --nthreads 8
[2025-11-20 12:04:49] Threads: 8
[2025-11-20 12:04:49] Checking for CVMFS
[2025-11-20 12:04:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 12:04:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 12:04:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 12:04:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 12:04:52] 2.11.2.0 24698 163452 148616 153078 0 294 21891369 25165825 4204 130560 10 55803665 99.899 27447868 2288 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 12:04:52] CVMFS is ok
[2025-11-20 12:04:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 12:04:52] Checking for apptainer binary...
[2025-11-20 12:04:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 12:04:52] Running /usr/bin/apptainer --version
[2025-11-20 12:04:52] apptainer version 1.3.2-1.el7
[2025-11-20 12:04:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 12:04:55] cg-vwn342.simple-grid.lan
[2025-11-20 12:04:55] apptainer works
[2025-11-20 12:04:55] Set ATHENA_PROC_NUMBER=8
[2025-11-20 12:04:55] Set ATHENA_CORE_NUMBER=8
[2025-11-20 12:04:55] Starting ATLAS job with PandaID=6891106799
[2025-11-20 12:04:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 13:36:11]  *** The last 200 lines of the pilot log: ***
[2025-11-21 13:36:11] 2025-11-21 12:35:18,059 | INFO     | monitor loop #6169: job 0:6891106799 is in state 'finished'
[2025-11-21 13:36:11] 2025-11-21 12:35:18,059 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 13:36:11] 2025-11-21 12:35:18,217 | INFO     | time since job start (91616s) is within the limit (172800.0s)
[2025-11-21 13:36:11] 2025-11-21 12:35:20,224 | INFO     | time since job start (91618s) is within the limit (172800.0s)
[2025-11-21 13:36:11] 2025-11-21 12:35:20,224 | INFO     | 91621s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 13:36:11] 2025-11-21 12:35:20,565 | INFO     | monitor loop #6170: job 0:6891106799 is in state 'finished'
[2025-11-21 13:36:11] 2025-11-21 12:35:20,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 13:36:11] 2025-11-21 12:35:22,235 | INFO     | time since job start (91620s) is within the limit (172800.0s)
[2025-11-21 13:36:11] 2025-11-21 12:35:23,070 | INFO     | monitor loop #6171: job 0:6891106799 is in state 'finished'
[2025-11-21 13:36:11] 2025-11-21 12:35:23,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 13:36:11] 2025-11-21 12:35:24,242 | INFO     | time since job start (91622s) is within the limit (172800.0s)
[2025-11-21 13:36:11] 2025-11-21 12:35:25,581 | INFO     | monitor loop #6172: job 0:6891106799 is in state 'finished'
[2025-11-21 13:36:11] 2025-11-21 12:35:25,581 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 13:36:11] 2025-11-21 12:35:26,252 | INFO     | time since job start (91624s) is within the limit (172800.0s)
[2025-11-21 13:36:11] 2025-11-21 12:35:26,564 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 13:36:11] 2025-11-21 12:35:26,566 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 13:36:11] 2025-11-21 12:35:26,567 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6891106799/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 13:36:11] 2025-11-21 12:35:26,568 | INFO     | extracted standard info from prmon json
[2025-11-21 13:36:11] 2025-11-21 12:35:26,568 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 13:36:11] 2025-11-21 12:35:26,568 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 13:36:11] 2025-11-21 12:35:26,598 | INFO     | fitting pss+swap vs Time
[2025-11-21 13:36:11] 2025-11-21 12:35:26,600 | INFO     | sum of square deviations: 1031951844477.7308
[2025-11-21 13:36:11] 2025-11-21 12:35:26,677 | INFO     | sum of deviations: 4319799167316.108
[2025-11-21 13:36:11] 2025-11-21 12:35:26,677 | INFO     | mean x: 1763682902.2873409
[2025-11-21 13:36:11] 2025-11-21 12:35:26,677 | INFO     | mean y: 2839302.7736101807
[2025-11-21 13:36:11] 2025-11-21 12:35:26,677 | INFO     | intersect: -7380020637.329846
[2025-11-21 13:36:11] 2025-11-21 12:35:26,679 | INFO     | chi2: 23.295296717392823
[2025-11-21 13:36:11] 2025-11-21 12:35:26,681 | INFO     | sum of square deviations: 1021619250889.4172
[2025-11-21 13:36:11] 2025-11-21 12:35:26,750 | INFO     | sum of deviations: 4813973073031.375
[2025-11-21 13:36:11] 2025-11-21 12:35:26,750 | INFO     | mean x: 1763682749.7916667
[2025-11-21 13:36:11] 2025-11-21 12:35:26,751 | INFO     | mean y: 2846595.1108870967
[2025-11-21 13:36:11] 2025-11-21 12:35:26,751 | INFO     | intersect: -8307804618.122789
[2025-11-21 13:36:11] 2025-11-21 12:35:26,753 | INFO     | chi2: 20.140890109629346
[2025-11-21 13:36:11] 2025-11-21 12:35:26,753 | INFO     | current chi2=20.140890109629346 (change=13.5409591302107 %)
[2025-11-21 13:36:11] 2025-11-21 12:35:26,753 | INFO     | right removable region: 1487
[2025-11-21 13:36:11] 2025-11-21 12:35:26,755 | INFO     | sum of square deviations: 1021618078469.4176
[2025-11-21 13:36:11] 2025-11-21 12:35:26,827 | INFO     | sum of deviations: 3701535307540.417
[2025-11-21 13:36:11] 2025-11-21 12:35:26,827 | INFO     | mean x: 1763683054.7916667
[2025-11-21 13:36:11] 2025-11-21 12:35:26,827 | INFO     | mean y: 2848426.24327957
[2025-11-21 13:36:11] 2025-11-21 12:35:26,828 | INFO     | intersect: -6387343012.423124
[2025-11-21 13:36:11] 2025-11-21 12:35:26,829 | INFO     | chi2: 18.626096208113474
[2025-11-21 13:36:11] 2025-11-21 12:35:26,829 | INFO     | current chi2=18.626096208113474 (change=20.04353310423049 %)
[2025-11-21 13:36:11] 2025-11-21 12:35:26,830 | INFO     | left removable region: 10
[2025-11-21 13:36:11] 2025-11-21 12:35:26,832 | INFO     | sum of square deviations: 999128494018.9276
[2025-11-21 13:36:11] 2025-11-21 12:35:26,895 | INFO     | sum of deviations: 3784017465039.5146
[2025-11-21 13:36:11] 2025-11-21 12:35:26,896 | INFO     | mean x: 1763683024.3012865
[2025-11-21 13:36:11] 2025-11-21 12:35:26,896 | INFO     | mean y: 2865647.94041977
[2025-11-21 13:36:11] 2025-11-21 12:35:26,896 | INFO     | intersect: -6676763055.175467
[2025-11-21 13:36:11] 2025-11-21 12:35:26,898 | INFO     | chi2: 11.070431197612667
[2025-11-21 13:36:11] 2025-11-21 12:35:26,898 | INFO     | current memory leak: 3.79 B/s (using 1477 data points, chi2=11.07)
[2025-11-21 13:36:11] 2025-11-21 12:35:26,900 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-21 13:36:11] 2025-11-21 12:35:26,901 | INFO     | ..............................
[2025-11-21 13:36:11] 2025-11-21 12:35:26,901 | INFO     | . Timing measurements:
[2025-11-21 13:36:11] 2025-11-21 12:35:26,901 | INFO     | . get job = 0 s
[2025-11-21 13:36:11] 2025-11-21 12:35:26,901 | INFO     | . initial setup = 3 s
[2025-11-21 13:36:11] 2025-11-21 12:35:26,901 | INFO     | . payload setup = 148 s
[2025-11-21 13:36:11] 2025-11-21 12:35:26,901 | INFO     | . stage-in = 0 s
[2025-11-21 13:36:11] 2025-11-21 12:35:26,901 | INFO     | . payload execution = 91184 s
[2025-11-21 13:36:11] 2025-11-21 12:35:26,901 | INFO     | . stage-out = 5 s
[2025-11-21 13:36:11] 2025-11-21 12:35:26,902 | INFO     | . log creation = 2 s
[2025-11-21 13:36:11] 2025-11-21 12:35:26,902 | INFO     | ..............................
[2025-11-21 13:36:11] 2025-11-21 12:35:27,292 | INFO     | 
[2025-11-21 13:36:11] 2025-11-21 12:35:27,293 | INFO     | job summary report
[2025-11-21 13:36:11] 2025-11-21 12:35:27,293 | INFO     | --------------------------------------------------
[2025-11-21 13:36:11] 2025-11-21 12:35:27,293 | INFO     | PanDA job id: 6891106799
[2025-11-21 13:36:11] 2025-11-21 12:35:27,293 | INFO     | task id: 47483661
[2025-11-21 13:36:11] 2025-11-21 12:35:27,293 | INFO     | errors: (none)
[2025-11-21 13:36:11] 2025-11-21 12:35:27,293 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | pilot state: finished 
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | transexitcode: 0
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | exeerrorcode: 0
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | exeerrordiag: 
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | exitcode: 0
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | exitmsg: OK
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | cpuconsumptiontime: 331052 s
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | nevents: 1000
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | neventsw: 0
[2025-11-21 13:36:11] 2025-11-21 12:35:27,294 | INFO     | pid: 16508
[2025-11-21 13:36:11] 2025-11-21 12:35:27,295 | INFO     | pgrp: 16508
[2025-11-21 13:36:11] 2025-11-21 12:35:27,295 | INFO     | corecount: 8
[2025-11-21 13:36:11] 2025-11-21 12:35:27,295 | INFO     | event service: False
[2025-11-21 13:36:11] 2025-11-21 12:35:27,295 | INFO     | sizes: {0: 2296372, 1: 2297228, 2: 2297228, 12: 2297256, 23: 2297284, 34: 2297312, 45: 2297468, 55: 2297496, 66: 2297524, 77: 2297552, 88: 2297608, 95: 2298178, 99
[2025-11-21 13:36:11] 2025-11-21 12:35:27,295 | INFO     | --------------------------------------------------
[2025-11-21 13:36:11] 2025-11-21 12:35:27,295 | INFO     | 
[2025-11-21 13:36:11] 2025-11-21 12:35:27,295 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-21 13:36:11] 2025-11-21 12:35:27,824 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,824 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,825 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,825 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,825 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,825 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,825 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,825 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,825 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,825 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,825 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,826 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,826 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,826 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,826 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,826 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,826 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,826 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 13:36:11] 2025-11-21 12:35:27,826 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,826 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 13:36:11] 2025-11-21 12:35:27,827 | INFO     | job 6891106799 has completed (purged errors)
[2025-11-21 13:36:11] 2025-11-21 12:35:27,827 | INFO     | overall cleanup function is called
[2025-11-21 13:36:11] 2025-11-21 12:35:28,847 | INFO     | --- collectZombieJob: --- 10, [16508]
[2025-11-21 13:36:11] 2025-11-21 12:35:28,848 | INFO     | zombie collector waiting for pid 16508
[2025-11-21 13:36:11] 2025-11-21 12:35:28,848 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 13:36:11] 2025-11-21 12:35:28,848 | INFO     | collected zombie processes
[2025-11-21 13:36:11] 2025-11-21 12:35:28,848 | INFO     | will attempt to kill all subprocesses of pid=16508
[2025-11-21 13:36:11] 2025-11-21 12:35:28,962 | INFO     | process IDs to be killed: [16508] (in reverse order)
[2025-11-21 13:36:11] 2025-11-21 12:35:29,502 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 13:36:11] 2025-11-21 12:35:29,503 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 13:36:11] 2025-11-21 12:35:29,506 | INFO     | did not find any defunct processes belonging to 16508
[2025-11-21 13:36:11] 2025-11-21 12:35:29,513 | INFO     | did not find any defunct processes belonging to 16508
[2025-11-21 13:36:11] 2025-11-21 12:35:29,551 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 13:36:11] 2025-11-21 12:35:29,551 | INFO     | ready for new job
[2025-11-21 13:36:11] 2025-11-21 12:35:29,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 13:36:11] 2025-11-21 12:35:29,559 | INFO     | ***************************************
[2025-11-21 13:36:11] 2025-11-21 12:35:29,559 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 13:36:11] 2025-11-21 12:35:29,559 | INFO     | ***************************************
[2025-11-21 13:36:11] 2025-11-21 12:35:29,559 | INFO     | 
[2025-11-21 13:36:11] 2025-11-21 12:35:29,560 | INFO     | pilot is running in a VM
[2025-11-21 13:36:11] 2025-11-21 12:35:29,560 | INFO     | architecture information:
[2025-11-21 13:36:11] 2025-11-21 12:35:29,570 | INFO     | executing command: cat /etc/os-release
[2025-11-21 13:36:11] 2025-11-21 12:35:29,802 | INFO     | cat /etc/os-release:
[2025-11-21 13:36:11] NAME="CentOS Linux"
[2025-11-21 13:36:11] VERSION="7 (Core)"
[2025-11-21 13:36:11] ID="centos"
[2025-11-21 13:36:11] ID_LIKE="rhel fedora"
[2025-11-21 13:36:11] VERSION_ID="7"
[2025-11-21 13:36:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 13:36:11] ANSI_COLOR="0;31"
[2025-11-21 13:36:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 13:36:11] HOME_URL="https://www.centos.org/"
[2025-11-21 13:36:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 13:36:11] 
[2025-11-21 13:36:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 13:36:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 13:36:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 13:36:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 13:36:11] 
[2025-11-21 13:36:11] 2025-11-21 12:35:29,802 | INFO     | ***************************************
[2025-11-21 13:36:11] 2025-11-21 12:35:30,306 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-21 13:36:11] 2025-11-21 12:35:30,446 | INFO     | sufficient remaining disk space (493962133504 B)
[2025-11-21 13:36:11] 2025-11-21 12:35:30,446 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 13:36:11] 2025-11-21 12:35:30,446 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 13:36:11] 2025-11-21 12:35:30,447 | INFO     | update_server=False
[2025-11-21 13:36:11] 2025-11-21 12:35:30,447 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 13:36:11] 2025-11-21 12:35:30,447 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 13:36:11] 2025-11-21 12:35:30,447 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 13:36:11] 2025-11-21 12:35:30,631 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 13:36:11] 2025-11-21 12:35:30,632 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 13:36:11] 2025-11-21 12:35:30,632 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:36:11] 2025-11-21 12:35:30,632 | INFO     | will abort loop
[2025-11-21 13:36:11] 2025-11-21 12:35:31,299 | INFO     | all payload control threads have been joined
[2025-11-21 13:36:11] 2025-11-21 12:35:31,327 | INFO     | all data control threads have been joined
[2025-11-21 13:36:11] 2025-11-21 12:35:31,334 | INFO     | all job control threads have been joined
[2025-11-21 13:36:11] 2025-11-21 12:35:31,453 | INFO     | [job] retrieve thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:31,563 | INFO     | [payload] failed_post thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:31,573 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:31,638 | INFO     | [job] job monitor thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,033 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 13:36:11] 2025-11-21 12:35:32,307 | INFO     | [payload] control thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,334 | INFO     | [data] control thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,341 | INFO     | [job] control thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,454 | INFO     | [data] copytool_out thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,556 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,780 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,828 | INFO     | [job] validate thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,855 | INFO     | [data] copytool_in thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:32,997 | INFO     | [payload] validate_post thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:33,048 | INFO     | [job] queue monitor thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:34,456 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 13:36:11] 2025-11-21 12:35:59,470 | INFO     | PID=9932 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 13:36:11] 2025-11-21 12:35:59,471 | INFO     | .. there are 9 such processes running
[2025-11-21 13:36:11] 2025-11-21 12:35:59,471 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 13:36:11] 2025-11-21 12:35:59,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 13:36:11] 2025-11-21 12:35:59,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 13:36:11] 2025-11-21 12:36:01,979 | INFO     | [monitor] cgroup control has ended
[2025-11-21 13:36:11] 2025-11-21 12:36:02,174 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140624478025536)>', '<ExcThread(monitor, started 140624024016640)>']
[2025-11-21 13:36:11] 2025-11-21 12:36:02,488 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 13:36:11] 2025-11-21 12:36:02,489 | INFO     | [monitor] control thread has ended
[2025-11-21 13:36:11] 2025-11-21 12:36:07,199 | INFO     | all workflow threads have been joined
[2025-11-21 13:36:11] 2025-11-21 12:36:07,200 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 13:36:11] 2025-11-21 12:36:07,200 | INFO     | traces error code: 0
[2025-11-21 13:36:11] 2025-11-21 12:36:07,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 13:36:11] 2025-11-21 12:36:07,684 [wrapper] ==== pilot stdout END ====
[2025-11-21 13:36:11] 2025-11-21 12:36:07,798 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 13:36:11] 2025-11-21 12:36:07,845 [wrapper] pilotpid: 9932
[2025-11-21 13:36:11] 2025-11-21 12:36:07,930 [wrapper] Pilot exit status: 0
[2025-11-21 13:36:11] 2025-11-21 12:36:08,257 [wrapper] pandaids: 6891106799
[2025-11-21 13:36:11] 2025-11-21 12:36:08,961 [wrapper] cleanup supervisor_pilot 25593 9933
[2025-11-21 13:36:11] 2025-11-21 12:36:09,006 [wrapper] Test setup, not cleaning
[2025-11-21 13:36:11] 2025-11-21 12:36:09,067 [wrapper] apfmon messages muted
[2025-11-21 13:36:11] 2025-11-21 12:36:09,107 [wrapper] ==== wrapper stdout END ====
[2025-11-21 13:36:11] 2025-11-21 12:36:09,189 [wrapper] ==== wrapper stderr END ====
[2025-11-21 13:36:11]  *** Error codes and diagnostics ***
[2025-11-21 13:36:11]     "exeErrorCode": 0,
[2025-11-21 13:36:11]     "exeErrorDiag": "",
[2025-11-21 13:36:11]     "pilotErrorCode": 0,
[2025-11-21 13:36:11]     "pilotErrorDiag": "",
[2025-11-21 13:36:11]  *** Listing of results directory ***
[2025-11-21 13:36:11] total 1314128
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc    576529 Nov 18 07:54 pilot3.tar.gz
[2025-11-21 13:36:11] -rwx------. 1 boinc boinc     36292 Nov 18 07:58 runpilot2-wrapper.sh
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc      5112 Nov 18 07:58 queuedata.json
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc       100 Nov 20 12:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 13:36:11] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 12:04 run_atlas
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc       105 Nov 20 12:04 job.xml
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc      6390 Nov 20 12:04 init_data.xml
[2025-11-21 13:36:11] -rw-r--r--. 2 boinc boinc 410074213 Nov 20 12:04 EVNT.47483658._000278.pool.root.1
[2025-11-21 13:36:11] -rw-r--r--. 2 boinc boinc     15120 Nov 20 12:04 start_atlas.sh
[2025-11-21 13:36:11] drwxrwx--x. 2 boinc boinc        68 Nov 20 12:04 shared
[2025-11-21 13:36:11] -rw-r--r--. 2 boinc boinc    590105 Nov 20 12:04 input.tar.gz
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc         0 Nov 20 12:04 boinc_lockfile
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc      2773 Nov 20 12:04 pandaJob.out
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc    989443 Nov 20 12:08 agis_schedconf.cvmfs.json
[2025-11-21 13:36:11] drwx------. 5 boinc boinc      4096 Nov 20 12:08 pilot3
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc       533 Nov 21 13:12 boinc_task_state.xml
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc 902088980 Nov 21 13:32 HITS.47483661._002477.pool.root.1
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc      1034 Nov 21 13:33 memory_monitor_summary.json
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc   1526164 Nov 21 13:33 agis_ddmendpoints.agis.ALL.json
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc   2560605 Nov 21 13:33 log.47483661._002477.job.log.tgz.1
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc        95 Nov 21 13:35 pilot_heartbeat.json
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc      8628 Nov 21 13:35 heartbeat.json
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc      8192 Nov 21 13:36 boinc_mmap_file
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc        29 Nov 21 13:36 wrapper_checkpoint.txt
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc      5069 Nov 21 13:36 pilotlog.txt
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc  12237443 Nov 21 13:36 log.47483661._002477.job.log.1
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc       353 Nov 21 13:36 output.list
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc       620 Nov 21 13:36 runtime_log
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc  14817280 Nov 21 13:36 result.tar.gz
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc      8703 Nov 21 13:36 runtime_log.err
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc       662 Nov 21 13:36 MKOMDmgqUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmx7qMDm8UQR2m.diag
[2025-11-21 13:36:11] -rw-r--r--. 1 boinc boinc     21428 Nov 21 13:36 stderr.txt
[2025-11-21 13:36:11] HITS file was successfully produced:
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc 902088980 Nov 21 13:32 shared/HITS.pool.root.1
[2025-11-21 13:36:11]  *** Contents of shared directory: ***
[2025-11-21 13:36:11] total 1296480
[2025-11-21 13:36:11] -rw-r--r--. 2 boinc boinc 410074213 Nov 20 12:04 ATLAS.root_0
[2025-11-21 13:36:11] -rw-r--r--. 2 boinc boinc     15120 Nov 20 12:04 start_atlas.sh
[2025-11-21 13:36:11] -rw-r--r--. 2 boinc boinc    590105 Nov 20 12:04 input.tar.gz
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc 902088980 Nov 21 13:32 HITS.pool.root.1
[2025-11-21 13:36:11] -rw-------. 1 boinc boinc  14817280 Nov 21 13:36 result.tar.gz
13:36:12 (6119): run_atlas exited; CPU time 331639.708010
13:36:12 (6119): called boinc_finish(0)

</stderr_txt>
]]>

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