Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:45:29 (1275461): wrapper (7.7.26015): starting
23:45:29 (1275461): wrapper: running run_atlas (--nthreads 9)
[2025-11-17 23:45:29] Arguments: --nthreads 9
[2025-11-17 23:45:29] Threads: 9
[2025-11-17 23:45:29] Checking for CVMFS
[2025-11-17 23:45:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-17 23:45:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-17 23:45:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-17 23:45:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-17 23:45:31] 2.13.3.0 9890 17933 234248 152989 1 406 24631688 32935936 22172 16776704 0 121042526 99.812 57597271 35226 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-17 23:45:31] CVMFS is ok
[2025-11-17 23:45:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-17 23:45:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-17 23:45:31] Further information can be found at the LHC@home message board.
[2025-11-17 23:45:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-17 23:45:31] Checking for apptainer binary...
[2025-11-17 23:45:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-17 23:45:31] Running /usr/bin/apptainer --version
[2025-11-17 23:45:31] apptainer version 1.4.4-1.el9
[2025-11-17 23:45:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-17 23:45:32] c-8-36.aglt2.org
[2025-11-17 23:45:32] apptainer works
[2025-11-17 23:45:32] Set ATHENA_PROC_NUMBER=9
[2025-11-17 23:45:32] Set ATHENA_CORE_NUMBER=9
[2025-11-17 23:45:32] Starting ATLAS job with PandaID=6890966725
[2025-11-17 23:45:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 22:30:12]  *** The last 200 lines of the pilot log: ***
[2025-11-19 22:30:12] 2025-11-20 03:29:01,528 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 22:30:12] 2025-11-20 03:29:01,809 | INFO     | time since job start (168148s) is within the limit (172800.0s)
[2025-11-19 22:30:12] 2025-11-20 03:29:03,816 | INFO     | time since job start (168150s) is within the limit (172800.0s)
[2025-11-19 22:30:12] 2025-11-20 03:29:04,045 | INFO     | monitor loop #6616: job 0:6890966725 is in state 'finished'
[2025-11-19 22:30:12] 2025-11-20 03:29:04,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 22:30:12] 2025-11-20 03:29:05,840 | INFO     | time since job start (168152s) is within the limit (172800.0s)
[2025-11-19 22:30:12] 2025-11-20 03:29:06,558 | INFO     | monitor loop #6617: job 0:6890966725 is in state 'finished'
[2025-11-19 22:30:12] 2025-11-20 03:29:06,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 22:30:12] 2025-11-20 03:29:07,387 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-19 22:30:12] 2025-11-20 03:29:07,439 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1925500000007
[2025-11-19 22:30:12] 2025-11-20 03:29:07,502 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6890966725/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 22:30:12] 2025-11-20 03:29:07,503 | INFO     | extracted standard info from prmon json
[2025-11-19 22:30:12] 2025-11-20 03:29:07,503 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 22:30:12] 2025-11-20 03:29:07,504 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 22:30:12] 2025-11-20 03:29:08,115 | INFO     | time since job start (168155s) is within the limit (172800.0s)
[2025-11-19 22:30:12] 2025-11-20 03:29:08,239 | INFO     | fitting pss+swap vs Time
[2025-11-19 22:30:12] 2025-11-20 03:29:08,374 | INFO     | sum of square deviations: 6476685399492.797
[2025-11-19 22:30:12] 2025-11-20 03:29:09,432 | INFO     | monitor loop #6618: job 0:6890966725 is in state 'finished'
[2025-11-19 22:30:12] 2025-11-20 03:29:09,493 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 22:30:12] 2025-11-20 03:29:09,850 | INFO     | sum of deviations: -10035516804153.385
[2025-11-19 22:30:12] 2025-11-20 03:29:09,851 | INFO     | mean x: 1763525283.1859114
[2025-11-19 22:30:12] 2025-11-20 03:29:09,851 | INFO     | mean y: 3066146.7487291214
[2025-11-19 22:30:12] 2025-11-20 03:29:09,851 | INFO     | intersect: 2735619377.657171
[2025-11-19 22:30:12] 2025-11-20 03:29:09,876 | INFO     | chi2: 87.74280873697998
[2025-11-19 22:30:12] 2025-11-20 03:29:09,902 | INFO     | sum of square deviations: 6441480065355.396
[2025-11-19 22:30:12] 2025-11-20 03:29:10,254 | INFO     | time since job start (168157s) is within the limit (172800.0s)
[2025-11-19 22:30:12] 2025-11-20 03:29:11,484 | INFO     | sum of deviations: -8847793307583.48
[2025-11-19 22:30:12] 2025-11-20 03:29:11,485 | INFO     | mean x: 1763525130.7035286
[2025-11-19 22:30:12] 2025-11-20 03:29:11,485 | INFO     | mean y: 3071291.05092761
[2025-11-19 22:30:12] 2025-11-20 03:29:11,485 | INFO     | intersect: 2425388164.0183954
[2025-11-19 22:30:12] 2025-11-20 03:29:11,600 | INFO     | chi2: 82.73339973680295
[2025-11-19 22:30:12] 2025-11-20 03:29:11,601 | INFO     | current chi2=82.73339973680295 (change=5.709196083742154 %)
[2025-11-19 22:30:12] 2025-11-20 03:29:11,601 | INFO     | right removable region: 2748
[2025-11-19 22:30:12] 2025-11-20 03:29:11,740 | INFO     | sum of square deviations: 6441463793605.371
[2025-11-19 22:30:12] 2025-11-20 03:29:12,122 | INFO     | monitor loop #6619: job 0:6890966725 is in state 'finished'
[2025-11-19 22:30:12] 2025-11-20 03:29:12,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 22:30:12] 2025-11-20 03:29:12,616 | INFO     | time since job start (168159s) is within the limit (172800.0s)
[2025-11-19 22:30:12] 2025-11-20 03:29:12,867 | INFO     | sum of deviations: -11204103093058.312
[2025-11-19 22:30:12] 2025-11-20 03:29:12,867 | INFO     | mean x: 1763525435.7035286
[2025-11-19 22:30:12] 2025-11-20 03:29:12,869 | INFO     | mean y: 3071206.506365951
[2025-11-19 22:30:12] 2025-11-20 03:29:12,869 | INFO     | intersect: 3070498335.176711
[2025-11-19 22:30:12] 2025-11-20 03:29:12,878 | INFO     | chi2: 83.82797546577714
[2025-11-19 22:30:12] 2025-11-20 03:29:12,878 | INFO     | current chi2=83.82797546577714 (change=4.4617141023352 %)
[2025-11-19 22:30:12] 2025-11-20 03:29:12,878 | INFO     | left removable region: 10
[2025-11-19 22:30:12] 2025-11-20 03:29:12,886 | INFO     | sum of square deviations: 6364445703831.432
[2025-11-19 22:30:12] 2025-11-20 03:29:14,011 | INFO     | sum of deviations: -10551179323081.336
[2025-11-19 22:30:12] 2025-11-20 03:29:14,011 | INFO     | mean x: 1763525405.2414172
[2025-11-19 22:30:12] 2025-11-20 03:29:14,011 | INFO     | mean y: 3080409.6555880206
[2025-11-19 22:30:12] 2025-11-20 03:29:14,012 | INFO     | intersect: 2926708586.7818685
[2025-11-19 22:30:12] 2025-11-20 03:29:14,020 | INFO     | chi2: 76.38154658514996
[2025-11-19 22:30:12] 2025-11-20 03:29:14,020 | INFO     | current memory leak: -1.66 B/s (using 2738 data points, chi2=76.38)
[2025-11-19 22:30:12] 2025-11-20 03:29:14,030 | INFO     | could have reported an average CPU frequency of 2600 MHz (93 samples)
[2025-11-19 22:30:12] 2025-11-20 03:29:14,030 | INFO     | ..............................
[2025-11-19 22:30:12] 2025-11-20 03:29:14,031 | INFO     | . Timing measurements:
[2025-11-19 22:30:12] 2025-11-20 03:29:14,031 | INFO     | . get job = 0 s
[2025-11-19 22:30:12] 2025-11-20 03:29:14,031 | INFO     | . initial setup = 4 s
[2025-11-19 22:30:12] 2025-11-20 03:29:14,031 | INFO     | . payload setup = 22 s
[2025-11-19 22:30:12] 2025-11-20 03:29:14,031 | INFO     | . stage-in = 0 s
[2025-11-19 22:30:12] 2025-11-20 03:29:14,031 | INFO     | . payload execution = 167969 s
[2025-11-19 22:30:12] 2025-11-20 03:29:14,031 | INFO     | . stage-out = 23 s
[2025-11-19 22:30:12] 2025-11-20 03:29:14,031 | INFO     | . log creation = 8 s
[2025-11-19 22:30:12] 2025-11-20 03:29:14,031 | INFO     | ..............................
[2025-11-19 22:30:12] 2025-11-20 03:29:14,277 | INFO     | 
[2025-11-19 22:30:12] 2025-11-20 03:29:14,277 | INFO     | job summary report
[2025-11-19 22:30:12] 2025-11-20 03:29:14,277 | INFO     | --------------------------------------------------
[2025-11-19 22:30:12] 2025-11-20 03:29:14,277 | INFO     | PanDA job id: 6890966725
[2025-11-19 22:30:12] 2025-11-20 03:29:14,278 | INFO     | task id: 47483661
[2025-11-19 22:30:12] 2025-11-20 03:29:14,278 | INFO     | errors: (none)
[2025-11-19 22:30:12] 2025-11-20 03:29:14,278 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 22:30:12] 2025-11-20 03:29:14,278 | INFO     | pilot state: finished 
[2025-11-19 22:30:12] 2025-11-20 03:29:14,278 | INFO     | transexitcode: 0
[2025-11-19 22:30:12] 2025-11-20 03:29:14,278 | INFO     | exeerrorcode: 0
[2025-11-19 22:30:12] 2025-11-20 03:29:14,278 | INFO     | exeerrordiag: 
[2025-11-19 22:30:12] 2025-11-20 03:29:14,278 | INFO     | exitcode: 0
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | exitmsg: OK
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | cpuconsumptiontime: 309756 s
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | nevents: 1000
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | neventsw: 0
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | pid: 1306458
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | pgrp: 1306458
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | corecount: 9
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | event service: False
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | sizes: {0: 2298454, 2: 2298653, 3: 2298653, 14: 2298681, 24: 2298709, 27: 2298999, 35: 2299155, 167996: 2393432, 167997: 2393431, 168024: 2402755, 168028: 2402811,
[2025-11-19 22:30:12] 2025-11-20 03:29:14,279 | INFO     | --------------------------------------------------
[2025-11-19 22:30:12] 2025-11-20 03:29:14,280 | INFO     | 
[2025-11-19 22:30:12] 2025-11-20 03:29:14,306 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-19 22:30:12] 2025-11-20 03:29:14,635 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,640 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,640 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,640 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,640 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,640 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,640 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,640 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,640 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,640 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,641 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 22:30:12] 2025-11-20 03:29:14,642 | INFO     | job 6890966725 has completed (purged errors)
[2025-11-19 22:30:12] 2025-11-20 03:29:14,643 | INFO     | overall cleanup function is called
[2025-11-19 22:30:12] 2025-11-20 03:29:15,808 | INFO     | --- collectZombieJob: --- 10, [1306458]
[2025-11-19 22:30:12] 2025-11-20 03:29:15,808 | INFO     | zombie collector waiting for pid 1306458
[2025-11-19 22:30:12] 2025-11-20 03:29:15,808 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 22:30:12] 2025-11-20 03:29:15,809 | INFO     | collected zombie processes
[2025-11-19 22:30:12] 2025-11-20 03:29:15,809 | INFO     | will attempt to kill all subprocesses of pid=1306458
[2025-11-19 22:30:12] 2025-11-20 03:29:18,113 | INFO     | process IDs to be killed: [1306458] (in reverse order)
[2025-11-19 22:30:12] 2025-11-20 03:29:18,415 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 22:30:12] 2025-11-20 03:29:18,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 22:30:12] 2025-11-20 03:29:18,505 | INFO     | did not find any defunct processes belonging to 1306458
[2025-11-19 22:30:12] 2025-11-20 03:29:18,553 | INFO     | did not find any defunct processes belonging to 1306458
[2025-11-19 22:30:12] 2025-11-20 03:29:18,555 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 22:30:12] 2025-11-20 03:29:18,555 | INFO     | ready for new job
[2025-11-19 22:30:12] 2025-11-20 03:29:18,555 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 22:30:12] 2025-11-20 03:29:18,563 | INFO     | ***************************************
[2025-11-19 22:30:12] 2025-11-20 03:29:18,564 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 22:30:12] 2025-11-20 03:29:18,564 | INFO     | ***************************************
[2025-11-19 22:30:12] 2025-11-20 03:29:18,564 | INFO     | 
[2025-11-19 22:30:12] 2025-11-20 03:29:18,566 | INFO     | architecture information:
[2025-11-19 22:30:12] 2025-11-20 03:29:18,566 | INFO     | executing command: cat /etc/os-release
[2025-11-19 22:30:12] 2025-11-20 03:29:18,810 | INFO     | cat /etc/os-release:
[2025-11-19 22:30:12] NAME="CentOS Linux"
[2025-11-19 22:30:12] VERSION="7 (Core)"
[2025-11-19 22:30:12] ID="centos"
[2025-11-19 22:30:12] ID_LIKE="rhel fedora"
[2025-11-19 22:30:12] VERSION_ID="7"
[2025-11-19 22:30:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 22:30:12] ANSI_COLOR="0;31"
[2025-11-19 22:30:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 22:30:12] HOME_URL="https://www.centos.org/"
[2025-11-19 22:30:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 22:30:12] 
[2025-11-19 22:30:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 22:30:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 22:30:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 22:30:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 22:30:12] 
[2025-11-19 22:30:12] 2025-11-20 03:29:18,811 | INFO     | ***************************************
[2025-11-19 22:30:12] 2025-11-20 03:29:19,314 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-19 22:30:12] 2025-11-20 03:29:19,729 | INFO     | sufficient remaining disk space (72848769024 B)
[2025-11-19 22:30:12] 2025-11-20 03:29:19,743 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 22:30:12] 2025-11-20 03:29:19,743 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 22:30:12] 2025-11-20 03:29:19,743 | INFO     | update_server=False
[2025-11-19 22:30:12] 2025-11-20 03:29:19,743 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 22:30:12] 2025-11-20 03:29:19,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 22:30:12] 2025-11-20 03:29:19,943 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-19 22:30:12] 2025-11-20 03:29:19,943 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-19 22:30:12] 2025-11-20 03:29:19,943 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 22:30:12] 2025-11-20 03:29:19,943 | INFO     | will abort loop
[2025-11-19 22:30:12] 2025-11-20 03:29:19,989 | INFO     | all data control threads have been joined
[2025-11-19 22:30:12] 2025-11-20 03:29:20,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 22:30:12] 2025-11-20 03:29:20,749 | INFO     | [job] retrieve thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:20,779 | INFO     | [job] queue monitor thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:20,822 | INFO     | all job control threads have been joined
[2025-11-19 22:30:12] 2025-11-20 03:29:20,885 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:20,949 | INFO     | [job] job monitor thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:20,995 | INFO     | [data] control thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:21,004 | INFO     | [payload] validate_post thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:21,119 | INFO     | all payload control threads have been joined
[2025-11-19 22:30:12] 2025-11-20 03:29:21,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 22:30:12] 2025-11-20 03:29:21,634 | INFO     | [payload] failed_post thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:21,743 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:21,753 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:21,763 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:21,769 | INFO     | [data] copytool_in thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:21,785 | INFO     | [job] validate thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:21,852 | INFO     | [job] control thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:22,125 | INFO     | [payload] control thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:22,366 | INFO     | [data] copytool_out thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:25,494 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 22:30:12] 2025-11-20 03:29:55,358 | INFO     | PID=1286689 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 22:30:12] 2025-11-20 03:29:55,359 | INFO     | .. there are 35 such processes running
[2025-11-19 22:30:12] 2025-11-20 03:29:55,371 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 22:30:12] 2025-11-20 03:29:55,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 22:30:12] 2025-11-20 03:29:55,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 22:30:12] 2025-11-20 03:30:00,653 | INFO     | [monitor] cgroup control has ended
[2025-11-19 22:30:12] 2025-11-20 03:30:02,301 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139638977943360)>', '<ExcThread(monitor, started 139638463239936)>']
[2025-11-19 22:30:12] 2025-11-20 03:30:02,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 22:30:12] 2025-11-20 03:30:02,506 | INFO     | [monitor] control thread has ended
[2025-11-19 22:30:12] 2025-11-20 03:30:07,327 | INFO     | all workflow threads have been joined
[2025-11-19 22:30:12] 2025-11-20 03:30:07,328 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 22:30:12] 2025-11-20 03:30:07,329 | INFO     | traces error code: 0
[2025-11-19 22:30:12] 2025-11-20 03:30:07,329 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 22:30:12] 2025-11-20 03:30:10,627 [wrapper] ==== pilot stdout END ====
[2025-11-19 22:30:12] 2025-11-20 03:30:10,646 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 22:30:12] 2025-11-20 03:30:10,673 [wrapper] pilotpid: 1286689
[2025-11-19 22:30:12] 2025-11-20 03:30:10,712 [wrapper] Pilot exit status: 0
[2025-11-19 22:30:12] 2025-11-20 03:30:10,902 [wrapper] pandaids: 6890966725
[2025-11-19 22:30:12] 2025-11-20 03:30:11,137 [wrapper] cleanup supervisor_pilot 2628582 1286690
[2025-11-19 22:30:12] 2025-11-20 03:30:11,141 [wrapper] Test setup, not cleaning
[2025-11-19 22:30:12] 2025-11-20 03:30:11,169 [wrapper] apfmon messages muted
[2025-11-19 22:30:12] 2025-11-20 03:30:11,193 [wrapper] ==== wrapper stdout END ====
[2025-11-19 22:30:12] 2025-11-20 03:30:11,208 [wrapper] ==== wrapper stderr END ====
[2025-11-19 22:30:12]  *** Error codes and diagnostics ***
[2025-11-19 22:30:12]     "exeErrorCode": 0,
[2025-11-19 22:30:12]     "exeErrorDiag": "",
[2025-11-19 22:30:12]     "pilotErrorCode": 0,
[2025-11-19 22:30:12]     "pilotErrorDiag": "",
[2025-11-19 22:30:12]  *** Listing of results directory ***
[2025-11-19 22:30:12] total 1342412
[2025-11-19 22:30:12] -rwx------. 1 boincer umatlas     36292 Nov 17 22:56 runpilot2-wrapper.sh
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 17 22:56 queuedata.json
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 17 22:56 pilot3.tar.gz
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas       100 Nov 17 23:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 22:30:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 17 23:45 run_atlas
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas       105 Nov 17 23:45 job.xml
[2025-11-19 22:30:12] -rw-r--r--. 2 boincer umatlas 413063512 Nov 17 23:45 EVNT.47483658._000014.pool.root.1
[2025-11-19 22:30:12] -rw-r--r--. 2 boincer umatlas     15120 Nov 17 23:45 start_atlas.sh
[2025-11-19 22:30:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 17 23:45 shared
[2025-11-19 22:30:12] -rw-r--r--. 2 boincer umatlas    590084 Nov 17 23:45 input.tar.gz
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas         0 Nov 17 23:45 boinc_lockfile
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas      2768 Nov 17 23:45 pandaJob.out
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas    993193 Nov 17 23:46 agis_schedconf.cvmfs.json
[2025-11-19 22:30:12] drwx------. 5 boincer umatlas      4096 Nov 17 23:46 pilot3
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas       533 Nov 19 19:38 boinc_task_state.xml
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas 918837580 Nov 19 22:22 HITS.47483661._000621.pool.root.1
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas      1065 Nov 19 22:27 memory_monitor_summary.json
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas   1525063 Nov 19 22:27 agis_ddmendpoints.agis.ALL.json
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas   3165807 Nov 19 22:27 log.47483661._000621.job.log.tgz.1
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas      8630 Nov 19 22:29 heartbeat.json
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas        95 Nov 19 22:29 pilot_heartbeat.json
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas      6660 Nov 19 22:30 init_data.xml
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas      5010 Nov 19 22:30 pilotlog.txt
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas  16246598 Nov 19 22:30 log.47483661._000621.job.log.1
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas        29 Nov 19 22:30 wrapper_checkpoint.txt
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas       353 Nov 19 22:30 output.list
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 19 22:30 boinc_mmap_file
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas       620 Nov 19 22:30 runtime_log
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas  19435520 Nov 19 22:30 result.tar.gz
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas      8695 Nov 19 22:30 runtime_log.err
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas       661 Nov 19 22:30 DHLODm7zRf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmq6JODmpBJS4n.diag
[2025-11-19 22:30:12] -rw-r--r--. 1 boincer umatlas      2140 Nov 19 22:30 stderr.txt
[2025-11-19 22:30:12] HITS file was successfully produced:
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas 918837580 Nov 19 22:22 shared/HITS.pool.root.1
[2025-11-19 22:30:12]  *** Contents of shared directory: ***
[2025-11-19 22:30:12] total 1320268
[2025-11-19 22:30:12] -rw-r--r--. 2 boincer umatlas 413063512 Nov 17 23:45 ATLAS.root_0
[2025-11-19 22:30:12] -rw-r--r--. 2 boincer umatlas     15120 Nov 17 23:45 start_atlas.sh
[2025-11-19 22:30:12] -rw-r--r--. 2 boincer umatlas    590084 Nov 17 23:45 input.tar.gz
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas 918837580 Nov 19 22:22 HITS.pool.root.1
[2025-11-19 22:30:12] -rw-------. 1 boincer umatlas  19435520 Nov 19 22:30 result.tar.gz
22:30:33 (1275461): run_atlas exited; CPU time 313597.129323
22:30:33 (1275461): called boinc_finish(0)

</stderr_txt>
]]>

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