Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:04:40 (867946): wrapper (7.7.26015): starting
05:04:40 (867946): wrapper: running run_atlas (--nthreads 4)
[2025-11-15 05:04:40] Arguments: --nthreads 4
[2025-11-15 05:04:40] Threads: 4
[2025-11-15 05:04:40] Checking for CVMFS
[2025-11-15 05:04:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-15 05:04:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-15 05:04:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-15 05:04:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-15 05:04:40] 2.9.2.0 611445 783 69180 152879 1 68 19864837 36864001 0 130560 0 385392 98.809 352169 34597 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-15 05:04:40] CVMFS is ok
[2025-11-15 05:04:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-15 05:04:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-15 05:04:40] Further information can be found at the LHC@home message board.
[2025-11-15 05:04:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-15 05:04:40] Checking for apptainer binary...
[2025-11-15 05:04:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-15 05:04:40] Running /usr/bin/apptainer --version
[2025-11-15 05:04:40] apptainer version 1.4.1-1.1
[2025-11-15 05:04:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-15 05:04:40] atlasA237
[2025-11-15 05:04:40] apptainer works
[2025-11-15 05:04:40] Set ATHENA_PROC_NUMBER=4
[2025-11-15 05:04:40] Set ATHENA_CORE_NUMBER=4
[2025-11-15 05:04:40] Starting ATLAS job with PandaID=6886205529
[2025-11-15 05:04:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-15 09:23:21]  *** The last 200 lines of the pilot log: ***
[2025-11-15 09:23:21] 2025-11-15 08:22:50,894 | INFO     | current server update state: UPDATING_FINAL
[2025-11-15 09:23:21] 2025-11-15 08:22:50,894 | INFO     | update_server=False
[2025-11-15 09:23:21] 2025-11-15 08:22:50,894 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-15 09:23:21] 2025-11-15 08:22:50,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-15 09:23:21] 2025-11-15 08:22:50,894 | INFO     | aborting loop
[2025-11-15 09:23:21] 2025-11-15 08:22:50,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-15 09:23:21] 2025-11-15 08:22:51,235 | INFO     | all job control threads have been joined
[2025-11-15 09:23:21] 2025-11-15 08:22:51,364 | INFO     | all payload control threads have been joined
[2025-11-15 09:23:21] 2025-11-15 08:22:51,488 | INFO     | all data control threads have been joined
[2025-11-15 09:23:21] 2025-11-15 08:22:51,896 | INFO     | [job] retrieve thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:51,899 | INFO     | [job] job monitor thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:51,900 | INFO     | [job] queue monitor thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:52,185 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-15 09:23:21] 2025-11-15 08:22:52,241 | INFO     | [job] control thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:52,273 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:52,370 | INFO     | [payload] control thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:52,493 | INFO     | [data] control thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:52,585 | INFO     | [job] validate thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:52,682 | INFO     | [payload] failed_post thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:52,860 | INFO     | [job] create_data_payload thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:53,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-15 09:23:21] 2025-11-15 08:22:53,155 | INFO     | [payload] validate_post thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:53,208 | INFO     | [payload] validate_pre thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:53,251 | INFO     | [data] copytool_in thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:53,274 | INFO     | [payload] execute_payloads thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:54,188 | INFO     | [data] copytool_out thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:22:57,133 | INFO     | [data] queue_monitor thread has finished
[2025-11-15 09:23:21] 2025-11-15 08:23:09,951 | INFO     | [monitor] cgroup control has ended
[2025-11-15 09:23:21] 2025-11-15 08:23:11,642 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139902710855488)>', '<ExcThread(monitor, started 139901706168064)>']
[2025-11-15 09:23:21] 2025-11-15 08:23:16,644 | INFO     | all workflow threads have been joined
[2025-11-15 09:23:21] 2025-11-15 08:23:16,644 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-15 09:23:21] 2025-11-15 08:23:16,645 | INFO     | traces error code: 0
[2025-11-15 09:23:21] 2025-11-15 08:23:16,645 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-15 09:23:21] 2025-11-15 08:23:21,427 | INFO     | PID=871757 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-15 09:23:21] 2025-11-15 08:23:21,427 | INFO     | found 0 job(s) in 20 queues
[2025-11-15 09:23:21] 2025-11-15 08:23:21,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-15 09:23:21] 2025-11-15 08:23:21,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-15 09:23:21] 2025-11-15 08:23:21,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-15 09:23:21] 2025-11-15 08:23:21,428 | INFO     | [monitor] control thread has ended
[2025-11-15 09:23:21] 2025-11-15 08:23:21,496 [wrapper] ==== pilot stdout END ====
[2025-11-15 09:23:21] 2025-11-15 08:23:21,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-15 09:23:21] 2025-11-15 08:23:21,504 [wrapper] pilotpid: 871757
[2025-11-15 09:23:21] 2025-11-15 08:23:21,508 [wrapper] Pilot exit status: 0
[2025-11-15 09:23:21] 2025-11-15 08:23:21,518 [wrapper] pandaids: 6886205529
[2025-11-15 09:23:21] 2025-11-15 08:23:21,546 [wrapper] cleanup supervisor_pilot  936647 871758
[2025-11-15 09:23:21] 2025-11-15 08:23:21,550 [wrapper] Test setup, not cleaning
[2025-11-15 09:23:21] 2025-11-15 08:23:21,554 [wrapper] apfmon messages muted
[2025-11-15 09:23:21] 2025-11-15 08:23:21,558 [wrapper] ==== wrapper stdout END ====
[2025-11-15 09:23:21] 2025-11-15 08:23:21,561 [wrapper] ==== wrapper stderr END ====
[2025-11-15 09:23:21]  *** Error codes and diagnostics ***
[2025-11-15 09:23:21]     "exeErrorCode": 0,
[2025-11-15 09:23:21]     "exeErrorDiag": "",
[2025-11-15 09:23:21]     "pilotErrorCode": 0,
[2025-11-15 09:23:21]     "pilotErrorDiag": "",
[2025-11-15 09:23:21]  *** Listing of results directory ***
[2025-11-15 09:23:21] total 928156
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc    576529 Nov 14 15:59 pilot3.tar.gz
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc      5112 Nov 14 16:00 queuedata.json
[2025-11-15 09:23:21] -rwx------ 1 boinc boinc     36292 Nov 14 16:02 runpilot2-wrapper.sh
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc       100 Nov 15 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-15 09:23:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 15 05:04 run_atlas
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc       105 Nov 15 05:04 job.xml
[2025-11-15 09:23:21] -rw-r--r-- 2 boinc boinc 380929380 Nov 15 05:04 EVNT.14545720._000239.pool.root.1
[2025-11-15 09:23:21] -rw-r--r-- 2 boinc boinc    590124 Nov 15 05:04 input.tar.gz
[2025-11-15 09:23:21] -rw-r--r-- 2 boinc boinc     15120 Nov 15 05:04 start_atlas.sh
[2025-11-15 09:23:21] drwxrwx--x 2 boinc boinc      4096 Nov 15 05:04 shared
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc         0 Nov 15 05:04 boinc_setup_complete
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc      6370 Nov 15 05:04 init_data.xml
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc         0 Nov 15 05:04 boinc_lockfile
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc      2930 Nov 15 05:04 pandaJob.out
[2025-11-15 09:23:21] -rw------- 1 boinc boinc    988594 Nov 15 05:04 agis_schedconf.cvmfs.json
[2025-11-15 09:23:21] drwx------ 5 boinc boinc      4096 Nov 15 05:04 pilot3
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc       531 Nov 15 09:18 boinc_task_state.xml
[2025-11-15 09:23:21] -rw------- 1 boinc boinc 558756650 Nov 15 09:22 HITS.47450870._002208.pool.root.1
[2025-11-15 09:23:21] -rw------- 1 boinc boinc      1029 Nov 15 09:22 memory_monitor_summary.json
[2025-11-15 09:23:21] -rw------- 1 boinc boinc   1526297 Nov 15 09:22 agis_ddmendpoints.agis.ALL.json
[2025-11-15 09:23:21] -rw------- 1 boinc boinc   1204840 Nov 15 09:22 log.47450870._002208.job.log.tgz.1
[2025-11-15 09:23:21] -rw------- 1 boinc boinc        95 Nov 15 09:22 pilot_heartbeat.json
[2025-11-15 09:23:21] -rw------- 1 boinc boinc     27945 Nov 15 09:22 heartbeat.json
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc      8192 Nov 15 09:22 boinc_mmap_file
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc        28 Nov 15 09:22 wrapper_checkpoint.txt
[2025-11-15 09:23:21] -rw------- 1 boinc boinc       746 Nov 15 09:23 pilotlog.txt
[2025-11-15 09:23:21] -rw------- 1 boinc boinc   2199121 Nov 15 09:23 log.47450870._002208.job.log.1
[2025-11-15 09:23:21] -rw------- 1 boinc boinc       353 Nov 15 09:23 output.list
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc       620 Nov 15 09:23 runtime_log
[2025-11-15 09:23:21] -rw------- 1 boinc boinc   3440640 Nov 15 09:23 result.tar.gz
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc      8793 Nov 15 09:23 runtime_log.err
[2025-11-15 09:23:21] -rw------- 1 boinc boinc       668 Nov 15 09:23 ldCNDmcUAe8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuvJODmJIdamm.diag
[2025-11-15 09:23:21] -rw-r--r-- 1 boinc boinc      7515 Nov 15 09:23 stderr.txt
[2025-11-15 09:23:21] HITS file was successfully produced:
[2025-11-15 09:23:21] -rw------- 1 boinc boinc 558756650 Nov 15 09:22 shared/HITS.pool.root.1
[2025-11-15 09:23:21]  *** Contents of shared directory: ***
[2025-11-15 09:23:21] total 921632
[2025-11-15 09:23:21] -rw-r--r-- 2 boinc boinc 380929380 Nov 15 05:04 ATLAS.root_0
[2025-11-15 09:23:21] -rw-r--r-- 2 boinc boinc    590124 Nov 15 05:04 input.tar.gz
[2025-11-15 09:23:21] -rw-r--r-- 2 boinc boinc     15120 Nov 15 05:04 start_atlas.sh
[2025-11-15 09:23:21] -rw------- 1 boinc boinc 558756650 Nov 15 09:22 HITS.pool.root.1
[2025-11-15 09:23:21] -rw------- 1 boinc boinc   3440640 Nov 15 09:23 result.tar.gz
09:23:22 (867946): run_atlas exited; CPU time 59768.611133
09:23:22 (867946): called boinc_finish(0)

</stderr_txt>
]]>

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