Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:00:51 (1140696): wrapper (7.7.26015): starting
22:00:51 (1140696): wrapper: running run_atlas (--nthreads 8)
[2025-11-17 22:00:51] Arguments: --nthreads 8
[2025-11-17 22:00:51] Threads: 8
[2025-11-17 22:00:51] Checking for CVMFS
[2025-11-17 22:00:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-17 22:00:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-17 22:00:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-17 22:00:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-17 22:00:52] 2.13.2.0 10183 21755 175576 152985 3 304 21614868 39288832 7528 16776704 0 9342239 99.282 14263813 38053 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-17 22:00:52] CVMFS is ok
[2025-11-17 22:00:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-17 22:00:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-17 22:00:52] Further information can be found at the LHC@home message board.
[2025-11-17 22:00:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-17 22:00:52] Checking for apptainer binary...
[2025-11-17 22:00:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-17 22:00:52] Running /usr/bin/apptainer --version
[2025-11-17 22:00:52] apptainer version 1.4.4-1.el9
[2025-11-17 22:00:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-17 22:00:52] c-210-5.aglt2.org
[2025-11-17 22:00:52] apptainer works
[2025-11-17 22:00:52] Set ATHENA_PROC_NUMBER=8
[2025-11-17 22:00:52] Set ATHENA_CORE_NUMBER=8
[2025-11-17 22:00:52] Starting ATLAS job with PandaID=6890933243
[2025-11-17 22:00:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 21:28:40]  *** The last 200 lines of the pilot log: ***
[2025-11-19 21:28:40] 2025-11-20 02:27:48,964 | INFO     | preparing for final server update for job 6890933243 in state='finished'
[2025-11-19 21:28:40] 2025-11-20 02:27:48,965 | INFO     | this job has now completed (state=finished)
[2025-11-19 21:28:40] 2025-11-20 02:27:48,965 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-19 21:28:40] 2025-11-20 02:27:48,965 | INFO     | log transfer has been attempted: DONE
[2025-11-19 21:28:40] 2025-11-20 02:27:48,965 | INFO     | job 6890933243 has finished - writing final server update
[2025-11-19 21:28:40] 2025-11-20 02:27:48,966 | INFO     | total number of processed events: 1000 (read)
[2025-11-19 21:28:40] 2025-11-20 02:27:48,966 | INFO     | executing command: lscpu
[2025-11-19 21:28:40] 2025-11-20 02:27:49,031 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-19 21:28:40] 2025-11-20 02:27:50,369 | INFO     | monitor loop #9535: job 0:6890933243 is in state 'finished'
[2025-11-19 21:28:40] 2025-11-20 02:27:50,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 21:28:40] 2025-11-20 02:27:50,918 | INFO     | time since job start (170807s) is within the limit (172800.0s)
[2025-11-19 21:28:40] 2025-11-20 02:27:52,873 | INFO     | monitor loop #9536: job 0:6890933243 is in state 'finished'
[2025-11-19 21:28:40] 2025-11-20 02:27:52,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 21:28:40] 2025-11-20 02:27:52,924 | INFO     | time since job start (170809s) is within the limit (172800.0s)
[2025-11-19 21:28:40] 2025-11-20 02:27:54,685 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-19 21:28:40] 2025-11-20 02:27:54,736 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8605999999995
[2025-11-19 21:28:40] 2025-11-20 02:27:54,754 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6890933243/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 21:28:40] 2025-11-20 02:27:54,755 | INFO     | extracted standard info from prmon json
[2025-11-19 21:28:40] 2025-11-20 02:27:54,755 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 21:28:40] 2025-11-20 02:27:54,755 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 21:28:40] 2025-11-20 02:27:54,880 | INFO     | fitting pss+swap vs Time
[2025-11-19 21:28:40] 2025-11-20 02:27:54,885 | INFO     | sum of square deviations: 6807326197166.991
[2025-11-19 21:28:40] 2025-11-20 02:27:54,958 | INFO     | time since job start (170811s) is within the limit (172800.0s)
[2025-11-19 21:28:40] 2025-11-20 02:27:55,237 | INFO     | sum of deviations: 11316149738576.07
[2025-11-19 21:28:40] 2025-11-20 02:27:55,237 | INFO     | mean x: 1763520266.45
[2025-11-19 21:28:40] 2025-11-20 02:27:55,237 | INFO     | mean y: 2999500.775357143
[2025-11-19 21:28:40] 2025-11-20 02:27:55,237 | INFO     | intersect: -2928586091.592315
[2025-11-19 21:28:40] 2025-11-20 02:27:55,241 | INFO     | chi2: 17.3333558423604
[2025-11-19 21:28:40] 2025-11-20 02:27:55,245 | INFO     | sum of square deviations: 6770931412515.125
[2025-11-19 21:28:40] 2025-11-20 02:27:55,442 | INFO     | sum of deviations: 12334560629056.783
[2025-11-19 21:28:40] 2025-11-20 02:27:55,442 | INFO     | mean x: 1763520113.9624329
[2025-11-19 21:28:40] 2025-11-20 02:27:55,442 | INFO     | mean y: 3003767.721645796
[2025-11-19 21:28:40] 2025-11-20 02:27:55,442 | INFO     | intersect: -3209589070.8389034
[2025-11-19 21:28:40] 2025-11-20 02:27:55,446 | INFO     | chi2: 13.92598808617593
[2025-11-19 21:28:40] 2025-11-20 02:27:55,446 | INFO     | current chi2=13.92598808617593 (change=19.657865373405187 %)
[2025-11-19 21:28:40] 2025-11-20 02:27:55,446 | INFO     | right removable region: 2794
[2025-11-19 21:28:40] 2025-11-20 02:27:55,450 | INFO     | sum of square deviations: 6770919883174.895
[2025-11-19 21:28:40] 2025-11-20 02:27:55,459 | INFO     | monitor loop #9537: job 0:6890933243 is in state 'finished'
[2025-11-19 21:28:40] 2025-11-20 02:27:55,459 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 21:28:40] 2025-11-20 02:27:55,828 | INFO     | sum of deviations: 10604976878323.824
[2025-11-19 21:28:40] 2025-11-20 02:27:55,829 | INFO     | mean x: 1763520418.9617174
[2025-11-19 21:28:40] 2025-11-20 02:27:55,829 | INFO     | mean y: 3002478.3906976744
[2025-11-19 21:28:40] 2025-11-20 02:27:55,829 | INFO     | intersect: -2759117527.491209
[2025-11-19 21:28:40] 2025-11-20 02:27:55,836 | INFO     | chi2: 15.45062762698971
[2025-11-19 21:28:40] 2025-11-20 02:27:55,836 | INFO     | current chi2=15.45062762698971 (change=10.861879445003689 %)
[2025-11-19 21:28:40] 2025-11-20 02:27:55,836 | INFO     | left removable region: 10
[2025-11-19 21:28:40] 2025-11-20 02:27:55,844 | INFO     | sum of square deviations: 6691297958093.507
[2025-11-19 21:28:40] 2025-11-20 02:27:56,028 | INFO     | sum of deviations: 11596449871768.182
[2025-11-19 21:28:40] 2025-11-20 02:27:56,029 | INFO     | mean x: 1763520388.4867098
[2025-11-19 21:28:40] 2025-11-20 02:27:56,029 | INFO     | mean y: 3008815.41091954
[2025-11-19 21:28:40] 2025-11-20 02:27:56,029 | INFO     | intersect: -3053285480.7041025
[2025-11-19 21:28:40] 2025-11-20 02:27:56,032 | INFO     | chi2: 11.071011458605561
[2025-11-19 21:28:40] 2025-11-20 02:27:56,033 | INFO     | current memory leak: 1.73 B/s (using 2784 data points, chi2=11.07)
[2025-11-19 21:28:40] 2025-11-20 02:27:56,035 | INFO     | could have reported an average CPU frequency of 2599 MHz (96 samples)
[2025-11-19 21:28:40] 2025-11-20 02:27:56,035 | INFO     | ..............................
[2025-11-19 21:28:40] 2025-11-20 02:27:56,036 | INFO     | . Timing measurements:
[2025-11-19 21:28:40] 2025-11-20 02:27:56,036 | INFO     | . get job = 0 s
[2025-11-19 21:28:40] 2025-11-20 02:27:56,036 | INFO     | . initial setup = 2 s
[2025-11-19 21:28:40] 2025-11-20 02:27:56,036 | INFO     | . payload setup = 6 s
[2025-11-19 21:28:40] 2025-11-20 02:27:56,036 | INFO     | . stage-in = 0 s
[2025-11-19 21:28:40] 2025-11-20 02:27:56,036 | INFO     | . payload execution = 170774 s
[2025-11-19 21:28:40] 2025-11-20 02:27:56,036 | INFO     | . stage-out = 4 s
[2025-11-19 21:28:40] 2025-11-20 02:27:56,036 | INFO     | . log creation = 1 s
[2025-11-19 21:28:40] 2025-11-20 02:27:56,036 | INFO     | ..............................
[2025-11-19 21:28:40] 2025-11-20 02:27:56,450 | INFO     | 
[2025-11-19 21:28:40] 2025-11-20 02:27:56,451 | INFO     | job summary report
[2025-11-19 21:28:40] 2025-11-20 02:27:56,451 | INFO     | --------------------------------------------------
[2025-11-19 21:28:40] 2025-11-20 02:27:56,451 | INFO     | PanDA job id: 6890933243
[2025-11-19 21:28:40] 2025-11-20 02:27:56,451 | INFO     | task id: 47483661
[2025-11-19 21:28:40] 2025-11-20 02:27:56,451 | INFO     | errors: (none)
[2025-11-19 21:28:40] 2025-11-20 02:27:56,451 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 21:28:40] 2025-11-20 02:27:56,451 | INFO     | pilot state: finished 
[2025-11-19 21:28:40] 2025-11-20 02:27:56,452 | INFO     | transexitcode: 0
[2025-11-19 21:28:40] 2025-11-20 02:27:56,452 | INFO     | exeerrorcode: 0
[2025-11-19 21:28:40] 2025-11-20 02:27:56,452 | INFO     | exeerrordiag: 
[2025-11-19 21:28:40] 2025-11-20 02:27:56,452 | INFO     | exitcode: 0
[2025-11-19 21:28:40] 2025-11-20 02:27:56,452 | INFO     | exitmsg: OK
[2025-11-19 21:28:40] 2025-11-20 02:27:56,452 | INFO     | cpuconsumptiontime: 321858 s
[2025-11-19 21:28:40] 2025-11-20 02:27:56,452 | INFO     | nevents: 1000
[2025-11-19 21:28:40] 2025-11-20 02:27:56,452 | INFO     | neventsw: 0
[2025-11-19 21:28:40] 2025-11-20 02:27:56,453 | INFO     | pid: 1165524
[2025-11-19 21:28:40] 2025-11-20 02:27:56,453 | INFO     | pgrp: 1165524
[2025-11-19 21:28:40] 2025-11-20 02:27:56,453 | INFO     | corecount: 8
[2025-11-19 21:28:40] 2025-11-20 02:27:56,453 | INFO     | event service: False
[2025-11-19 21:28:40] 2025-11-20 02:27:56,453 | INFO     | sizes: {0: 2298460, 1: 2298659, 5: 2298921, 12: 2298977, 170784: 2402557, 170789: 2411825, 170790: 2412009, 170797: 2412255}
[2025-11-19 21:28:40] 2025-11-20 02:27:56,454 | INFO     | --------------------------------------------------
[2025-11-19 21:28:40] 2025-11-20 02:27:56,454 | INFO     | 
[2025-11-19 21:28:40] 2025-11-20 02:27:56,454 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-19 21:28:40] 2025-11-20 02:27:56,592 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,593 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,593 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,593 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,593 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,593 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,593 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,593 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,593 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,593 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,594 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,594 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,594 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,594 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,594 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,594 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,594 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,594 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 21:28:40] 2025-11-20 02:27:56,594 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,595 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 21:28:40] 2025-11-20 02:27:56,595 | INFO     | job 6890933243 has completed (purged errors)
[2025-11-19 21:28:40] 2025-11-20 02:27:56,595 | INFO     | overall cleanup function is called
[2025-11-19 21:28:40] 2025-11-20 02:27:57,610 | INFO     | --- collectZombieJob: --- 10, [1165524]
[2025-11-19 21:28:40] 2025-11-20 02:27:57,611 | INFO     | zombie collector waiting for pid 1165524
[2025-11-19 21:28:40] 2025-11-20 02:27:57,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 21:28:40] 2025-11-20 02:27:57,611 | INFO     | collected zombie processes
[2025-11-19 21:28:40] 2025-11-20 02:27:57,611 | INFO     | will attempt to kill all subprocesses of pid=1165524
[2025-11-19 21:28:40] 2025-11-20 02:27:57,852 | INFO     | process IDs to be killed: [1165524] (in reverse order)
[2025-11-19 21:28:40] 2025-11-20 02:27:57,923 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 21:28:40] 2025-11-20 02:27:57,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 21:28:40] 2025-11-20 02:27:57,932 | INFO     | did not find any defunct processes belonging to 1165524
[2025-11-19 21:28:40] 2025-11-20 02:27:57,939 | INFO     | did not find any defunct processes belonging to 1165524
[2025-11-19 21:28:40] 2025-11-20 02:27:57,941 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 21:28:40] 2025-11-20 02:27:57,941 | INFO     | ready for new job
[2025-11-19 21:28:40] 2025-11-20 02:27:57,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 21:28:40] 2025-11-20 02:27:57,952 | INFO     | ***************************************
[2025-11-19 21:28:40] 2025-11-20 02:27:57,952 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 21:28:40] 2025-11-20 02:27:57,952 | INFO     | ***************************************
[2025-11-19 21:28:40] 2025-11-20 02:27:57,953 | INFO     | 
[2025-11-19 21:28:40] 2025-11-20 02:27:57,955 | INFO     | architecture information:
[2025-11-19 21:28:40] 2025-11-20 02:27:57,955 | INFO     | executing command: cat /etc/os-release
[2025-11-19 21:28:40] 2025-11-20 02:27:57,970 | INFO     | cat /etc/os-release:
[2025-11-19 21:28:40] NAME="CentOS Linux"
[2025-11-19 21:28:40] VERSION="7 (Core)"
[2025-11-19 21:28:40] ID="centos"
[2025-11-19 21:28:40] ID_LIKE="rhel fedora"
[2025-11-19 21:28:40] VERSION_ID="7"
[2025-11-19 21:28:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 21:28:40] ANSI_COLOR="0;31"
[2025-11-19 21:28:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 21:28:40] HOME_URL="https://www.centos.org/"
[2025-11-19 21:28:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 21:28:40] 
[2025-11-19 21:28:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 21:28:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 21:28:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 21:28:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 21:28:40] 
[2025-11-19 21:28:40] 2025-11-20 02:27:57,971 | INFO     | ***************************************
[2025-11-19 21:28:40] 2025-11-20 02:27:58,474 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-19 21:28:40] 2025-11-20 02:27:58,493 | INFO     | sufficient remaining disk space (49710891008 B)
[2025-11-19 21:28:40] 2025-11-20 02:27:58,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 21:28:40] 2025-11-20 02:27:58,494 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 21:28:40] 2025-11-20 02:27:58,494 | INFO     | update_server=False
[2025-11-19 21:28:40] 2025-11-20 02:27:58,494 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 21:28:40] 2025-11-20 02:27:58,633 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 21:28:40] 2025-11-20 02:27:58,666 | INFO     | all payload control threads have been joined
[2025-11-19 21:28:40] 2025-11-20 02:27:58,947 | INFO     | all data control threads have been joined
[2025-11-19 21:28:40] 2025-11-20 02:27:58,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 21:28:40] 2025-11-20 02:27:58,976 | INFO     | aborting loop
[2025-11-19 21:28:40] 2025-11-20 02:27:59,487 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 21:28:40] 2025-11-20 02:27:59,500 | INFO     | [job] retrieve thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:27:59,671 | INFO     | [payload] control thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:27:59,677 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:27:59,953 | INFO     | [data] control thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:27:59,981 | INFO     | [job] job monitor thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:00,019 | INFO     | all job control threads have been joined
[2025-11-19 21:28:40] 2025-11-20 02:28:00,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:00,477 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:00,503 | INFO     | [job] validate thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:00,638 | INFO     | [data] copytool_out thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:00,677 | INFO     | [payload] validate_post thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:00,886 | INFO     | [data] copytool_in thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:00,918 | INFO     | [payload] failed_post thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:00,994 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:01,025 | INFO     | [job] control thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:01,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 21:28:40] 2025-11-20 02:28:02,235 | INFO     | [job] queue monitor thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:03,495 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 21:28:40] 2025-11-20 02:28:28,284 | INFO     | PID=1145907 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 21:28:40] 2025-11-20 02:28:28,284 | INFO     | .. there are 7 such processes running
[2025-11-19 21:28:40] 2025-11-20 02:28:28,285 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 21:28:40] 2025-11-20 02:28:28,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 21:28:40] 2025-11-20 02:28:28,285 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 21:28:40] 2025-11-20 02:28:34,852 | INFO     | [monitor] cgroup control has ended
[2025-11-19 21:28:40] 2025-11-20 02:28:34,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139970889496384)>', '<ExcThread(monitor, started 139969955882752)>']
[2025-11-19 21:28:40] 2025-11-20 02:28:35,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 21:28:40] 2025-11-20 02:28:35,325 | INFO     | [monitor] control thread has ended
[2025-11-19 21:28:40] 2025-11-20 02:28:39,889 | INFO     | all workflow threads have been joined
[2025-11-19 21:28:40] 2025-11-20 02:28:39,889 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 21:28:40] 2025-11-20 02:28:39,889 | INFO     | traces error code: 0
[2025-11-19 21:28:40] 2025-11-20 02:28:39,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 21:28:40] 2025-11-20 02:28:40,096 [wrapper] ==== pilot stdout END ====
[2025-11-19 21:28:40] 2025-11-20 02:28:40,099 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 21:28:40] 2025-11-20 02:28:40,101 [wrapper] pilotpid: 1145907
[2025-11-19 21:28:40] 2025-11-20 02:28:40,103 [wrapper] Pilot exit status: 0
[2025-11-19 21:28:40] 2025-11-20 02:28:40,150 [wrapper] pandaids: 6890933243
[2025-11-19 21:28:40] 2025-11-20 02:28:40,210 [wrapper] cleanup supervisor_pilot  845532 1145909
[2025-11-19 21:28:40] 2025-11-20 02:28:40,214 [wrapper] Test setup, not cleaning
[2025-11-19 21:28:40] 2025-11-20 02:28:40,219 [wrapper] apfmon messages muted
[2025-11-19 21:28:40] 2025-11-20 02:28:40,222 [wrapper] ==== wrapper stdout END ====
[2025-11-19 21:28:40] 2025-11-20 02:28:40,224 [wrapper] ==== wrapper stderr END ====
[2025-11-19 21:28:40]  *** Error codes and diagnostics ***
[2025-11-19 21:28:40]     "exeErrorCode": 0,
[2025-11-19 21:28:40]     "exeErrorDiag": "",
[2025-11-19 21:28:40]     "pilotErrorCode": 0,
[2025-11-19 21:28:40]     "pilotErrorDiag": "",
[2025-11-19 21:28:40]  *** Listing of results directory ***
[2025-11-19 21:28:40] total 1356220
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 17 21:22 pilot3.tar.gz
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 17 21:56 queuedata.json
[2025-11-19 21:28:40] -rwx------. 1 boincer umatlas     36292 Nov 17 21:58 runpilot2-wrapper.sh
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas       100 Nov 17 22:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 21:28:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 17 22:00 run_atlas
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas       105 Nov 17 22:00 job.xml
[2025-11-19 21:28:40] -rw-r--r--. 2 boincer umatlas 411509342 Nov 17 22:00 EVNT.47483658._000056.pool.root.1
[2025-11-19 21:28:40] -rw-r--r--. 2 boincer umatlas     15120 Nov 17 22:00 start_atlas.sh
[2025-11-19 21:28:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 17 22:00 shared
[2025-11-19 21:28:40] -rw-r--r--. 2 boincer umatlas    590103 Nov 17 22:00 input.tar.gz
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas         0 Nov 17 22:00 boinc_lockfile
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas      2771 Nov 17 22:00 pandaJob.out
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas    993193 Nov 17 22:01 agis_schedconf.cvmfs.json
[2025-11-19 21:28:40] drwx------. 5 boincer umatlas      4096 Nov 17 22:01 pilot3
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas       533 Nov 19 20:43 boinc_task_state.xml
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas      6660 Nov 19 21:20 init_data.xml
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas 925578397 Nov 19 21:27 HITS.47483661._000240.pool.root.1
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas        95 Nov 19 21:27 pilot_heartbeat.json
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas      1073 Nov 19 21:27 memory_monitor_summary.json
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas   1525063 Nov 19 21:27 agis_ddmendpoints.agis.ALL.json
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas   3330598 Nov 19 21:27 log.47483661._000240.job.log.tgz.1
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas      8648 Nov 19 21:27 heartbeat.json
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 19 21:28 boinc_mmap_file
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas        29 Nov 19 21:28 wrapper_checkpoint.txt
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas      4823 Nov 19 21:28 pilotlog.txt
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas  20544869 Nov 19 21:28 log.47483661._000240.job.log.1
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas       353 Nov 19 21:28 output.list
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas       620 Nov 19 21:28 runtime_log
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas  23900160 Nov 19 21:28 result.tar.gz
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas       668 Nov 19 21:28 YmLKDmY6Qf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm52JODmOcdBHo.diag
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas      8700 Nov 19 21:28 runtime_log.err
[2025-11-19 21:28:40] -rw-r--r--. 1 boincer umatlas     21767 Nov 19 21:28 stderr.txt
[2025-11-19 21:28:40] HITS file was successfully produced:
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas 925578397 Nov 19 21:27 shared/HITS.pool.root.1
[2025-11-19 21:28:40]  *** Contents of shared directory: ***
[2025-11-19 21:28:40] total 1329696
[2025-11-19 21:28:40] -rw-r--r--. 2 boincer umatlas 411509342 Nov 17 22:00 ATLAS.root_0
[2025-11-19 21:28:40] -rw-r--r--. 2 boincer umatlas     15120 Nov 17 22:00 start_atlas.sh
[2025-11-19 21:28:40] -rw-r--r--. 2 boincer umatlas    590103 Nov 17 22:00 input.tar.gz
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas 925578397 Nov 19 21:27 HITS.pool.root.1
[2025-11-19 21:28:40] -rw-------. 1 boincer umatlas  23900160 Nov 19 21:28 result.tar.gz
21:28:41 (1140696): run_atlas exited; CPU time 324282.577927
21:28:41 (1140696): called boinc_finish(0)

</stderr_txt>
]]>

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