Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:36:42 (19763): wrapper (7.7.26015): starting
06:36:42 (19763): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 06:36:42] Arguments: --nthreads 8
[2025-11-19 06:36:42] Threads: 8
[2025-11-19 06:36:42] Checking for CVMFS
[2025-11-19 06:36:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 06:36:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 06:36:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 06:36:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 06:36:44] 2.11.2.0 15981 179848 138196 153032 0 129 25106301 25165825 3808 130560 4 62395775 99.887 31741972 2700 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 06:36:44] CVMFS is ok
[2025-11-19 06:36:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 06:36:45] Checking for apptainer binary...
[2025-11-19 06:36:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 06:36:45] Running /usr/bin/apptainer --version
[2025-11-19 06:36:45] apptainer version 1.3.2-1.el7
[2025-11-19 06:36:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 06:37:13] cg-vwn479.simple-grid.lan
[2025-11-19 06:37:13] apptainer works
[2025-11-19 06:37:14] Set ATHENA_PROC_NUMBER=8
[2025-11-19 06:37:14] Set ATHENA_CORE_NUMBER=8
[2025-11-19 06:37:14] Starting ATLAS job with PandaID=6891071882
[2025-11-19 06:37:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 05:35:32]  *** The last 200 lines of the pilot log: ***
[2025-11-20 05:35:32] 2025-11-20 04:34:44,480 | INFO     | PID=23572 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 05:35:32] 2025-11-20 04:34:44,480 | INFO     | .. there are 9 such processes running
[2025-11-20 05:35:32] 2025-11-20 04:34:45,481 | INFO     | time since job start (82432s) is within the limit (172800.0s)
[2025-11-20 05:35:32] 2025-11-20 04:34:46,970 | INFO     | monitor loop #5574: job 0:6891071882 is in state 'finished'
[2025-11-20 05:35:32] 2025-11-20 04:34:46,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 05:35:32] 2025-11-20 04:34:47,488 | INFO     | time since job start (82434s) is within the limit (172800.0s)
[2025-11-20 05:35:32] 2025-11-20 04:34:49,484 | INFO     | monitor loop #5575: job 0:6891071882 is in state 'finished'
[2025-11-20 05:35:32] 2025-11-20 04:34:49,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 05:35:32] 2025-11-20 04:34:49,507 | INFO     | time since job start (82436s) is within the limit (172800.0s)
[2025-11-20 05:35:32] 2025-11-20 04:34:51,514 | INFO     | time since job start (82438s) is within the limit (172800.0s)
[2025-11-20 05:35:32] 2025-11-20 04:34:51,990 | INFO     | monitor loop #5576: job 0:6891071882 is in state 'finished'
[2025-11-20 05:35:32] 2025-11-20 04:34:51,990 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 05:35:32] 2025-11-20 04:34:53,521 | INFO     | time since job start (82440s) is within the limit (172800.0s)
[2025-11-20 05:35:32] 2025-11-20 04:34:54,496 | INFO     | monitor loop #5577: job 0:6891071882 is in state 'finished'
[2025-11-20 05:35:32] 2025-11-20 04:34:54,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 05:35:32] 2025-11-20 04:34:55,528 | INFO     | time since job start (82442s) is within the limit (172800.0s)
[2025-11-20 05:35:32] 2025-11-20 04:34:56,160 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 05:35:32] 2025-11-20 04:34:56,161 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-20 05:35:32] 2025-11-20 04:34:56,163 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6891071882/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 05:35:32] 2025-11-20 04:34:56,163 | INFO     | extracted standard info from prmon json
[2025-11-20 05:35:32] 2025-11-20 04:34:56,163 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 05:35:32] 2025-11-20 04:34:56,163 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 05:35:32] 2025-11-20 04:34:56,199 | INFO     | fitting pss+swap vs Time
[2025-11-20 05:35:32] 2025-11-20 04:34:56,228 | INFO     | sum of square deviations: 749436056424.7643
[2025-11-20 05:35:32] 2025-11-20 04:34:56,293 | INFO     | sum of deviations: 2782555754378.0625
[2025-11-20 05:35:32] 2025-11-20 04:34:56,293 | INFO     | mean x: 1763572238.7846498
[2025-11-20 05:35:32] 2025-11-20 04:34:56,294 | INFO     | mean y: 2850574.7995529063
[2025-11-20 05:35:32] 2025-11-20 04:34:56,294 | INFO     | intersect: -6545057067.517448
[2025-11-20 05:35:32] 2025-11-20 04:34:56,295 | INFO     | chi2: 18.46141565960822
[2025-11-20 05:35:32] 2025-11-20 04:34:56,297 | INFO     | sum of square deviations: 741091021108.9811
[2025-11-20 05:35:32] 2025-11-20 04:34:56,363 | INFO     | sum of deviations: 3225895283666.774
[2025-11-20 05:35:32] 2025-11-20 04:34:56,363 | INFO     | mean x: 1763572086.289454
[2025-11-20 05:35:32] 2025-11-20 04:34:56,363 | INFO     | mean y: 2858675.331338818
[2025-11-20 05:35:32] 2025-11-20 04:34:56,363 | INFO     | intersect: -7673794682.382074
[2025-11-20 05:35:32] 2025-11-20 04:34:56,365 | INFO     | chi2: 15.281038964529294
[2025-11-20 05:35:32] 2025-11-20 04:34:56,365 | INFO     | current chi2=15.281038964529294 (change=17.227155022771527 %)
[2025-11-20 05:35:32] 2025-11-20 04:34:56,365 | INFO     | right removable region: 1336
[2025-11-20 05:35:32] 2025-11-20 04:34:56,367 | INFO     | sum of square deviations: 741089969468.9825
[2025-11-20 05:35:32] 2025-11-20 04:34:56,410 | INFO     | sum of deviations: 2247924108731.6387
[2025-11-20 05:35:32] 2025-11-20 04:34:56,410 | INFO     | mean x: 1763572391.289454
[2025-11-20 05:35:32] 2025-11-20 04:34:56,410 | INFO     | mean y: 2860342.4712041887
[2025-11-20 05:35:32] 2025-11-20 04:34:56,410 | INFO     | intersect: -5346526451.569051
[2025-11-20 05:35:32] 2025-11-20 04:34:56,412 | INFO     | chi2: 14.289009665906754
[2025-11-20 05:35:32] 2025-11-20 04:34:56,412 | INFO     | current chi2=14.289009665906754 (change=22.600682800454383 %)
[2025-11-20 05:35:32] 2025-11-20 04:34:56,412 | INFO     | left removable region: 10
[2025-11-20 05:35:32] 2025-11-20 04:34:56,414 | INFO     | sum of square deviations: 722948411674.0371
[2025-11-20 05:35:32] 2025-11-20 04:34:56,460 | INFO     | sum of deviations: 2363521108351.388
[2025-11-20 05:35:32] 2025-11-20 04:34:56,463 | INFO     | mean x: 1763572360.8001509
[2025-11-20 05:35:32] 2025-11-20 04:34:56,464 | INFO     | mean y: 2878191.069381599
[2025-11-20 05:35:32] 2025-11-20 04:34:56,464 | INFO     | intersect: -5762734449.539922
[2025-11-20 05:35:32] 2025-11-20 04:34:56,465 | INFO     | chi2: 7.732958629875602
[2025-11-20 05:35:32] 2025-11-20 04:34:56,465 | INFO     | current memory leak: 3.27 B/s (using 1326 data points, chi2=7.73)
[2025-11-20 05:35:32] 2025-11-20 04:34:56,468 | INFO     | could have reported an average CPU frequency of 2249 MHz (46 samples)
[2025-11-20 05:35:32] 2025-11-20 04:34:56,468 | INFO     | ..............................
[2025-11-20 05:35:32] 2025-11-20 04:34:56,468 | INFO     | . Timing measurements:
[2025-11-20 05:35:32] 2025-11-20 04:34:56,469 | INFO     | . get job = 0 s
[2025-11-20 05:35:32] 2025-11-20 04:34:56,469 | INFO     | . initial setup = 7 s
[2025-11-20 05:35:32] 2025-11-20 04:34:56,469 | INFO     | . payload setup = 145 s
[2025-11-20 05:35:32] 2025-11-20 04:34:56,469 | INFO     | . stage-in = 0 s
[2025-11-20 05:35:32] 2025-11-20 04:34:56,469 | INFO     | . payload execution = 82007 s
[2025-11-20 05:35:32] 2025-11-20 04:34:56,469 | INFO     | . stage-out = 5 s
[2025-11-20 05:35:32] 2025-11-20 04:34:56,469 | INFO     | . log creation = 2 s
[2025-11-20 05:35:32] 2025-11-20 04:34:56,469 | INFO     | ..............................
[2025-11-20 05:35:32] 2025-11-20 04:34:56,985 | INFO     | 
[2025-11-20 05:35:32] 2025-11-20 04:34:56,985 | INFO     | job summary report
[2025-11-20 05:35:32] 2025-11-20 04:34:56,985 | INFO     | --------------------------------------------------
[2025-11-20 05:35:32] 2025-11-20 04:34:56,985 | INFO     | PanDA job id: 6891071882
[2025-11-20 05:35:32] 2025-11-20 04:34:56,985 | INFO     | task id: 47483661
[2025-11-20 05:35:32] 2025-11-20 04:34:56,985 | INFO     | errors: (none)
[2025-11-20 05:35:32] 2025-11-20 04:34:56,985 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 05:35:32] 2025-11-20 04:34:56,985 | INFO     | pilot state: finished 
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | transexitcode: 0
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | exeerrorcode: 0
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | exeerrordiag: 
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | exitcode: 0
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | exitmsg: OK
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | cpuconsumptiontime: 305958 s
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | nevents: 1000
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | neventsw: 0
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | pid: 30433
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | pgrp: 30433
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | corecount: 8
[2025-11-20 05:35:32] 2025-11-20 04:34:56,986 | INFO     | event service: False
[2025-11-20 05:35:32] 2025-11-20 04:34:56,987 | INFO     | sizes: {0: 2297201, 1: 2297229, 12: 2297229, 23: 2297257, 33: 2297285, 44: 2297341, 55: 2297497, 65: 2297525, 76: 2297553, 87: 2297609, 89: 2297899, 98: 2298207, 8
[2025-11-20 05:35:32] 2025-11-20 04:34:56,987 | INFO     | --------------------------------------------------
[2025-11-20 05:35:32] 2025-11-20 04:34:56,987 | INFO     | 
[2025-11-20 05:35:32] 2025-11-20 04:34:56,987 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-20 05:35:32] 2025-11-20 04:34:57,343 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,343 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,343 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,343 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,344 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 05:35:32] 2025-11-20 04:34:57,345 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,345 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 05:35:32] 2025-11-20 04:34:57,345 | INFO     | job 6891071882 has completed (purged errors)
[2025-11-20 05:35:32] 2025-11-20 04:34:57,345 | INFO     | overall cleanup function is called
[2025-11-20 05:35:32] 2025-11-20 04:34:58,370 | INFO     | --- collectZombieJob: --- 10, [30433]
[2025-11-20 05:35:32] 2025-11-20 04:34:58,370 | INFO     | zombie collector waiting for pid 30433
[2025-11-20 05:35:32] 2025-11-20 04:34:58,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 05:35:32] 2025-11-20 04:34:58,370 | INFO     | collected zombie processes
[2025-11-20 05:35:32] 2025-11-20 04:34:58,370 | INFO     | will attempt to kill all subprocesses of pid=30433
[2025-11-20 05:35:32] 2025-11-20 04:34:58,503 | INFO     | process IDs to be killed: [30433] (in reverse order)
[2025-11-20 05:35:32] 2025-11-20 04:34:59,135 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 05:35:32] 2025-11-20 04:34:59,136 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 05:35:32] 2025-11-20 04:34:59,139 | INFO     | did not find any defunct processes belonging to 30433
[2025-11-20 05:35:32] 2025-11-20 04:34:59,150 | INFO     | did not find any defunct processes belonging to 30433
[2025-11-20 05:35:32] 2025-11-20 04:34:59,200 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 05:35:32] 2025-11-20 04:34:59,200 | INFO     | ready for new job
[2025-11-20 05:35:32] 2025-11-20 04:34:59,200 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 05:35:32] 2025-11-20 04:34:59,206 | INFO     | ***************************************
[2025-11-20 05:35:32] 2025-11-20 04:34:59,207 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 05:35:32] 2025-11-20 04:34:59,207 | INFO     | ***************************************
[2025-11-20 05:35:32] 2025-11-20 04:34:59,207 | INFO     | 
[2025-11-20 05:35:32] 2025-11-20 04:34:59,207 | INFO     | pilot is running in a VM
[2025-11-20 05:35:32] 2025-11-20 04:34:59,208 | INFO     | architecture information:
[2025-11-20 05:35:32] 2025-11-20 04:34:59,214 | INFO     | executing command: cat /etc/os-release
[2025-11-20 05:35:32] 2025-11-20 04:34:59,407 | INFO     | cat /etc/os-release:
[2025-11-20 05:35:32] NAME="CentOS Linux"
[2025-11-20 05:35:32] VERSION="7 (Core)"
[2025-11-20 05:35:32] ID="centos"
[2025-11-20 05:35:32] ID_LIKE="rhel fedora"
[2025-11-20 05:35:32] VERSION_ID="7"
[2025-11-20 05:35:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 05:35:32] ANSI_COLOR="0;31"
[2025-11-20 05:35:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 05:35:32] HOME_URL="https://www.centos.org/"
[2025-11-20 05:35:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 05:35:32] 
[2025-11-20 05:35:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 05:35:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 05:35:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 05:35:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 05:35:32] 
[2025-11-20 05:35:32] 2025-11-20 04:34:59,408 | INFO     | ***************************************
[2025-11-20 05:35:32] 2025-11-20 04:34:59,912 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-20 05:35:32] 2025-11-20 04:35:00,084 | INFO     | sufficient remaining disk space (495267610624 B)
[2025-11-20 05:35:32] 2025-11-20 04:35:00,084 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 05:35:32] 2025-11-20 04:35:00,084 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 05:35:32] 2025-11-20 04:35:00,084 | INFO     | update_server=False
[2025-11-20 05:35:32] 2025-11-20 04:35:00,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 05:35:32] 2025-11-20 04:35:00,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 05:35:32] 2025-11-20 04:35:00,089 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 05:35:32] 2025-11-20 04:35:00,165 | INFO     | all job control threads have been joined
[2025-11-20 05:35:32] 2025-11-20 04:35:00,487 | INFO     | all data control threads have been joined
[2025-11-20 05:35:32] 2025-11-20 04:35:00,520 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:35:32] 2025-11-20 04:35:00,520 | INFO     | aborting loop
[2025-11-20 05:35:32] 2025-11-20 04:35:01,091 | INFO     | [job] retrieve thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:01,148 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:01,171 | INFO     | [job] control thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:01,173 | INFO     | all payload control threads have been joined
[2025-11-20 05:35:32] 2025-11-20 04:35:01,305 | INFO     | [job] validate thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:01,351 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:01,492 | INFO     | [data] control thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:01,526 | INFO     | [job] job monitor thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:01,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:35:32] 2025-11-20 04:35:01,635 | INFO     | [payload] validate_post thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:01,953 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:01,980 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:02,094 | INFO     | [data] copytool_out thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:02,109 | INFO     | [data] copytool_in thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:02,180 | INFO     | [payload] control thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:02,284 | INFO     | [payload] failed_post thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:02,613 | INFO     | [job] queue monitor thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:04,099 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 05:35:32] 2025-11-20 04:35:16,607 | INFO     | [monitor] cgroup control has ended
[2025-11-20 05:35:32] 2025-11-20 04:35:17,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140153969944384)>', '<ExcThread(monitor, started 140153087579904)>']
[2025-11-20 05:35:32] 2025-11-20 04:35:22,124 | INFO     | all workflow threads have been joined
[2025-11-20 05:35:32] 2025-11-20 04:35:22,124 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 05:35:32] 2025-11-20 04:35:22,124 | INFO     | traces error code: 0
[2025-11-20 05:35:32] 2025-11-20 04:35:22,124 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 05:35:32] 2025-11-20 04:35:28,714 | INFO     | PID=23572 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 05:35:32] 2025-11-20 04:35:28,714 | INFO     | .. there are 9 such processes running
[2025-11-20 05:35:32] 2025-11-20 04:35:28,715 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 05:35:32] 2025-11-20 04:35:28,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 05:35:32] 2025-11-20 04:35:28,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 05:35:32] 2025-11-20 04:35:28,715 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 05:35:32] 2025-11-20 04:35:28,715 | INFO     | [monitor] control thread has ended
[2025-11-20 05:35:32] 2025-11-20 04:35:28,954 [wrapper] ==== pilot stdout END ====
[2025-11-20 05:35:32] 2025-11-20 04:35:28,960 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 05:35:32] 2025-11-20 04:35:28,967 [wrapper] pilotpid: 23572
[2025-11-20 05:35:32] 2025-11-20 04:35:28,972 [wrapper] Pilot exit status: 0
[2025-11-20 05:35:32] 2025-11-20 04:35:29,343 [wrapper] pandaids: 6891071882
[2025-11-20 05:35:32] 2025-11-20 04:35:30,429 [wrapper] cleanup supervisor_pilot 28203 23573
[2025-11-20 05:35:32] 2025-11-20 04:35:30,477 [wrapper] Test setup, not cleaning
[2025-11-20 05:35:32] 2025-11-20 04:35:30,597 [wrapper] apfmon messages muted
[2025-11-20 05:35:32] 2025-11-20 04:35:30,705 [wrapper] ==== wrapper stdout END ====
[2025-11-20 05:35:32] 2025-11-20 04:35:30,813 [wrapper] ==== wrapper stderr END ====
[2025-11-20 05:35:32]  *** Error codes and diagnostics ***
[2025-11-20 05:35:32]     "exeErrorCode": 0,
[2025-11-20 05:35:32]     "exeErrorDiag": "",
[2025-11-20 05:35:32]     "pilotErrorCode": 0,
[2025-11-20 05:35:32]     "pilotErrorDiag": "",
[2025-11-20 05:35:32]  *** Listing of results directory ***
[2025-11-20 05:35:32] total 1346424
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc    576529 Nov 18 06:55 pilot3.tar.gz
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc      5112 Nov 18 06:59 queuedata.json
[2025-11-20 05:35:32] -rwx------. 1 boinc boinc     36292 Nov 18 07:00 runpilot2-wrapper.sh
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc       100 Nov 19 06:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 05:35:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 06:36 run_atlas
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc       105 Nov 19 06:36 job.xml
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc      6391 Nov 19 06:36 init_data.xml
[2025-11-20 05:35:32] -rw-r--r--. 2 boinc boinc 411609147 Nov 19 06:36 EVNT.47483658._000168.pool.root.1
[2025-11-20 05:35:32] -rw-r--r--. 2 boinc boinc     15120 Nov 19 06:36 start_atlas.sh
[2025-11-20 05:35:32] drwxrwx--x. 2 boinc boinc        68 Nov 19 06:36 shared
[2025-11-20 05:35:32] -rw-r--r--. 2 boinc boinc    590098 Nov 19 06:36 input.tar.gz
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc         0 Nov 19 06:36 boinc_lockfile
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc      2773 Nov 19 06:37 pandaJob.out
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc    992806 Nov 19 06:40 agis_schedconf.cvmfs.json
[2025-11-20 05:35:32] drwx------. 5 boinc boinc      4096 Nov 19 06:40 pilot3
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc       533 Nov 20 05:11 boinc_task_state.xml
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc 936327835 Nov 20 05:32 HITS.47483661._001679.pool.root.1
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc      1034 Nov 20 05:33 memory_monitor_summary.json
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc   1525063 Nov 20 05:33 agis_ddmendpoints.agis.ALL.json
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc   2438372 Nov 20 05:33 log.47483661._001679.job.log.tgz.1
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc        95 Nov 20 05:34 pilot_heartbeat.json
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc      8639 Nov 20 05:34 heartbeat.json
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc      8192 Nov 20 05:35 boinc_mmap_file
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc        29 Nov 20 05:35 wrapper_checkpoint.txt
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc       820 Nov 20 05:35 pilotlog.txt
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc  11002558 Nov 20 05:35 log.47483661._001679.job.log.1
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc       353 Nov 20 05:35 output.list
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc       620 Nov 20 05:35 runtime_log
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc  13465600 Nov 20 05:35 result.tar.gz
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc      8717 Nov 20 05:35 runtime_log.err
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc       662 Nov 20 05:35 HTpKDmswTf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOKKODmHzwv3m.diag
[2025-11-20 05:35:32] -rw-r--r--. 1 boinc boinc     21506 Nov 20 05:35 stderr.txt
[2025-11-20 05:35:32] HITS file was successfully produced:
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc 936327835 Nov 20 05:32 shared/HITS.pool.root.1
[2025-11-20 05:35:32]  *** Contents of shared directory: ***
[2025-11-20 05:35:32] total 1330096
[2025-11-20 05:35:32] -rw-r--r--. 2 boinc boinc 411609147 Nov 19 06:36 ATLAS.root_0
[2025-11-20 05:35:32] -rw-r--r--. 2 boinc boinc     15120 Nov 19 06:36 start_atlas.sh
[2025-11-20 05:35:32] -rw-r--r--. 2 boinc boinc    590098 Nov 19 06:36 input.tar.gz
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc 936327835 Nov 20 05:32 HITS.pool.root.1
[2025-11-20 05:35:32] -rw-------. 1 boinc boinc  13465600 Nov 20 05:35 result.tar.gz
05:35:34 (19763): run_atlas exited; CPU time 306359.487210
05:35:34 (19763): called boinc_finish(0)

</stderr_txt>
]]>

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