Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:05:12 (28303): wrapper (7.7.26015): starting
10:05:12 (28303): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 10:05:12] Arguments: --nthreads 8
[2025-11-20 10:05:12] Threads: 8
[2025-11-20 10:05:12] Checking for CVMFS
[2025-11-20 10:05:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 10:05:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 10:05:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 10:05:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 10:05:14] 2.11.2.0 12124 202389 141608 153069 2 236 20684894 25165825 4632 130560 25 82176369 99.878 38188067 2805 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 10:05:14] CVMFS is ok
[2025-11-20 10:05:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 10:05:14] Checking for apptainer binary...
[2025-11-20 10:05:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 10:05:14] Running /usr/bin/apptainer --version
[2025-11-20 10:05:15] apptainer version 1.3.2-1.el7
[2025-11-20 10:05:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 10:05:48] cg-vwn300.simple-grid.lan
[2025-11-20 10:05:48] apptainer works
[2025-11-20 10:05:48] Set ATHENA_PROC_NUMBER=8
[2025-11-20 10:05:48] Set ATHENA_CORE_NUMBER=8
[2025-11-20 10:05:48] Starting ATLAS job with PandaID=6891072067
[2025-11-20 10:05:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 11:38:26]  *** The last 200 lines of the pilot log: ***
[2025-11-21 11:38:26] 2025-11-21 10:37:38,798 | INFO     | monitor loop #6187: job 0:6891072067 is in state 'finished'
[2025-11-21 11:38:26] 2025-11-21 10:37:38,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 11:38:26] 2025-11-21 10:37:40,246 | INFO     | time since job start (91699s) is within the limit (172800.0s)
[2025-11-21 11:38:26] 2025-11-21 10:37:41,305 | INFO     | monitor loop #6188: job 0:6891072067 is in state 'finished'
[2025-11-21 11:38:26] 2025-11-21 10:37:41,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 11:38:26] 2025-11-21 10:37:42,255 | INFO     | time since job start (91701s) is within the limit (172800.0s)
[2025-11-21 11:38:26] 2025-11-21 10:37:43,810 | INFO     | monitor loop #6189: job 0:6891072067 is in state 'finished'
[2025-11-21 11:38:26] 2025-11-21 10:37:43,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 11:38:26] 2025-11-21 10:37:44,261 | INFO     | time since job start (91703s) is within the limit (172800.0s)
[2025-11-21 11:38:26] 2025-11-21 10:37:46,267 | INFO     | time since job start (91705s) is within the limit (172800.0s)
[2025-11-21 11:38:26] 2025-11-21 10:37:46,324 | INFO     | monitor loop #6190: job 0:6891072067 is in state 'finished'
[2025-11-21 11:38:26] 2025-11-21 10:37:46,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 11:38:26] 2025-11-21 10:37:48,274 | INFO     | time since job start (91707s) is within the limit (172800.0s)
[2025-11-21 11:38:26] 2025-11-21 10:37:48,830 | INFO     | monitor loop #6191: job 0:6891072067 is in state 'finished'
[2025-11-21 11:38:26] 2025-11-21 10:37:48,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 11:38:26] 2025-11-21 10:37:49,476 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 11:38:26] 2025-11-21 10:37:49,478 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-21 11:38:26] 2025-11-21 10:37:49,480 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6891072067/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 11:38:26] 2025-11-21 10:37:49,480 | INFO     | extracted standard info from prmon json
[2025-11-21 11:38:26] 2025-11-21 10:37:49,481 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 11:38:26] 2025-11-21 10:37:49,481 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 11:38:26] 2025-11-21 10:37:49,527 | INFO     | fitting pss+swap vs Time
[2025-11-21 11:38:26] 2025-11-21 10:37:49,529 | INFO     | sum of square deviations: 1031947464935.8674
[2025-11-21 11:38:26] 2025-11-21 10:37:49,599 | INFO     | sum of deviations: 4899544513204.401
[2025-11-21 11:38:26] 2025-11-21 10:37:49,600 | INFO     | mean x: 1763675809.3295379
[2025-11-21 11:38:26] 2025-11-21 10:37:49,600 | INFO     | mean y: 2846295.2471533823
[2025-11-21 11:38:26] 2025-11-21 10:37:49,600 | INFO     | intersect: -8370843672.787116
[2025-11-21 11:38:26] 2025-11-21 10:37:49,602 | INFO     | chi2: 22.201828034401604
[2025-11-21 11:38:26] 2025-11-21 10:37:49,604 | INFO     | sum of square deviations: 1021614890561.9996
[2025-11-21 11:38:26] 2025-11-21 10:37:49,677 | INFO     | sum of deviations: 5391857062212.155
[2025-11-21 11:38:26] 2025-11-21 10:37:49,678 | INFO     | mean x: 1763675656.8340054
[2025-11-21 11:38:26] 2025-11-21 10:37:49,678 | INFO     | mean y: 2853560.186827957
[2025-11-21 11:38:26] 2025-11-21 10:37:49,678 | INFO     | intersect: -9305435829.096483
[2025-11-21 11:38:26] 2025-11-21 10:37:49,680 | INFO     | chi2: 19.099534557565956
[2025-11-21 11:38:26] 2025-11-21 10:37:49,680 | INFO     | current chi2=19.099534557565956 (change=13.97314433761338 %)
[2025-11-21 11:38:26] 2025-11-21 10:37:49,680 | INFO     | right removable region: 1487
[2025-11-21 11:38:26] 2025-11-21 10:37:49,683 | INFO     | sum of square deviations: 1021613679712.0006
[2025-11-21 11:38:26] 2025-11-21 10:37:49,748 | INFO     | sum of deviations: 4253617191591.927
[2025-11-21 11:38:26] 2025-11-21 10:37:49,758 | INFO     | mean x: 1763675961.8340054
[2025-11-21 11:38:26] 2025-11-21 10:37:49,758 | INFO     | mean y: 2855827.7325268816
[2025-11-21 11:38:26] 2025-11-21 10:37:49,758 | INFO     | intersect: -7340431111.973894
[2025-11-21 11:38:26] 2025-11-21 10:37:49,760 | INFO     | chi2: 17.094539757246128
[2025-11-21 11:38:26] 2025-11-21 10:37:49,760 | INFO     | current chi2=17.094539757246128 (change=23.00390881886736 %)
[2025-11-21 11:38:26] 2025-11-21 10:37:49,760 | INFO     | left removable region: 10
[2025-11-21 11:38:26] 2025-11-21 10:37:49,762 | INFO     | sum of square deviations: 999124099103.2786
[2025-11-21 11:38:26] 2025-11-21 10:37:49,825 | INFO     | sum of deviations: 4283013811674.888
[2025-11-21 11:38:26] 2025-11-21 10:37:49,825 | INFO     | mean x: 1763675931.3439405
[2025-11-21 11:38:26] 2025-11-21 10:37:49,826 | INFO     | mean y: 2873326.815165877
[2025-11-21 11:38:26] 2025-11-21 10:37:49,826 | INFO     | intersect: -7557597269.424386
[2025-11-21 11:38:26] 2025-11-21 10:37:49,827 | INFO     | chi2: 9.315781332821942
[2025-11-21 11:38:26] 2025-11-21 10:37:49,828 | INFO     | current memory leak: 4.29 B/s (using 1477 data points, chi2=9.32)
[2025-11-21 11:38:26] 2025-11-21 10:37:49,831 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-21 11:38:26] 2025-11-21 10:37:49,831 | INFO     | ..............................
[2025-11-21 11:38:26] 2025-11-21 10:37:49,831 | INFO     | . Timing measurements:
[2025-11-21 11:38:26] 2025-11-21 10:37:49,831 | INFO     | . get job = 0 s
[2025-11-21 11:38:26] 2025-11-21 10:37:49,831 | INFO     | . initial setup = 3 s
[2025-11-21 11:38:26] 2025-11-21 10:37:49,831 | INFO     | . payload setup = 181 s
[2025-11-21 11:38:26] 2025-11-21 10:37:49,832 | INFO     | . stage-in = 0 s
[2025-11-21 11:38:26] 2025-11-21 10:37:49,832 | INFO     | . payload execution = 91224 s
[2025-11-21 11:38:26] 2025-11-21 10:37:49,832 | INFO     | . stage-out = 9 s
[2025-11-21 11:38:26] 2025-11-21 10:37:49,832 | INFO     | . log creation = 2 s
[2025-11-21 11:38:26] 2025-11-21 10:37:49,832 | INFO     | ..............................
[2025-11-21 11:38:26] 2025-11-21 10:37:50,040 | INFO     | 
[2025-11-21 11:38:26] 2025-11-21 10:37:50,041 | INFO     | job summary report
[2025-11-21 11:38:26] 2025-11-21 10:37:50,041 | INFO     | --------------------------------------------------
[2025-11-21 11:38:26] 2025-11-21 10:37:50,041 | INFO     | PanDA job id: 6891072067
[2025-11-21 11:38:26] 2025-11-21 10:37:50,041 | INFO     | task id: 47483661
[2025-11-21 11:38:26] 2025-11-21 10:37:50,041 | INFO     | errors: (none)
[2025-11-21 11:38:26] 2025-11-21 10:37:50,041 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 11:38:26] 2025-11-21 10:37:50,041 | INFO     | pilot state: finished 
[2025-11-21 11:38:26] 2025-11-21 10:37:50,041 | INFO     | transexitcode: 0
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | exeerrorcode: 0
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | exeerrordiag: 
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | exitcode: 0
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | exitmsg: OK
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | cpuconsumptiontime: 342137 s
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | nevents: 1000
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | neventsw: 0
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | pid: 6246
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | pgrp: 6246
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | corecount: 8
[2025-11-21 11:38:26] 2025-11-21 10:37:50,042 | INFO     | event service: False
[2025-11-21 11:38:26] 2025-11-21 10:37:50,043 | INFO     | sizes: {0: 2296372, 1: 2297057, 2: 2297256, 13: 2297256, 23: 2297312, 34: 2297340, 45: 2297496, 56: 2297524, 66: 2297552, 77: 2297580, 88: 2297636, 96: 2298206, 99
[2025-11-21 11:38:26] 2025-11-21 10:37:50,043 | INFO     | --------------------------------------------------
[2025-11-21 11:38:26] 2025-11-21 10:37:50,043 | INFO     | 
[2025-11-21 11:38:26] 2025-11-21 10:37:50,043 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-21 11:38:26] 2025-11-21 10:37:50,176 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,176 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,176 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,177 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,178 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 11:38:26] 2025-11-21 10:37:50,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,178 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 11:38:26] 2025-11-21 10:37:50,178 | INFO     | job 6891072067 has completed (purged errors)
[2025-11-21 11:38:26] 2025-11-21 10:37:50,178 | INFO     | overall cleanup function is called
[2025-11-21 11:38:26] 2025-11-21 10:37:51,202 | INFO     | --- collectZombieJob: --- 10, [6246]
[2025-11-21 11:38:26] 2025-11-21 10:37:51,203 | INFO     | zombie collector waiting for pid 6246
[2025-11-21 11:38:26] 2025-11-21 10:37:51,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 11:38:26] 2025-11-21 10:37:51,203 | INFO     | collected zombie processes
[2025-11-21 11:38:26] 2025-11-21 10:37:51,203 | INFO     | will attempt to kill all subprocesses of pid=6246
[2025-11-21 11:38:26] 2025-11-21 10:37:51,355 | INFO     | process IDs to be killed: [6246] (in reverse order)
[2025-11-21 11:38:26] 2025-11-21 10:37:52,151 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 11:38:26] 2025-11-21 10:37:52,151 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 11:38:26] 2025-11-21 10:37:52,155 | INFO     | did not find any defunct processes belonging to 6246
[2025-11-21 11:38:26] 2025-11-21 10:37:52,159 | INFO     | did not find any defunct processes belonging to 6246
[2025-11-21 11:38:26] 2025-11-21 10:37:52,161 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 11:38:26] 2025-11-21 10:37:52,161 | INFO     | ready for new job
[2025-11-21 11:38:26] 2025-11-21 10:37:52,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 11:38:26] 2025-11-21 10:37:52,167 | INFO     | ***************************************
[2025-11-21 11:38:26] 2025-11-21 10:37:52,168 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 11:38:26] 2025-11-21 10:37:52,168 | INFO     | ***************************************
[2025-11-21 11:38:26] 2025-11-21 10:37:52,168 | INFO     | 
[2025-11-21 11:38:26] 2025-11-21 10:37:52,169 | INFO     | pilot is running in a VM
[2025-11-21 11:38:26] 2025-11-21 10:37:52,169 | INFO     | architecture information:
[2025-11-21 11:38:26] 2025-11-21 10:37:52,169 | INFO     | executing command: cat /etc/os-release
[2025-11-21 11:38:26] 2025-11-21 10:37:52,336 | INFO     | cat /etc/os-release:
[2025-11-21 11:38:26] NAME="CentOS Linux"
[2025-11-21 11:38:26] VERSION="7 (Core)"
[2025-11-21 11:38:26] ID="centos"
[2025-11-21 11:38:26] ID_LIKE="rhel fedora"
[2025-11-21 11:38:26] VERSION_ID="7"
[2025-11-21 11:38:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 11:38:26] ANSI_COLOR="0;31"
[2025-11-21 11:38:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 11:38:26] HOME_URL="https://www.centos.org/"
[2025-11-21 11:38:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 11:38:26] 
[2025-11-21 11:38:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 11:38:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 11:38:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 11:38:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 11:38:26] 
[2025-11-21 11:38:26] 2025-11-21 10:37:52,337 | INFO     | ***************************************
[2025-11-21 11:38:26] 2025-11-21 10:37:52,841 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-21 11:38:26] 2025-11-21 10:37:52,987 | INFO     | sufficient remaining disk space (495190016000 B)
[2025-11-21 11:38:26] 2025-11-21 10:37:52,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 11:38:26] 2025-11-21 10:37:52,988 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 11:38:26] 2025-11-21 10:37:52,988 | INFO     | update_server=False
[2025-11-21 11:38:26] 2025-11-21 10:37:52,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 11:38:26] 2025-11-21 10:37:52,989 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:38:26] 2025-11-21 10:37:52,989 | INFO     | aborting loop
[2025-11-21 11:38:26] 2025-11-21 10:37:52,989 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 11:38:26] 2025-11-21 10:37:53,013 | INFO     | all data control threads have been joined
[2025-11-21 11:38:26] 2025-11-21 10:37:53,322 | INFO     | all payload control threads have been joined
[2025-11-21 11:38:26] 2025-11-21 10:37:53,496 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 11:38:26] 2025-11-21 10:37:53,634 | INFO     | all job control threads have been joined
[2025-11-21 11:38:26] 2025-11-21 10:37:53,995 | INFO     | [job] retrieve thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:53,998 | INFO     | [job] job monitor thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:54,020 | INFO     | [data] control thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:54,200 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:54,309 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:54,329 | INFO     | [payload] control thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:54,582 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:54,641 | INFO     | [job] control thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:54,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:38:26] 2025-11-21 10:37:54,980 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:54,981 | INFO     | [job] validate thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:54,995 | INFO     | [data] copytool_out thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:55,089 | INFO     | [data] copytool_in thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:55,219 | INFO     | [payload] validate_post thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:55,595 | INFO     | [payload] failed_post thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:55,978 | INFO     | [job] queue monitor thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:37:57,505 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 11:38:26] 2025-11-21 10:38:01,560 | INFO     | [monitor] cgroup control has ended
[2025-11-21 11:38:26] 2025-11-21 10:38:02,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461350410048)>', '<ExcThread(monitor, started 140460899153664)>']
[2025-11-21 11:38:26] 2025-11-21 10:38:07,626 | INFO     | all workflow threads have been joined
[2025-11-21 11:38:26] 2025-11-21 10:38:07,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 11:38:26] 2025-11-21 10:38:07,627 | INFO     | traces error code: 0
[2025-11-21 11:38:26] 2025-11-21 10:38:07,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 11:38:26] 2025-11-21 10:38:21,493 | INFO     | PID=32099 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 11:38:26] 2025-11-21 10:38:21,493 | INFO     | .. there are 9 such processes running
[2025-11-21 11:38:26] 2025-11-21 10:38:21,494 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 11:38:26] 2025-11-21 10:38:21,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 11:38:26] 2025-11-21 10:38:21,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 11:38:26] 2025-11-21 10:38:21,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 11:38:26] 2025-11-21 10:38:21,498 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 11:38:26] 2025-11-21 10:38:21,499 | INFO     | [monitor] control thread has ended
[2025-11-21 11:38:26] 2025-11-21 10:38:21,872 [wrapper] ==== pilot stdout END ====
[2025-11-21 11:38:26] 2025-11-21 10:38:21,977 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 11:38:26] 2025-11-21 10:38:22,062 [wrapper] pilotpid: 32099
[2025-11-21 11:38:26] 2025-11-21 10:38:22,174 [wrapper] Pilot exit status: 0
[2025-11-21 11:38:26] 2025-11-21 10:38:22,544 [wrapper] pandaids: 6891072067
[2025-11-21 11:38:26] 2025-11-21 10:38:23,436 [wrapper] cleanup supervisor_pilot 30107 32100
[2025-11-21 11:38:26] 2025-11-21 10:38:23,567 [wrapper] Test setup, not cleaning
[2025-11-21 11:38:26] 2025-11-21 10:38:23,629 [wrapper] apfmon messages muted
[2025-11-21 11:38:26] 2025-11-21 10:38:23,678 [wrapper] ==== wrapper stdout END ====
[2025-11-21 11:38:26] 2025-11-21 10:38:23,762 [wrapper] ==== wrapper stderr END ====
[2025-11-21 11:38:26]  *** Error codes and diagnostics ***
[2025-11-21 11:38:26]     "exeErrorCode": 0,
[2025-11-21 11:38:26]     "exeErrorDiag": "",
[2025-11-21 11:38:26]     "pilotErrorCode": 0,
[2025-11-21 11:38:26]     "pilotErrorDiag": "",
[2025-11-21 11:38:26]  *** Listing of results directory ***
[2025-11-21 11:38:26] total 1347536
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc    576529 Nov 18 06:55 pilot3.tar.gz
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc      5112 Nov 18 06:59 queuedata.json
[2025-11-21 11:38:26] -rwx------. 1 boinc boinc     36292 Nov 18 07:00 runpilot2-wrapper.sh
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc       100 Nov 20 10:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 11:38:26] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 10:05 run_atlas
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc       105 Nov 20 10:05 job.xml
[2025-11-21 11:38:26] -rw-r--r--. 2 boinc boinc 412204725 Nov 20 10:05 EVNT.47483658._000184.pool.root.1
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc      6390 Nov 20 10:05 init_data.xml
[2025-11-21 11:38:26] -rw-r--r--. 2 boinc boinc     15120 Nov 20 10:05 start_atlas.sh
[2025-11-21 11:38:26] drwxrwx--x. 2 boinc boinc        68 Nov 20 10:05 shared
[2025-11-21 11:38:26] -rw-r--r--. 2 boinc boinc    590098 Nov 20 10:05 input.tar.gz
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc         0 Nov 20 10:05 boinc_lockfile
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc      2773 Nov 20 10:05 pandaJob.out
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc    989427 Nov 20 10:09 agis_schedconf.cvmfs.json
[2025-11-21 11:38:26] drwx------. 5 boinc boinc      4096 Nov 20 10:09 pilot3
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc       533 Nov 21 11:17 boinc_task_state.xml
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc 934182320 Nov 21 11:34 HITS.47483661._001833.pool.root.1
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc      1035 Nov 21 11:36 memory_monitor_summary.json
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc   1526164 Nov 21 11:36 agis_ddmendpoints.agis.ALL.json
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc   2558836 Nov 21 11:36 log.47483661._001833.job.log.tgz.1
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc      7941 Nov 21 11:37 heartbeat.json
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc      8192 Nov 21 11:38 boinc_mmap_file
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc        29 Nov 21 11:38 wrapper_checkpoint.txt
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc        95 Nov 21 11:38 pilot_heartbeat.json
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc       890 Nov 21 11:38 pilotlog.txt
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc  12237459 Nov 21 11:38 log.47483661._001833.job.log.1
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc       353 Nov 21 11:38 output.list
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc       620 Nov 21 11:38 runtime_log
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc  14817280 Nov 21 11:38 result.tar.gz
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc       662 Nov 21 11:38 wpzLDmswTf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmRLKODm7tuBOn.diag
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc      8703 Nov 21 11:38 runtime_log.err
[2025-11-21 11:38:26] -rw-r--r--. 1 boinc boinc     21416 Nov 21 11:38 stderr.txt
[2025-11-21 11:38:26] HITS file was successfully produced:
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc 934182320 Nov 21 11:34 shared/HITS.pool.root.1
[2025-11-21 11:38:26]  *** Contents of shared directory: ***
[2025-11-21 11:38:26] total 1329900
[2025-11-21 11:38:26] -rw-r--r--. 2 boinc boinc 412204725 Nov 20 10:05 ATLAS.root_0
[2025-11-21 11:38:26] -rw-r--r--. 2 boinc boinc     15120 Nov 20 10:05 start_atlas.sh
[2025-11-21 11:38:26] -rw-r--r--. 2 boinc boinc    590098 Nov 20 10:05 input.tar.gz
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc 934182320 Nov 21 11:34 HITS.pool.root.1
[2025-11-21 11:38:26] -rw-------. 1 boinc boinc  14817280 Nov 21 11:38 result.tar.gz
11:38:27 (28303): run_atlas exited; CPU time 342670.253194
11:38:27 (28303): called boinc_finish(0)

</stderr_txt>
]]>

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