Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:42 (250238): wrapper (7.7.26015): starting
00:03:42 (250238): wrapper: running run_atlas (--nthreads 9)
[2025-11-18 00:03:42] Arguments: --nthreads 9
[2025-11-18 00:03:42] Threads: 9
[2025-11-18 00:03:42] Checking for CVMFS
[2025-11-18 00:03:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 00:03:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 00:03:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 00:03:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 00:03:44] 2.13.3.0 12161 18085 212828 152989 0 252 38784015 40960000 16447 16776704 0 39352647 99.484 52519927 40734 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-18 00:03:44] CVMFS is ok
[2025-11-18 00:03:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 00:03:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 00:03:44] Further information can be found at the LHC@home message board.
[2025-11-18 00:03:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 00:03:44] Checking for apptainer binary...
[2025-11-18 00:03:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 00:03:44] Running /usr/bin/apptainer --version
[2025-11-18 00:03:44] apptainer version 1.4.4-1.el9
[2025-11-18 00:03:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 00:03:45] c6-5-7-1.aglt2.org
[2025-11-18 00:03:45] apptainer works
[2025-11-18 00:03:45] Set ATHENA_PROC_NUMBER=9
[2025-11-18 00:03:45] Set ATHENA_CORE_NUMBER=9
[2025-11-18 00:03:45] Starting ATLAS job with PandaID=6890968605
[2025-11-18 00:03:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 23:26:43]  *** The last 200 lines of the pilot log: ***
[2025-11-19 23:26:43] 2025-11-20 04:25:30,249 | INFO     | time since job start (170424s) is within the limit (172800.0s)
[2025-11-19 23:26:43] 2025-11-20 04:25:31,250 | INFO     | monitor loop #9121: job 0:6890968605 is in state 'finished'
[2025-11-19 23:26:43] 2025-11-20 04:25:31,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 23:26:43] 2025-11-20 04:25:33,798 | INFO     | monitor loop #9122: job 0:6890968605 is in state 'finished'
[2025-11-19 23:26:43] 2025-11-20 04:25:33,798 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 23:26:43] 2025-11-20 04:25:34,167 | INFO     | PID=254556 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-19 23:26:43] 2025-11-20 04:25:34,168 | INFO     | .. there are 18 such processes running
[2025-11-19 23:26:43] 2025-11-20 04:25:35,169 | INFO     | time since job start (170429s) is within the limit (172800.0s)
[2025-11-19 23:26:43] 2025-11-20 04:25:36,312 | INFO     | monitor loop #9123: job 0:6890968605 is in state 'finished'
[2025-11-19 23:26:43] 2025-11-20 04:25:36,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 23:26:43] 2025-11-20 04:25:36,987 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-19 23:26:43] 2025-11-20 04:25:37,018 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2775.6724821428566
[2025-11-19 23:26:43] 2025-11-20 04:25:37,050 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6890968605/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 23:26:43] 2025-11-20 04:25:37,059 | INFO     | extracted standard info from prmon json
[2025-11-19 23:26:43] 2025-11-20 04:25:37,059 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 23:26:43] 2025-11-20 04:25:37,059 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 23:26:43] 2025-11-20 04:25:37,195 | INFO     | time since job start (170431s) is within the limit (172800.0s)
[2025-11-19 23:26:43] 2025-11-20 04:25:37,222 | INFO     | fitting pss+swap vs Time
[2025-11-19 23:26:43] 2025-11-20 04:25:37,379 | INFO     | sum of square deviations: 6733854679485.811
[2025-11-19 23:26:43] 2025-11-20 04:25:38,706 | INFO     | sum of deviations: 19489966136294.414
[2025-11-19 23:26:43] 2025-11-20 04:25:38,707 | INFO     | mean x: 1763527573.027957
[2025-11-19 23:26:43] 2025-11-20 04:25:38,707 | INFO     | mean y: 3060456.211827957
[2025-11-19 23:26:43] 2025-11-20 04:25:38,707 | INFO     | intersect: -5101162060.416774
[2025-11-19 23:26:43] 2025-11-20 04:25:38,790 | INFO     | chi2: 30.769318928727984
[2025-11-19 23:26:43] 2025-11-20 04:25:38,821 | INFO     | sum of square deviations: 6697717414868.697
[2025-11-19 23:26:43] 2025-11-20 04:25:38,943 | INFO     | monitor loop #9124: job 0:6890968605 is in state 'finished'
[2025-11-19 23:26:43] 2025-11-20 04:25:38,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 23:26:43] 2025-11-20 04:25:39,244 | INFO     | time since job start (170433s) is within the limit (172800.0s)
[2025-11-19 23:26:43] 2025-11-20 04:25:39,860 | INFO     | sum of deviations: 20565520211711.57
[2025-11-19 23:26:43] 2025-11-20 04:25:39,860 | INFO     | mean x: 1763527420.535727
[2025-11-19 23:26:43] 2025-11-20 04:25:39,861 | INFO     | mean y: 3064994.4660682227
[2025-11-19 23:26:43] 2025-11-20 04:25:39,861 | INFO     | intersect: -5411893052.348761
[2025-11-19 23:26:43] 2025-11-20 04:25:39,885 | INFO     | chi2: 27.09888603203557
[2025-11-19 23:26:43] 2025-11-20 04:25:39,886 | INFO     | current chi2=27.09888603203557 (change=11.928872735839107 %)
[2025-11-19 23:26:43] 2025-11-20 04:25:39,906 | INFO     | right removable region: 2784
[2025-11-19 23:26:43] 2025-11-20 04:25:39,918 | INFO     | sum of square deviations: 6697709878920.614
[2025-11-19 23:26:43] 2025-11-20 04:25:40,663 | INFO     | sum of deviations: 18229647197179.25
[2025-11-19 23:26:43] 2025-11-20 04:25:40,671 | INFO     | mean x: 1763527725.536086
[2025-11-19 23:26:43] 2025-11-20 04:25:40,672 | INFO     | mean y: 3065773.808258528
[2025-11-19 23:26:43] 2025-11-20 04:25:40,672 | INFO     | intersect: -4796856713.151983
[2025-11-19 23:26:43] 2025-11-20 04:25:40,684 | INFO     | chi2: 26.08324613205463
[2025-11-19 23:26:43] 2025-11-20 04:25:40,684 | INFO     | current chi2=26.08324613205463 (change=15.229692953321011 %)
[2025-11-19 23:26:43] 2025-11-20 04:25:40,684 | INFO     | left removable region: 10
[2025-11-19 23:26:43] 2025-11-20 04:25:40,696 | INFO     | sum of square deviations: 6618656886312.518
[2025-11-19 23:26:43] 2025-11-20 04:25:41,197 | INFO     | sum of deviations: 18417056168515.28
[2025-11-19 23:26:43] 2025-11-20 04:25:41,197 | INFO     | mean x: 1763527695.0519106
[2025-11-19 23:26:43] 2025-11-20 04:25:41,197 | INFO     | mean y: 3075794.5050468636
[2025-11-19 23:26:43] 2025-11-20 04:25:41,198 | INFO     | intersect: -4904111444.8985195
[2025-11-19 23:26:43] 2025-11-20 04:25:41,209 | INFO     | chi2: 18.374209007872114
[2025-11-19 23:26:43] 2025-11-20 04:25:41,210 | INFO     | current memory leak: 2.78 B/s (using 2774 data points, chi2=18.37)
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | could have reported an average CPU frequency of 2777 MHz (96 samples)
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | ..............................
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | . Timing measurements:
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | . get job = 0 s
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | . initial setup = 13 s
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | . payload setup = 71 s
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | . stage-in = 0 s
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | . payload execution = 170213 s
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | . stage-out = 13 s
[2025-11-19 23:26:43] 2025-11-20 04:25:41,225 | INFO     | . log creation = 4 s
[2025-11-19 23:26:43] 2025-11-20 04:25:41,226 | INFO     | ..............................
[2025-11-19 23:26:43] 2025-11-20 04:25:41,375 | INFO     | time since job start (170435s) is within the limit (172800.0s)
[2025-11-19 23:26:43] 2025-11-20 04:25:41,516 | INFO     | 
[2025-11-19 23:26:43] 2025-11-20 04:25:41,516 | INFO     | job summary report
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | --------------------------------------------------
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | PanDA job id: 6890968605
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | task id: 47483661
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | errors: (none)
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | pilot state: finished 
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | transexitcode: 0
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | exeerrorcode: 0
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | exeerrordiag: 
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | exitcode: 0
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | exitmsg: OK
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | cpuconsumptiontime: 269814 s
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | nevents: 1000
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | neventsw: 0
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | pid: 264214
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | pgrp: 264214
[2025-11-19 23:26:43] 2025-11-20 04:25:41,517 | INFO     | corecount: 9
[2025-11-19 23:26:43] 2025-11-20 04:25:41,518 | INFO     | event service: False
[2025-11-19 23:26:43] 2025-11-20 04:25:41,518 | INFO     | sizes: {0: 2298408, 1: 2298663, 12: 2298663, 24: 2298691, 35: 2298719, 38: 2299009, 48: 2299165, 170287: 2399555, 170288: 2399554, 170302: 2408878, 170305: 2408934
[2025-11-19 23:26:43] 2025-11-20 04:25:41,518 | INFO     | --------------------------------------------------
[2025-11-19 23:26:43] 2025-11-20 04:25:41,518 | INFO     | 
[2025-11-19 23:26:43] 2025-11-20 04:25:41,518 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-19 23:26:43] 2025-11-20 04:25:41,707 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,708 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,708 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,708 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,708 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,708 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,708 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,708 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,709 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 23:26:43] 2025-11-20 04:25:41,710 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,710 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 23:26:43] 2025-11-20 04:25:41,710 | INFO     | job 6890968605 has completed (purged errors)
[2025-11-19 23:26:43] 2025-11-20 04:25:41,710 | INFO     | overall cleanup function is called
[2025-11-19 23:26:43] 2025-11-20 04:25:42,748 | INFO     | --- collectZombieJob: --- 10, [264214]
[2025-11-19 23:26:43] 2025-11-20 04:25:42,748 | INFO     | zombie collector waiting for pid 264214
[2025-11-19 23:26:43] 2025-11-20 04:25:42,748 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 23:26:43] 2025-11-20 04:25:42,749 | INFO     | collected zombie processes
[2025-11-19 23:26:43] 2025-11-20 04:25:42,749 | INFO     | will attempt to kill all subprocesses of pid=264214
[2025-11-19 23:26:43] 2025-11-20 04:25:44,898 | INFO     | process IDs to be killed: [264214] (in reverse order)
[2025-11-19 23:26:43] 2025-11-20 04:25:45,268 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 23:26:43] 2025-11-20 04:25:45,268 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 23:26:43] 2025-11-20 04:25:45,324 | INFO     | did not find any defunct processes belonging to 264214
[2025-11-19 23:26:43] 2025-11-20 04:25:45,352 | INFO     | did not find any defunct processes belonging to 264214
[2025-11-19 23:26:43] 2025-11-20 04:25:45,366 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 23:26:43] 2025-11-20 04:25:45,367 | INFO     | ready for new job
[2025-11-19 23:26:43] 2025-11-20 04:25:45,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 23:26:43] 2025-11-20 04:25:45,497 | INFO     | ***************************************
[2025-11-19 23:26:43] 2025-11-20 04:25:45,497 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 23:26:43] 2025-11-20 04:25:45,498 | INFO     | ***************************************
[2025-11-19 23:26:43] 2025-11-20 04:25:45,498 | INFO     | 
[2025-11-19 23:26:43] 2025-11-20 04:25:45,533 | INFO     | architecture information:
[2025-11-19 23:26:43] 2025-11-20 04:25:45,534 | INFO     | executing command: cat /etc/os-release
[2025-11-19 23:26:43] 2025-11-20 04:25:45,673 | INFO     | cat /etc/os-release:
[2025-11-19 23:26:43] NAME="CentOS Linux"
[2025-11-19 23:26:43] VERSION="7 (Core)"
[2025-11-19 23:26:43] ID="centos"
[2025-11-19 23:26:43] ID_LIKE="rhel fedora"
[2025-11-19 23:26:43] VERSION_ID="7"
[2025-11-19 23:26:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 23:26:43] ANSI_COLOR="0;31"
[2025-11-19 23:26:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 23:26:43] HOME_URL="https://www.centos.org/"
[2025-11-19 23:26:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 23:26:43] 
[2025-11-19 23:26:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 23:26:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 23:26:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 23:26:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 23:26:43] 
[2025-11-19 23:26:43] 2025-11-20 04:25:45,674 | INFO     | ***************************************
[2025-11-19 23:26:43] 2025-11-20 04:25:46,178 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-19 23:26:43] 2025-11-20 04:25:46,227 | INFO     | sufficient remaining disk space (70409781248 B)
[2025-11-19 23:26:43] 2025-11-20 04:25:46,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 23:26:43] 2025-11-20 04:25:46,227 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 23:26:43] 2025-11-20 04:25:46,227 | INFO     | update_server=False
[2025-11-19 23:26:43] 2025-11-20 04:25:46,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 23:26:43] 2025-11-20 04:25:46,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 23:26:43] 2025-11-20 04:25:46,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 23:26:43] 2025-11-20 04:25:46,654 | INFO     | all data control threads have been joined
[2025-11-19 23:26:43] 2025-11-20 04:25:46,673 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-19 23:26:43] 2025-11-20 04:25:46,673 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-19 23:26:43] 2025-11-20 04:25:46,674 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 23:26:43] 2025-11-20 04:25:46,674 | INFO     | will abort loop
[2025-11-19 23:26:43] 2025-11-20 04:25:46,677 | INFO     | all job control threads have been joined
[2025-11-19 23:26:43] 2025-11-20 04:25:47,006 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 23:26:43] 2025-11-20 04:25:47,233 | INFO     | [job] retrieve thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:47,459 | INFO     | all payload control threads have been joined
[2025-11-19 23:26:43] 2025-11-20 04:25:47,476 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:47,587 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:47,604 | INFO     | [job] queue monitor thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:47,661 | INFO     | [data] control thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:47,680 | INFO     | [job] job monitor thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:47,692 | INFO     | [job] control thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:47,693 | INFO     | [payload] failed_post thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:48,155 | INFO     | [job] validate thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:48,172 | INFO     | [data] copytool_in thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:48,235 | INFO     | [data] copytool_out thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:48,390 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:48,465 | INFO     | [payload] control thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:48,506 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:48,532 | INFO     | [payload] validate_post thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:25:51,017 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 23:26:43] 2025-11-20 04:26:17,714 | INFO     | PID=254556 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-19 23:26:43] 2025-11-20 04:26:17,715 | INFO     | .. there are 18 such processes running
[2025-11-19 23:26:43] 2025-11-20 04:26:17,747 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 23:26:43] 2025-11-20 04:26:17,747 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 23:26:43] 2025-11-20 04:26:17,747 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 23:26:43] 2025-11-20 04:26:34,355 | INFO     | [monitor] cgroup control has ended
[2025-11-19 23:26:43] 2025-11-20 04:26:35,526 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140221630162752)>', '<ExcThread(monitor, started 140221135968000)>']
[2025-11-19 23:26:43] 2025-11-20 04:26:35,877 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 23:26:43] 2025-11-20 04:26:35,877 | INFO     | [monitor] control thread has ended
[2025-11-19 23:26:43] 2025-11-20 04:26:40,552 | INFO     | all workflow threads have been joined
[2025-11-19 23:26:43] 2025-11-20 04:26:40,552 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 23:26:43] 2025-11-20 04:26:40,553 | INFO     | traces error code: 0
[2025-11-19 23:26:43] 2025-11-20 04:26:40,554 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 23:26:43] 2025-11-20 04:26:41,339 [wrapper] ==== pilot stdout END ====
[2025-11-19 23:26:43] 2025-11-20 04:26:41,357 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 23:26:43] 2025-11-20 04:26:41,425 [wrapper] pilotpid: 254556
[2025-11-19 23:26:43] 2025-11-20 04:26:41,448 [wrapper] Pilot exit status: 0
[2025-11-19 23:26:43] 2025-11-20 04:26:41,617 [wrapper] pandaids: 6890968605
[2025-11-19 23:26:43] 2025-11-20 04:26:42,013 [wrapper] cleanup supervisor_pilot 3489792 254557
[2025-11-19 23:26:43] 2025-11-20 04:26:42,032 [wrapper] Test setup, not cleaning
[2025-11-19 23:26:43] 2025-11-20 04:26:42,071 [wrapper] apfmon messages muted
[2025-11-19 23:26:43] 2025-11-20 04:26:42,092 [wrapper] ==== wrapper stdout END ====
[2025-11-19 23:26:43] 2025-11-20 04:26:42,144 [wrapper] ==== wrapper stderr END ====
[2025-11-19 23:26:43]  *** Error codes and diagnostics ***
[2025-11-19 23:26:43]     "exeErrorCode": 0,
[2025-11-19 23:26:43]     "exeErrorDiag": "",
[2025-11-19 23:26:43]     "pilotErrorCode": 0,
[2025-11-19 23:26:43]     "pilotErrorDiag": "",
[2025-11-19 23:26:43]  *** Listing of results directory ***
[2025-11-19 23:26:43] total 1343392
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 17 22:56 pilot3.tar.gz
[2025-11-19 23:26:43] -rwx------. 1 boincer umatlas     36292 Nov 17 23:02 runpilot2-wrapper.sh
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 17 23:02 queuedata.json
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas       100 Nov 18 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 23:26:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 18 00:03 run_atlas
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas       105 Nov 18 00:03 job.xml
[2025-11-19 23:26:43] -rw-r--r--. 2 boincer umatlas 408579696 Nov 18 00:03 EVNT.47483658._000120.pool.root.1
[2025-11-19 23:26:43] -rw-r--r--. 2 boincer umatlas     15120 Nov 18 00:03 start_atlas.sh
[2025-11-19 23:26:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 18 00:03 shared
[2025-11-19 23:26:43] -rw-r--r--. 2 boincer umatlas    590094 Nov 18 00:03 input.tar.gz
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas         0 Nov 18 00:03 boinc_lockfile
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas      2773 Nov 18 00:03 pandaJob.out
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas    993193 Nov 18 00:04 agis_schedconf.cvmfs.json
[2025-11-19 23:26:43] drwx------. 5 boincer umatlas      4096 Nov 18 00:05 pilot3
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas       533 Nov 19 22:48 boinc_task_state.xml
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas      6839 Nov 19 23:19 init_data.xml
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas 915871691 Nov 19 23:22 HITS.47483661._001198.pool.root.1
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas      1069 Nov 19 23:24 memory_monitor_summary.json
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas   1525063 Nov 19 23:24 agis_ddmendpoints.agis.ALL.json
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas   3490311 Nov 19 23:24 log.47483661._001198.job.log.tgz.1
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas      8654 Nov 19 23:25 heartbeat.json
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas        95 Nov 19 23:26 pilot_heartbeat.json
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 19 23:26 boinc_mmap_file
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas        29 Nov 19 23:26 wrapper_checkpoint.txt
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas      5009 Nov 19 23:26 pilotlog.txt
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas  20137088 Nov 19 23:26 log.47483661._001198.job.log.1
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas       353 Nov 19 23:26 output.list
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas       620 Nov 19 23:26 runtime_log
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas  23644160 Nov 19 23:26 result.tar.gz
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas      8705 Nov 19 23:26 runtime_log.err
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas       667 Nov 19 23:26 FebMDmN6Rf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmz3qMDmNM42Tm.diag
[2025-11-19 23:26:43] -rw-r--r--. 1 boincer umatlas     21860 Nov 19 23:26 stderr.txt
[2025-11-19 23:26:43] HITS file was successfully produced:
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas 915871691 Nov 19 23:22 shared/HITS.pool.root.1
[2025-11-19 23:26:43]  *** Contents of shared directory: ***
[2025-11-19 23:26:43] total 1317108
[2025-11-19 23:26:43] -rw-r--r--. 2 boincer umatlas 408579696 Nov 18 00:03 ATLAS.root_0
[2025-11-19 23:26:43] -rw-r--r--. 2 boincer umatlas     15120 Nov 18 00:03 start_atlas.sh
[2025-11-19 23:26:43] -rw-r--r--. 2 boincer umatlas    590094 Nov 18 00:03 input.tar.gz
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas 915871691 Nov 19 23:22 HITS.pool.root.1
[2025-11-19 23:26:43] -rw-------. 1 boincer umatlas  23644160 Nov 19 23:26 result.tar.gz
23:26:44 (250238): run_atlas exited; CPU time 273107.805713
23:26:44 (250238): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN