Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:26:39 (721648): wrapper (7.7.26015): starting
20:26:39 (721648): wrapper: running run_atlas (--nthreads 4)
[2025-11-14 20:26:39] Arguments: --nthreads 4
[2025-11-14 20:26:39] Threads: 4
[2025-11-14 20:26:39] Checking for CVMFS
[2025-11-14 20:26:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-14 20:26:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-14 20:26:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-14 20:26:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-14 20:26:39] 2.9.2.0 611445 265 56948 152867 2 68 19814876 36864001 0 130560 0 128750 96.584 337171 43332 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-14 20:26:39] CVMFS is ok
[2025-11-14 20:26:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-14 20:26:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-14 20:26:39] Further information can be found at the LHC@home message board.
[2025-11-14 20:26:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-14 20:26:39] Checking for apptainer binary...
[2025-11-14 20:26:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-14 20:26:39] Running /usr/bin/apptainer --version
[2025-11-14 20:26:39] apptainer version 1.4.1-1.1
[2025-11-14 20:26:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-14 20:26:39] atlasA237
[2025-11-14 20:26:39] apptainer works
[2025-11-14 20:26:39] Set ATHENA_PROC_NUMBER=4
[2025-11-14 20:26:39] Set ATHENA_CORE_NUMBER=4
[2025-11-14 20:26:39] Starting ATLAS job with PandaID=6886197889
[2025-11-14 20:26:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-15 00:46:36]  *** The last 200 lines of the pilot log: ***
[2025-11-15 00:46:36] 2025-11-14 23:46:05,385 | INFO     | --- collectZombieJob: --- 10, [732746]
[2025-11-15 00:46:36] 2025-11-14 23:46:05,385 | INFO     | zombie collector waiting for pid 732746
[2025-11-15 00:46:36] 2025-11-14 23:46:05,386 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-15 00:46:36] 2025-11-14 23:46:05,386 | INFO     | collected zombie processes
[2025-11-15 00:46:36] 2025-11-14 23:46:05,386 | INFO     | will attempt to kill all subprocesses of pid=732746
[2025-11-15 00:46:36] 2025-11-14 23:46:05,460 | INFO     | process IDs to be killed: [732746] (in reverse order)
[2025-11-15 00:46:36] 2025-11-14 23:46:05,505 | WARNING  | found no corresponding commands to process id(s)
[2025-11-15 00:46:36] 2025-11-14 23:46:05,505 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-15 00:46:36] 2025-11-14 23:46:05,508 | INFO     | did not find any defunct processes belonging to 732746
[2025-11-15 00:46:36] 2025-11-14 23:46:05,511 | INFO     | did not find any defunct processes belonging to 732746
[2025-11-15 00:46:36] 2025-11-14 23:46:05,512 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-15 00:46:36] 2025-11-14 23:46:05,512 | INFO     | ready for new job
[2025-11-15 00:46:36] 2025-11-14 23:46:05,512 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-15 00:46:36] 2025-11-14 23:46:05,513 | INFO     | ***************************************
[2025-11-15 00:46:36] 2025-11-14 23:46:05,513 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-15 00:46:36] 2025-11-14 23:46:05,513 | INFO     | ***************************************
[2025-11-15 00:46:36] 2025-11-14 23:46:05,513 | INFO     | 
[2025-11-15 00:46:36] 2025-11-14 23:46:05,513 | INFO     | architecture information:
[2025-11-15 00:46:36] 2025-11-14 23:46:05,514 | INFO     | executing command: cat /etc/os-release
[2025-11-15 00:46:36] 2025-11-14 23:46:05,528 | INFO     | cat /etc/os-release:
[2025-11-15 00:46:36] NAME="CentOS Linux"
[2025-11-15 00:46:36] VERSION="7 (Core)"
[2025-11-15 00:46:36] ID="centos"
[2025-11-15 00:46:36] ID_LIKE="rhel fedora"
[2025-11-15 00:46:36] VERSION_ID="7"
[2025-11-15 00:46:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-15 00:46:36] ANSI_COLOR="0;31"
[2025-11-15 00:46:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-15 00:46:36] HOME_URL="https://www.centos.org/"
[2025-11-15 00:46:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-15 00:46:36] 
[2025-11-15 00:46:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-15 00:46:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-15 00:46:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-15 00:46:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-15 00:46:36] 
[2025-11-15 00:46:36] 2025-11-14 23:46:05,528 | INFO     | ***************************************
[2025-11-15 00:46:36] 2025-11-14 23:46:06,031 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-15 00:46:36] 2025-11-14 23:46:06,046 | INFO     | sufficient remaining disk space (340529250304 B)
[2025-11-15 00:46:36] 2025-11-14 23:46:06,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-15 00:46:36] 2025-11-14 23:46:06,046 | INFO     | current server update state: UPDATING_FINAL
[2025-11-15 00:46:36] 2025-11-14 23:46:06,046 | INFO     | update_server=False
[2025-11-15 00:46:36] 2025-11-14 23:46:06,047 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-15 00:46:36] 2025-11-14 23:46:06,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-15 00:46:36] 2025-11-14 23:46:06,047 | INFO     | aborting loop
[2025-11-15 00:46:36] 2025-11-14 23:46:06,311 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-15 00:46:36] 2025-11-14 23:46:06,652 | INFO     | all data control threads have been joined
[2025-11-15 00:46:36] 2025-11-14 23:46:06,991 | INFO     | all job control threads have been joined
[2025-11-15 00:46:36] 2025-11-14 23:46:07,052 | INFO     | [job] retrieve thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:07,052 | INFO     | [job] job monitor thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:07,105 | INFO     | [job] validate thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:07,115 | INFO     | [job] create_data_payload thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:07,125 | INFO     | [payload] validate_pre thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:07,183 | INFO     | all payload control threads have been joined
[2025-11-15 00:46:36] 2025-11-14 23:46:07,520 | INFO     | [data] copytool_in thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:07,641 | INFO     | [payload] execute_payloads thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:07,658 | INFO     | [data] control thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:07,992 | INFO     | [job] control thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:08,187 | INFO     | [payload] control thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:08,317 | INFO     | [data] copytool_out thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:08,376 | INFO     | [monitor] cgroup control has ended
[2025-11-15 00:46:36] 2025-11-14 23:46:08,478 | INFO     | [payload] validate_post thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:08,536 | INFO     | [payload] failed_post thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:08,642 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-15 00:46:36] 2025-11-14 23:46:08,910 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-15 00:46:36] 2025-11-14 23:46:09,916 | INFO     | [job] queue monitor thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:12,650 | INFO     | [data] queue_monitor thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:16,406 | INFO     | job.realtimelogging is not enabled
[2025-11-15 00:46:36] 2025-11-14 23:46:17,411 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-15 00:46:36] 2025-11-14 23:46:19,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139960878192448)>', '<ExcThread(monitor, started 139959914698496)>']
[2025-11-15 00:46:36] 2025-11-14 23:46:24,027 | INFO     | all workflow threads have been joined
[2025-11-15 00:46:36] 2025-11-14 23:46:24,027 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-15 00:46:36] 2025-11-14 23:46:24,027 | INFO     | traces error code: 0
[2025-11-15 00:46:36] 2025-11-14 23:46:24,027 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-15 00:46:36] 2025-11-14 23:46:35,924 | INFO     | PID=725453 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-15 00:46:36] 2025-11-14 23:46:35,924 | INFO     | found 0 job(s) in 20 queues
[2025-11-15 00:46:36] 2025-11-14 23:46:35,924 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-15 00:46:36] 2025-11-14 23:46:35,924 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-15 00:46:36] 2025-11-14 23:46:35,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-15 00:46:36] 2025-11-14 23:46:35,924 | INFO     | [monitor] control thread has ended
[2025-11-15 00:46:36] 2025-11-14 23:46:35,993 [wrapper] ==== pilot stdout END ====
[2025-11-15 00:46:36] 2025-11-14 23:46:35,997 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-15 00:46:36] 2025-11-14 23:46:36,001 [wrapper] pilotpid: 725453
[2025-11-15 00:46:36] 2025-11-14 23:46:36,005 [wrapper] Pilot exit status: 0
[2025-11-15 00:46:36] 2025-11-14 23:46:36,016 [wrapper] pandaids: 6886197889
[2025-11-15 00:46:36] 2025-11-14 23:46:36,045 [wrapper] cleanup supervisor_pilot  792109 725454
[2025-11-15 00:46:36] 2025-11-14 23:46:36,048 [wrapper] Test setup, not cleaning
[2025-11-15 00:46:36] 2025-11-14 23:46:36,053 [wrapper] apfmon messages muted
[2025-11-15 00:46:36] 2025-11-14 23:46:36,056 [wrapper] ==== wrapper stdout END ====
[2025-11-15 00:46:36] 2025-11-14 23:46:36,059 [wrapper] ==== wrapper stderr END ====
[2025-11-15 00:46:36]  *** Error codes and diagnostics ***
[2025-11-15 00:46:36]     "exeErrorCode": 0,
[2025-11-15 00:46:36]     "exeErrorDiag": "",
[2025-11-15 00:46:36]     "pilotErrorCode": 0,
[2025-11-15 00:46:36]     "pilotErrorDiag": "",
[2025-11-15 00:46:36]  *** Listing of results directory ***
[2025-11-15 00:46:36] total 929292
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc    576529 Nov 14 15:24 pilot3.tar.gz
[2025-11-15 00:46:36] -rwx------ 1 boinc boinc     36292 Nov 14 15:58 runpilot2-wrapper.sh
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc      5112 Nov 14 15:58 queuedata.json
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc       100 Nov 14 20:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-15 00:46:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 14 20:26 run_atlas
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc       105 Nov 14 20:26 job.xml
[2025-11-15 00:46:36] -rw-r--r-- 2 boinc boinc 383417568 Nov 14 20:26 EVNT.14545720._000168.pool.root.1
[2025-11-15 00:46:36] -rw-r--r-- 2 boinc boinc    590128 Nov 14 20:26 input.tar.gz
[2025-11-15 00:46:36] -rw-r--r-- 2 boinc boinc     15120 Nov 14 20:26 start_atlas.sh
[2025-11-15 00:46:36] drwxrwx--x 2 boinc boinc      4096 Nov 14 20:26 shared
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc         0 Nov 14 20:26 boinc_setup_complete
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc      6369 Nov 14 20:26 init_data.xml
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc         0 Nov 14 20:26 boinc_lockfile
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc      2930 Nov 14 20:26 pandaJob.out
[2025-11-15 00:46:36] -rw------- 1 boinc boinc    988602 Nov 14 20:26 agis_schedconf.cvmfs.json
[2025-11-15 00:46:36] drwx------ 5 boinc boinc      4096 Nov 14 20:26 pilot3
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc       532 Nov 15 00:42 boinc_task_state.xml
[2025-11-15 00:46:36] -rw------- 1 boinc boinc        95 Nov 15 00:45 pilot_heartbeat.json
[2025-11-15 00:46:36] -rw------- 1 boinc boinc 557415456 Nov 15 00:45 HITS.47450870._001494.pool.root.1
[2025-11-15 00:46:36] -rw------- 1 boinc boinc      1028 Nov 15 00:45 memory_monitor_summary.json
[2025-11-15 00:46:36] -rw------- 1 boinc boinc   1526297 Nov 15 00:45 agis_ddmendpoints.agis.ALL.json
[2025-11-15 00:46:36] -rw------- 1 boinc boinc   1203715 Nov 15 00:45 log.47450870._001494.job.log.tgz.1
[2025-11-15 00:46:36] -rw------- 1 boinc boinc     28051 Nov 15 00:46 heartbeat.json
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc      8192 Nov 15 00:46 boinc_mmap_file
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc        28 Nov 15 00:46 wrapper_checkpoint.txt
[2025-11-15 00:46:36] -rw------- 1 boinc boinc       746 Nov 15 00:46 pilotlog.txt
[2025-11-15 00:46:36] -rw------- 1 boinc boinc   2203830 Nov 15 00:46 log.47450870._001494.job.log.1
[2025-11-15 00:46:36] -rw------- 1 boinc boinc       353 Nov 15 00:46 output.list
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc       620 Nov 15 00:46 runtime_log
[2025-11-15 00:46:36] -rw------- 1 boinc boinc   3450880 Nov 15 00:46 result.tar.gz
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc      8793 Nov 15 00:46 runtime_log.err
[2025-11-15 00:46:36] -rw------- 1 boinc boinc       668 Nov 15 00:46 olHLDmiQAe8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEpJODmR9gKQm.diag
[2025-11-15 00:46:36] -rw-r--r-- 1 boinc boinc     10922 Nov 15 00:46 stderr.txt
[2025-11-15 00:46:36] HITS file was successfully produced:
[2025-11-15 00:46:36] -rw------- 1 boinc boinc 557415456 Nov 15 00:45 shared/HITS.pool.root.1
[2025-11-15 00:46:36]  *** Contents of shared directory: ***
[2025-11-15 00:46:36] total 922760
[2025-11-15 00:46:36] -rw-r--r-- 2 boinc boinc 383417568 Nov 14 20:26 ATLAS.root_0
[2025-11-15 00:46:36] -rw-r--r-- 2 boinc boinc    590128 Nov 14 20:26 input.tar.gz
[2025-11-15 00:46:36] -rw-r--r-- 2 boinc boinc     15120 Nov 14 20:26 start_atlas.sh
[2025-11-15 00:46:36] -rw------- 1 boinc boinc 557415456 Nov 15 00:45 HITS.pool.root.1
[2025-11-15 00:46:36] -rw------- 1 boinc boinc   3450880 Nov 15 00:46 result.tar.gz
00:46:37 (721648): run_atlas exited; CPU time 60095.216603
00:46:37 (721648): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN