Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:35:40 (31758): wrapper (7.7.26015): starting
05:35:40 (31758): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:35:40] Arguments: --nthreads 8
[2025-11-20 05:35:40] Threads: 8
[2025-11-20 05:35:40] Checking for CVMFS
[2025-11-20 05:35:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:35:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:35:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:35:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:35:42] 2.11.2.0 15981 181227 138460 153067 0 198 14531598 25165825 3507 130560 4 63132672 99.884 32435967 2643 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 05:35:42] CVMFS is ok
[2025-11-20 05:35:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:35:42] Checking for apptainer binary...
[2025-11-20 05:35:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:35:42] Running /usr/bin/apptainer --version
[2025-11-20 05:35:43] apptainer version 1.3.2-1.el7
[2025-11-20 05:35:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:35:45] cg-vwn479.simple-grid.lan
[2025-11-20 05:35:45] apptainer works
[2025-11-20 05:35:45] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:35:45] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:35:45] Starting ATLAS job with PandaID=6891106337
[2025-11-20 05:35:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 03:43:40]  *** The last 200 lines of the pilot log: ***
[2025-11-21 03:43:40] 2025-11-21 02:42:44,454 | INFO     | sum of square deviations: 684402210515.4977
[2025-11-21 03:43:40] 2025-11-21 02:42:44,519 | INFO     | sum of deviations: 2972141562697.181
[2025-11-21 03:43:40] 2025-11-21 02:42:44,520 | INFO     | mean x: 1763653108.8325653
[2025-11-21 03:43:40] 2025-11-21 02:42:44,520 | INFO     | mean y: 2873319.179723502
[2025-11-21 03:43:40] 2025-11-21 02:42:44,520 | INFO     | intersect: -7656112327.569098
[2025-11-21 03:43:40] 2025-11-21 02:42:44,521 | INFO     | chi2: 7.371402372853996
[2025-11-21 03:43:40] 2025-11-21 02:42:44,523 | INFO     | sum of square deviations: 676548164504.087
[2025-11-21 03:43:40] 2025-11-21 02:42:44,563 | INFO     | sum of deviations: 3415371252294.9785
[2025-11-21 03:43:40] 2025-11-21 02:42:44,564 | INFO     | mean x: 1763652956.3377023
[2025-11-21 03:43:40] 2025-11-21 02:42:44,564 | INFO     | mean y: 2881924.1804163456
[2025-11-21 03:43:40] 2025-11-21 02:42:44,564 | INFO     | intersect: -8900445173.774412
[2025-11-21 03:43:40] 2025-11-21 02:42:44,565 | INFO     | chi2: 4.149996714181242
[2025-11-21 03:43:40] 2025-11-21 02:42:44,565 | INFO     | current chi2=4.149996714181242 (change=43.70139487346311 %)
[2025-11-21 03:43:40] 2025-11-21 02:42:44,567 | INFO     | sum of square deviations: 668754366333.7899
[2025-11-21 03:43:40] 2025-11-21 02:42:44,615 | INFO     | sum of deviations: 3620975158727.7866
[2025-11-21 03:43:40] 2025-11-21 02:42:44,616 | INFO     | mean x: 1763652803.8421052
[2025-11-21 03:43:40] 2025-11-21 02:42:44,616 | INFO     | mean y: 2885942.003869969
[2025-11-21 03:43:40] 2025-11-21 02:42:44,616 | INFO     | intersect: -9546424406.940317
[2025-11-21 03:43:40] 2025-11-21 02:42:44,617 | INFO     | chi2: 3.106270058923421
[2025-11-21 03:43:40] 2025-11-21 02:42:44,617 | INFO     | current chi2=3.106270058923421 (change=25.150059798631407 %)
[2025-11-21 03:43:40] 2025-11-21 02:42:44,619 | INFO     | sum of square deviations: 661020268015.8889
[2025-11-21 03:43:40] 2025-11-21 02:42:44,668 | INFO     | sum of deviations: 3614984952328.404
[2025-11-21 03:43:40] 2025-11-21 02:42:44,669 | INFO     | mean x: 1763652651.3426573
[2025-11-21 03:43:40] 2025-11-21 02:42:44,669 | INFO     | mean y: 2885822.7995337998
[2025-11-21 03:43:40] 2025-11-21 02:42:44,669 | INFO     | intersect: -9642170621.346518
[2025-11-21 03:43:40] 2025-11-21 02:42:44,670 | INFO     | chi2: 3.078956126564611
[2025-11-21 03:43:40] 2025-11-21 02:42:44,670 | INFO     | current chi2=3.078956126564611 (change=0.8793160878058558 %)
[2025-11-21 03:43:40] 2025-11-21 02:42:44,670 | INFO     | right removable region: 1286
[2025-11-21 03:43:40] 2025-11-21 02:42:44,672 | INFO     | sum of square deviations: 676547106154.0856
[2025-11-21 03:43:40] 2025-11-21 02:42:44,728 | INFO     | sum of deviations: 2556639811037.482
[2025-11-21 03:43:40] 2025-11-21 02:42:44,728 | INFO     | mean x: 1763653261.3377023
[2025-11-21 03:43:40] 2025-11-21 02:42:44,728 | INFO     | mean y: 2881381.501156515
[2025-11-21 03:43:40] 2025-11-21 02:42:44,728 | INFO     | intersect: -6661881647.985688
[2025-11-21 03:43:40] 2025-11-21 02:42:44,730 | INFO     | chi2: 4.649610846565732
[2025-11-21 03:43:40] 2025-11-21 02:42:44,730 | INFO     | current chi2=4.649610846565732 (change=36.92365968667729 %)
[2025-11-21 03:43:40] 2025-11-21 02:42:44,732 | INFO     | sum of square deviations: 668752803093.1909
[2025-11-21 03:43:40] 2025-11-21 02:42:44,779 | INFO     | sum of deviations: 2464933811093.5273
[2025-11-21 03:43:40] 2025-11-21 02:42:44,780 | INFO     | mean x: 1763653413.8382354
[2025-11-21 03:43:40] 2025-11-21 02:42:44,780 | INFO     | mean y: 2883175.547987616
[2025-11-21 03:43:40] 2025-11-21 02:42:44,780 | INFO     | intersect: -6497708538.928304
[2025-11-21 03:43:40] 2025-11-21 02:42:44,781 | INFO     | chi2: 4.589869960304446
[2025-11-21 03:43:40] 2025-11-21 02:42:44,781 | INFO     | current chi2=4.589869960304446 (change=1.2848577705252842 %)
[2025-11-21 03:43:40] 2025-11-21 02:42:44,782 | INFO     | left removable region: 20
[2025-11-21 03:43:40] 2025-11-21 02:42:44,783 | INFO     | sum of square deviations: 629187514166.965
[2025-11-21 03:43:40] 2025-11-21 02:42:44,822 | INFO     | sum of deviations: 2973153237038.047
[2025-11-21 03:43:40] 2025-11-21 02:42:44,822 | INFO     | mean x: 1763653230.8459716
[2025-11-21 03:43:40] 2025-11-21 02:42:44,822 | INFO     | mean y: 2898437.225908373
[2025-11-21 03:43:40] 2025-11-21 02:42:44,822 | INFO     | intersect: -8331042072.138418
[2025-11-21 03:43:40] 2025-11-21 02:42:44,824 | INFO     | chi2: 0.2399258447262121
[2025-11-21 03:43:40] 2025-11-21 02:42:44,824 | INFO     | current memory leak: 4.73 B/s (using 1266 data points, chi2=0.24)
[2025-11-21 03:43:40] 2025-11-21 02:42:44,826 | INFO     | could have reported an average CPU frequency of 2249 MHz (44 samples)
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | ..............................
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | . Timing measurements:
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | . get job = 0 s
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | . initial setup = 2 s
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | . payload setup = 11 s
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | . stage-in = 0 s
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | . payload execution = 79441 s
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | . stage-out = 5 s
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | . log creation = 2 s
[2025-11-21 03:43:40] 2025-11-21 02:42:44,827 | INFO     | ..............................
[2025-11-21 03:43:40] 2025-11-21 02:42:44,969 | INFO     | 
[2025-11-21 03:43:40] 2025-11-21 02:42:44,969 | INFO     | job summary report
[2025-11-21 03:43:40] 2025-11-21 02:42:44,969 | INFO     | --------------------------------------------------
[2025-11-21 03:43:40] 2025-11-21 02:42:44,969 | INFO     | PanDA job id: 6891106337
[2025-11-21 03:43:40] 2025-11-21 02:42:44,969 | INFO     | task id: 47483661
[2025-11-21 03:43:40] 2025-11-21 02:42:44,969 | INFO     | errors: (none)
[2025-11-21 03:43:40] 2025-11-21 02:42:44,969 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 03:43:40] 2025-11-21 02:42:44,969 | INFO     | pilot state: finished 
[2025-11-21 03:43:40] 2025-11-21 02:42:44,969 | INFO     | transexitcode: 0
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | exeerrorcode: 0
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | exeerrordiag: 
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | exitcode: 0
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | exitmsg: OK
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | cpuconsumptiontime: 302721 s
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | nevents: 1000
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | neventsw: 0
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | pid: 9718
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | pgrp: 9718
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | corecount: 8
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | event service: False
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | sizes: {0: 2297195, 1: 2297195, 8: 2297485, 12: 2297513, 79456: 2356675, 79462: 2367451, 79569: 2367641}
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | --------------------------------------------------
[2025-11-21 03:43:40] 2025-11-21 02:42:44,970 | INFO     | 
[2025-11-21 03:43:40] 2025-11-21 02:42:44,971 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-21 03:43:40] 2025-11-21 02:42:45,397 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,398 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 03:43:40] 2025-11-21 02:42:45,399 | INFO     | job 6891106337 has completed (purged errors)
[2025-11-21 03:43:40] 2025-11-21 02:42:45,400 | INFO     | overall cleanup function is called
[2025-11-21 03:43:40] 2025-11-21 02:42:46,418 | INFO     | --- collectZombieJob: --- 10, [9718]
[2025-11-21 03:43:40] 2025-11-21 02:42:46,418 | INFO     | zombie collector waiting for pid 9718
[2025-11-21 03:43:40] 2025-11-21 02:42:46,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 03:43:40] 2025-11-21 02:42:46,418 | INFO     | collected zombie processes
[2025-11-21 03:43:40] 2025-11-21 02:42:46,418 | INFO     | will attempt to kill all subprocesses of pid=9718
[2025-11-21 03:43:40] 2025-11-21 02:42:46,517 | INFO     | process IDs to be killed: [9718] (in reverse order)
[2025-11-21 03:43:40] 2025-11-21 02:42:47,309 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 03:43:40] 2025-11-21 02:42:47,310 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 03:43:40] 2025-11-21 02:42:47,313 | INFO     | did not find any defunct processes belonging to 9718
[2025-11-21 03:43:40] 2025-11-21 02:42:47,316 | INFO     | did not find any defunct processes belonging to 9718
[2025-11-21 03:43:40] 2025-11-21 02:42:47,369 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 03:43:40] 2025-11-21 02:42:47,369 | INFO     | ready for new job
[2025-11-21 03:43:40] 2025-11-21 02:42:47,369 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 03:43:40] 2025-11-21 02:42:47,375 | INFO     | ***************************************
[2025-11-21 03:43:40] 2025-11-21 02:42:47,375 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 03:43:40] 2025-11-21 02:42:47,375 | INFO     | ***************************************
[2025-11-21 03:43:40] 2025-11-21 02:42:47,375 | INFO     | 
[2025-11-21 03:43:40] 2025-11-21 02:42:47,376 | INFO     | pilot is running in a VM
[2025-11-21 03:43:40] 2025-11-21 02:42:47,376 | INFO     | architecture information:
[2025-11-21 03:43:40] 2025-11-21 02:42:47,390 | INFO     | executing command: cat /etc/os-release
[2025-11-21 03:43:40] 2025-11-21 02:42:47,599 | INFO     | cat /etc/os-release:
[2025-11-21 03:43:40] NAME="CentOS Linux"
[2025-11-21 03:43:40] VERSION="7 (Core)"
[2025-11-21 03:43:40] ID="centos"
[2025-11-21 03:43:40] ID_LIKE="rhel fedora"
[2025-11-21 03:43:40] VERSION_ID="7"
[2025-11-21 03:43:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 03:43:40] ANSI_COLOR="0;31"
[2025-11-21 03:43:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 03:43:40] HOME_URL="https://www.centos.org/"
[2025-11-21 03:43:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 03:43:40] 
[2025-11-21 03:43:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 03:43:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 03:43:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 03:43:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 03:43:40] 
[2025-11-21 03:43:40] 2025-11-21 02:42:47,600 | INFO     | ***************************************
[2025-11-21 03:43:40] 2025-11-21 02:42:48,104 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-21 03:43:40] 2025-11-21 02:42:48,329 | INFO     | sufficient remaining disk space (495153315840 B)
[2025-11-21 03:43:40] 2025-11-21 02:42:48,330 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 03:43:40] 2025-11-21 02:42:48,330 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 03:43:40] 2025-11-21 02:42:48,330 | INFO     | update_server=False
[2025-11-21 03:43:40] 2025-11-21 02:42:48,330 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 03:43:40] 2025-11-21 02:42:48,331 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 03:43:40] 2025-11-21 02:42:48,377 | INFO     | all payload control threads have been joined
[2025-11-21 03:43:40] 2025-11-21 02:42:48,443 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 03:43:40] 2025-11-21 02:42:48,443 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 03:43:40] 2025-11-21 02:42:48,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:43:40] 2025-11-21 02:42:48,443 | INFO     | will abort loop
[2025-11-21 03:43:40] 2025-11-21 02:42:48,725 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 03:43:40] 2025-11-21 02:42:49,171 | INFO     | all job control threads have been joined
[2025-11-21 03:43:40] 2025-11-21 02:42:49,224 | INFO     | all data control threads have been joined
[2025-11-21 03:43:40] 2025-11-21 02:42:49,336 | INFO     | [job] retrieve thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:49,342 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:49,383 | INFO     | [payload] control thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:49,450 | INFO     | [job] job monitor thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:49,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:43:40] 2025-11-21 02:42:50,008 | INFO     | [data] copytool_in thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,178 | INFO     | [job] control thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,181 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,231 | INFO     | [data] control thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,360 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,363 | INFO     | [job] validate thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,451 | INFO     | [payload] validate_post thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,554 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,569 | INFO     | [payload] failed_post thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,732 | INFO     | [data] copytool_out thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:50,963 | INFO     | [job] queue monitor thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:42:52,342 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 03:43:40] 2025-11-21 02:43:17,261 | INFO     | PID=3203 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 03:43:40] 2025-11-21 02:43:17,261 | INFO     | .. there are 9 such processes running
[2025-11-21 03:43:40] 2025-11-21 02:43:17,263 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 03:43:40] 2025-11-21 02:43:17,263 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 03:43:40] 2025-11-21 02:43:17,263 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 03:43:40] 2025-11-21 02:43:31,399 | INFO     | [monitor] cgroup control has ended
[2025-11-21 03:43:40] 2025-11-21 02:43:31,570 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622234380096)>', '<ExcThread(monitor, started 139621644093184)>']
[2025-11-21 03:43:40] 2025-11-21 02:43:32,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 03:43:40] 2025-11-21 02:43:32,352 | INFO     | [monitor] control thread has ended
[2025-11-21 03:43:40] 2025-11-21 02:43:36,595 | INFO     | all workflow threads have been joined
[2025-11-21 03:43:40] 2025-11-21 02:43:36,596 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 03:43:40] 2025-11-21 02:43:36,596 | INFO     | traces error code: 0
[2025-11-21 03:43:40] 2025-11-21 02:43:36,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 03:43:40] 2025-11-21 02:43:36,884 [wrapper] ==== pilot stdout END ====
[2025-11-21 03:43:40] 2025-11-21 02:43:36,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 03:43:40] 2025-11-21 02:43:37,059 [wrapper] pilotpid: 3203
[2025-11-21 03:43:40] 2025-11-21 02:43:37,098 [wrapper] Pilot exit status: 0
[2025-11-21 03:43:40] 2025-11-21 02:43:37,486 [wrapper] pandaids: 6891106337
[2025-11-21 03:43:40] 2025-11-21 02:43:37,949 [wrapper] cleanup supervisor_pilot  9182 3204
[2025-11-21 03:43:40] 2025-11-21 02:43:38,062 [wrapper] Test setup, not cleaning
[2025-11-21 03:43:40] 2025-11-21 02:43:38,179 [wrapper] apfmon messages muted
[2025-11-21 03:43:40] 2025-11-21 02:43:38,256 [wrapper] ==== wrapper stdout END ====
[2025-11-21 03:43:40] 2025-11-21 02:43:38,313 [wrapper] ==== wrapper stderr END ====
[2025-11-21 03:43:40]  *** Error codes and diagnostics ***
[2025-11-21 03:43:40]     "exeErrorCode": 0,
[2025-11-21 03:43:40]     "exeErrorDiag": "",
[2025-11-21 03:43:40]     "pilotErrorCode": 0,
[2025-11-21 03:43:40]     "pilotErrorDiag": "",
[2025-11-21 03:43:40]  *** Listing of results directory ***
[2025-11-21 03:43:40] total 1327056
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc    576529 Nov 18 07:54 pilot3.tar.gz
[2025-11-21 03:43:40] -rwx------. 1 boinc boinc     36292 Nov 18 07:57 runpilot2-wrapper.sh
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc      5112 Nov 18 07:57 queuedata.json
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc       100 Nov 20 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 03:43:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 05:35 run_atlas
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc       105 Nov 20 05:35 job.xml
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc      6391 Nov 20 05:35 init_data.xml
[2025-11-21 03:43:40] -rw-r--r--. 2 boinc boinc 408887880 Nov 20 05:35 EVNT.47483658._000260.pool.root.1
[2025-11-21 03:43:40] -rw-r--r--. 2 boinc boinc     15120 Nov 20 05:35 start_atlas.sh
[2025-11-21 03:43:40] drwxrwx--x. 2 boinc boinc        68 Nov 20 05:35 shared
[2025-11-21 03:43:40] -rw-r--r--. 2 boinc boinc    590100 Nov 20 05:35 input.tar.gz
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc         0 Nov 20 05:35 boinc_lockfile
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc      2770 Nov 20 05:35 pandaJob.out
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc    989427 Nov 20 05:36 agis_schedconf.cvmfs.json
[2025-11-21 03:43:40] drwx------. 5 boinc boinc      4096 Nov 20 05:36 pilot3
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc       533 Nov 21 03:28 boinc_task_state.xml
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc 920057541 Nov 21 03:39 HITS.47483661._002291.pool.root.1
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc      1035 Nov 21 03:40 memory_monitor_summary.json
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc   1526164 Nov 21 03:40 agis_ddmendpoints.agis.ALL.json
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc   2406903 Nov 21 03:40 log.47483661._002291.job.log.tgz.1
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc      8618 Nov 21 03:42 heartbeat.json
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc        95 Nov 21 03:43 pilot_heartbeat.json
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc      8192 Nov 21 03:43 boinc_mmap_file
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc        29 Nov 21 03:43 wrapper_checkpoint.txt
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc      5070 Nov 21 03:43 pilotlog.txt
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc  10620000 Nov 21 03:43 log.47483661._002291.job.log.1
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc       353 Nov 21 03:43 output.list
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc       620 Nov 21 03:43 runtime_log
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc  13045760 Nov 21 03:43 result.tar.gz
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc       662 Nov 21 03:43 xeZKDmLpUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCNKODmiryn6m.diag
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc      8717 Nov 21 03:43 runtime_log.err
[2025-11-21 03:43:40] -rw-r--r--. 1 boinc boinc     20798 Nov 21 03:43 stderr.txt
[2025-11-21 03:43:40] HITS file was successfully produced:
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc 920057541 Nov 21 03:39 shared/HITS.pool.root.1
[2025-11-21 03:43:40]  *** Contents of shared directory: ***
[2025-11-21 03:43:40] total 1311140
[2025-11-21 03:43:40] -rw-r--r--. 2 boinc boinc 408887880 Nov 20 05:35 ATLAS.root_0
[2025-11-21 03:43:40] -rw-r--r--. 2 boinc boinc     15120 Nov 20 05:35 start_atlas.sh
[2025-11-21 03:43:40] -rw-r--r--. 2 boinc boinc    590100 Nov 20 05:35 input.tar.gz
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc 920057541 Nov 21 03:39 HITS.pool.root.1
[2025-11-21 03:43:40] -rw-------. 1 boinc boinc  13045760 Nov 21 03:43 result.tar.gz
03:43:42 (31758): run_atlas exited; CPU time 303022.144754
03:43:42 (31758): called boinc_finish(0)

</stderr_txt>
]]>

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