Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:46:41 (795174): wrapper (7.7.26015): starting
00:46:41 (795174): wrapper: running run_atlas (--nthreads 4)
[2025-11-15 00:46:41] Arguments: --nthreads 4
[2025-11-15 00:46:41] Threads: 4
[2025-11-15 00:46:41] Checking for CVMFS
[2025-11-15 00:46:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-15 00:46:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-15 00:46:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-15 00:46:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-15 00:46:41] 2.9.2.0 611445 525 65172 152874 3 68 19846249 36864001 0 130560 0 257141 98.243 345443 41007 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-15 00:46:41] CVMFS is ok
[2025-11-15 00:46:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-15 00:46:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-15 00:46:41] Further information can be found at the LHC@home message board.
[2025-11-15 00:46:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-15 00:46:41] Checking for apptainer binary...
[2025-11-15 00:46:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-15 00:46:41] Running /usr/bin/apptainer --version
[2025-11-15 00:46:41] apptainer version 1.4.1-1.1
[2025-11-15 00:46:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-15 00:46:41] atlasA237
[2025-11-15 00:46:41] apptainer works
[2025-11-15 00:46:41] Set ATHENA_PROC_NUMBER=4
[2025-11-15 00:46:41] Set ATHENA_CORE_NUMBER=4
[2025-11-15 00:46:41] Starting ATLAS job with PandaID=6886198211
[2025-11-15 00:46:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-15 05:04:16]  *** The last 200 lines of the pilot log: ***
[2025-11-15 05:04:16] 2025-11-15 04:03:11,123 | INFO     | 
[2025-11-15 05:04:16] 2025-11-15 04:03:11,123 | INFO     | architecture information:
[2025-11-15 05:04:16] 2025-11-15 04:03:11,123 | INFO     | executing command: cat /etc/os-release
[2025-11-15 05:04:16] 2025-11-15 04:03:11,137 | INFO     | cat /etc/os-release:
[2025-11-15 05:04:16] NAME="CentOS Linux"
[2025-11-15 05:04:16] VERSION="7 (Core)"
[2025-11-15 05:04:16] ID="centos"
[2025-11-15 05:04:16] ID_LIKE="rhel fedora"
[2025-11-15 05:04:16] VERSION_ID="7"
[2025-11-15 05:04:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-15 05:04:16] ANSI_COLOR="0;31"
[2025-11-15 05:04:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-15 05:04:16] HOME_URL="https://www.centos.org/"
[2025-11-15 05:04:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-15 05:04:16] 
[2025-11-15 05:04:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-15 05:04:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-15 05:04:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-15 05:04:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-15 05:04:16] 
[2025-11-15 05:04:16] 2025-11-15 04:03:11,137 | INFO     | ***************************************
[2025-11-15 05:04:16] 2025-11-15 04:03:11,641 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-15 05:04:16] 2025-11-15 04:03:11,657 | INFO     | sufficient remaining disk space (340911980544 B)
[2025-11-15 05:04:16] 2025-11-15 04:03:11,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-15 05:04:16] 2025-11-15 04:03:11,658 | INFO     | current server update state: UPDATING_FINAL
[2025-11-15 05:04:16] 2025-11-15 04:03:11,658 | INFO     | update_server=False
[2025-11-15 05:04:16] 2025-11-15 04:03:11,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-15 05:04:16] 2025-11-15 04:03:11,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-15 05:04:16] 2025-11-15 04:03:11,811 | INFO     | all data control threads have been joined
[2025-11-15 05:04:16] 2025-11-15 04:03:12,103 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-15 05:04:16] 2025-11-15 04:03:12,104 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-15 05:04:16] 2025-11-15 04:03:12,104 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-15 05:04:16] 2025-11-15 04:03:12,104 | INFO     | will abort loop
[2025-11-15 05:04:16] 2025-11-15 04:03:12,663 | INFO     | [job] retrieve thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:12,663 | INFO     | [job] queue monitor thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:12,787 | INFO     | all job control threads have been joined
[2025-11-15 05:04:16] 2025-11-15 04:03:12,817 | INFO     | [data] control thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:12,919 | INFO     | all payload control threads have been joined
[2025-11-15 05:04:16] 2025-11-15 04:03:13,010 | INFO     | [job] validate thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:13,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-15 05:04:16] 2025-11-15 04:03:13,104 | INFO     | [job] job monitor thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:13,145 | INFO     | [job] create_data_payload thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:13,195 | INFO     | [payload] validate_pre thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:13,238 | INFO     | [payload] execute_payloads thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:13,650 | INFO     | [data] copytool_in thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:13,793 | INFO     | [job] control thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:13,924 | INFO     | [payload] control thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:14,086 | INFO     | [payload] validate_post thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:14,093 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:14,239 | INFO     | [payload] failed_post thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:15,040 | INFO     | [data] copytool_out thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:15,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-15 05:04:16] 2025-11-15 04:03:19,047 | INFO     | [data] queue_monitor thread has finished
[2025-11-15 05:04:16] 2025-11-15 04:03:42,775 | INFO     | PID=798974 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-15 05:04:16] 2025-11-15 04:03:42,775 | INFO     | found 0 job(s) in 20 queues
[2025-11-15 05:04:16] 2025-11-15 04:03:42,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-15 05:04:16] 2025-11-15 04:03:42,775 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-15 05:04:16] 2025-11-15 04:04:10,464 | INFO     | [monitor] cgroup control has ended
[2025-11-15 05:04:16] 2025-11-15 04:04:11,516 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140249153640256)>', '<ExcThread(monitor, started 140248507991808)>']
[2025-11-15 05:04:16] 2025-11-15 04:04:11,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-15 05:04:16] 2025-11-15 04:04:11,923 | INFO     | [monitor] control thread has ended
[2025-11-15 05:04:16] 2025-11-15 04:04:16,520 | INFO     | all workflow threads have been joined
[2025-11-15 05:04:16] 2025-11-15 04:04:16,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-15 05:04:16] 2025-11-15 04:04:16,520 | INFO     | traces error code: 0
[2025-11-15 05:04:16] 2025-11-15 04:04:16,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-15 05:04:16] 2025-11-15 04:04:16,592 [wrapper] ==== pilot stdout END ====
[2025-11-15 05:04:16] 2025-11-15 04:04:16,595 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-15 05:04:16] 2025-11-15 04:04:16,599 [wrapper] pilotpid: 798974
[2025-11-15 05:04:16] 2025-11-15 04:04:16,603 [wrapper] Pilot exit status: 0
[2025-11-15 05:04:16] 2025-11-15 04:04:16,613 [wrapper] pandaids: 6886198211
[2025-11-15 05:04:16] 2025-11-15 04:04:16,643 [wrapper] cleanup supervisor_pilot  865299 798975
[2025-11-15 05:04:16] 2025-11-15 04:04:16,647 [wrapper] Test setup, not cleaning
[2025-11-15 05:04:16] 2025-11-15 04:04:16,650 [wrapper] apfmon messages muted
[2025-11-15 05:04:16] 2025-11-15 04:04:16,654 [wrapper] ==== wrapper stdout END ====
[2025-11-15 05:04:16] 2025-11-15 04:04:16,658 [wrapper] ==== wrapper stderr END ====
[2025-11-15 05:04:16]  *** Error codes and diagnostics ***
[2025-11-15 05:04:16]     "exeErrorCode": 0,
[2025-11-15 05:04:16]     "exeErrorDiag": "",
[2025-11-15 05:04:16]     "pilotErrorCode": 0,
[2025-11-15 05:04:16]     "pilotErrorDiag": "",
[2025-11-15 05:04:16]  *** Listing of results directory ***
[2025-11-15 05:04:16] total 911296
[2025-11-15 05:04:16] -rwx------ 1 boinc boinc     36292 Nov 14 15:59 runpilot2-wrapper.sh
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc    576529 Nov 14 15:59 pilot3.tar.gz
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc      5112 Nov 14 16:00 queuedata.json
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc       100 Nov 15 00:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-15 05:04:16] -rwxr-xr-x 1 boinc boinc      7986 Nov 15 00:46 run_atlas
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc       105 Nov 15 00:46 job.xml
[2025-11-15 05:04:16] -rw-r--r-- 2 boinc boinc 377243788 Nov 15 00:46 EVNT.14545720._000177.pool.root.1
[2025-11-15 05:04:16] -rw-r--r-- 2 boinc boinc    590125 Nov 15 00:46 input.tar.gz
[2025-11-15 05:04:16] -rw-r--r-- 2 boinc boinc     15120 Nov 15 00:46 start_atlas.sh
[2025-11-15 05:04:16] drwxrwx--x 2 boinc boinc      4096 Nov 15 00:46 shared
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc         0 Nov 15 00:46 boinc_setup_complete
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc      6369 Nov 15 00:46 init_data.xml
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc         0 Nov 15 00:46 boinc_lockfile
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc      2930 Nov 15 00:46 pandaJob.out
[2025-11-15 05:04:16] -rw------- 1 boinc boinc    988676 Nov 15 00:46 agis_schedconf.cvmfs.json
[2025-11-15 05:04:16] drwx------ 5 boinc boinc      4096 Nov 15 00:46 pilot3
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc       531 Nov 15 04:59 boinc_task_state.xml
[2025-11-15 05:04:16] -rw------- 1 boinc boinc 545207260 Nov 15 05:02 HITS.47450870._001590.pool.root.1
[2025-11-15 05:04:16] -rw------- 1 boinc boinc      1028 Nov 15 05:02 memory_monitor_summary.json
[2025-11-15 05:04:16] -rw------- 1 boinc boinc   1526297 Nov 15 05:03 agis_ddmendpoints.agis.ALL.json
[2025-11-15 05:04:16] -rw------- 1 boinc boinc   1204630 Nov 15 05:03 log.47450870._001590.job.log.tgz.1
[2025-11-15 05:04:16] -rw------- 1 boinc boinc     28276 Nov 15 05:03 heartbeat.json
[2025-11-15 05:04:16] -rw------- 1 boinc boinc        95 Nov 15 05:03 pilot_heartbeat.json
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc      8192 Nov 15 05:04 boinc_mmap_file
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc        28 Nov 15 05:04 wrapper_checkpoint.txt
[2025-11-15 05:04:16] -rw------- 1 boinc boinc      4937 Nov 15 05:04 pilotlog.txt
[2025-11-15 05:04:16] -rw------- 1 boinc boinc   2180392 Nov 15 05:04 log.47450870._001590.job.log.1
[2025-11-15 05:04:16] -rw------- 1 boinc boinc       353 Nov 15 05:04 output.list
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc       620 Nov 15 05:04 runtime_log
[2025-11-15 05:04:16] -rw------- 1 boinc boinc   3420160 Nov 15 05:04 result.tar.gz
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc      8793 Nov 15 05:04 runtime_log.err
[2025-11-15 05:04:16] -rw------- 1 boinc boinc       668 Nov 15 05:04 chDMDmgRAe8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuqJODmdGQiZn.diag
[2025-11-15 05:04:16] -rw-r--r-- 1 boinc boinc      9257 Nov 15 05:04 stderr.txt
[2025-11-15 05:04:16] HITS file was successfully produced:
[2025-11-15 05:04:16] -rw------- 1 boinc boinc 545207260 Nov 15 05:02 shared/HITS.pool.root.1
[2025-11-15 05:04:16]  *** Contents of shared directory: ***
[2025-11-15 05:04:16] total 904780
[2025-11-15 05:04:16] -rw-r--r-- 2 boinc boinc 377243788 Nov 15 00:46 ATLAS.root_0
[2025-11-15 05:04:16] -rw-r--r-- 2 boinc boinc    590125 Nov 15 00:46 input.tar.gz
[2025-11-15 05:04:16] -rw-r--r-- 2 boinc boinc     15120 Nov 15 00:46 start_atlas.sh
[2025-11-15 05:04:16] -rw------- 1 boinc boinc 545207260 Nov 15 05:02 HITS.pool.root.1
[2025-11-15 05:04:16] -rw------- 1 boinc boinc   3420160 Nov 15 05:04 result.tar.gz
05:04:17 (795174): run_atlas exited; CPU time 59432.753712
05:04:17 (795174): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN