Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:25:12 (3302262): wrapper (7.7.26015): starting
17:25:12 (3302262): wrapper: running run_atlas (--nthreads 12)
[2025-11-09 17:25:12] Arguments: --nthreads 12
[2025-11-09 17:25:12] Threads: 12
[2025-11-09 17:25:12] Checking for CVMFS
[2025-11-09 17:25:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-09 17:25:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-09 17:25:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-09 17:25:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-09 17:25:12] 2.13.3.0 9060 2104 165688 152664 2 100 33828673 46080000 13031 130560 0 4203625 99.633 5966452 34236 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-09 17:25:12] CVMFS is ok
[2025-11-09 17:25:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-09 17:25:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-09 17:25:12] Further information can be found at the LHC@home message board.
[2025-11-09 17:25:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-09 17:25:12] Checking for apptainer binary...
[2025-11-09 17:25:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-09 17:25:12] Running /usr/bin/apptainer --version
[2025-11-09 17:25:12] apptainer version 1.4.3-1.el9
[2025-11-09 17:25:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-09 17:25:12] mff2104.farm.particle.cz
[2025-11-09 17:25:12] apptainer works
[2025-11-09 17:25:12] Set ATHENA_PROC_NUMBER=12
[2025-11-09 17:25:12] Set ATHENA_CORE_NUMBER=12
[2025-11-09 17:25:12] Starting ATLAS job with PandaID=6874039828
[2025-11-09 17:25:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-10 06:28:38]  *** The last 200 lines of the pilot log: ***
[2025-11-10 06:28:38] 2025-11-10 05:25:47,911 | INFO     | monitor loop #3403: job 0:6874039828 is in state 'finished'
[2025-11-10 06:28:38] 2025-11-10 05:25:47,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,264 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-10 06:28:38] 2025-11-10 05:25:49,276 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2840.5222604166665
[2025-11-10 06:28:38] 2025-11-10 05:25:49,292 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6874039828/memory_monitor_summary.json (trf name=prmon)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,292 | INFO     | extracted standard info from prmon json
[2025-11-10 06:28:38] 2025-11-10 05:25:49,292 | INFO     | extracted standard memory fields from prmon json
[2025-11-10 06:28:38] 2025-11-10 05:25:49,292 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-10 06:28:38] 2025-11-10 05:25:49,303 | INFO     | fitting pss+swap vs Time
[2025-11-10 06:28:38] 2025-11-10 05:25:49,304 | INFO     | sum of square deviations: 139914721817.81235
[2025-11-10 06:28:38] 2025-11-10 05:25:49,315 | INFO     | sum of deviations: 1833973693995.7012
[2025-11-10 06:28:38] 2025-11-10 05:25:49,316 | INFO     | mean x: 1762728920.9843547
[2025-11-10 06:28:38] 2025-11-10 05:25:49,316 | INFO     | mean y: 4421712.8917861795
[2025-11-10 06:28:38] 2025-11-10 05:25:49,316 | INFO     | intersect: -23101070180.522182
[2025-11-10 06:28:38] 2025-11-10 05:25:49,317 | INFO     | chi2: 6.449785095522218
[2025-11-10 06:28:38] 2025-11-10 05:25:49,317 | INFO     | sum of square deviations: 137196473210.43533
[2025-11-10 06:28:38] 2025-11-10 05:25:49,328 | INFO     | sum of deviations: 2193543672927.1006
[2025-11-10 06:28:38] 2025-11-10 05:25:49,328 | INFO     | mean x: 1762728768.4908137
[2025-11-10 06:28:38] 2025-11-10 05:25:49,328 | INFO     | mean y: 4441871.085301837
[2025-11-10 06:28:38] 2025-11-10 05:25:49,329 | INFO     | intersect: -28178662597.488636
[2025-11-10 06:28:38] 2025-11-10 05:25:49,329 | INFO     | chi2: 3.7026157022865855
[2025-11-10 06:28:38] 2025-11-10 05:25:49,329 | INFO     | current chi2=3.7026157022865855 (change=42.59319268083618 %)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,330 | INFO     | sum of square deviations: 134513574531.97887
[2025-11-10 06:28:38] 2025-11-10 05:25:49,341 | INFO     | sum of deviations: 2346047193998.556
[2025-11-10 06:28:38] 2025-11-10 05:25:49,341 | INFO     | mean x: 1762728615.994716
[2025-11-10 06:28:38] 2025-11-10 05:25:49,341 | INFO     | mean y: 4450526.889035667
[2025-11-10 06:28:38] 2025-11-10 05:25:49,341 | INFO     | intersect: -30739246068.224594
[2025-11-10 06:28:38] 2025-11-10 05:25:49,342 | INFO     | chi2: 3.022701348605018
[2025-11-10 06:28:38] 2025-11-10 05:25:49,342 | INFO     | current chi2=3.022701348605018 (change=18.36308189536603 %)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,342 | INFO     | right removable region: 756
[2025-11-10 06:28:38] 2025-11-10 05:25:49,343 | INFO     | sum of square deviations: 137196059204.41595
[2025-11-10 06:28:38] 2025-11-10 05:25:49,354 | INFO     | sum of deviations: 1472885079927.4766
[2025-11-10 06:28:38] 2025-11-10 05:25:49,354 | INFO     | mean x: 1762729073.4895012
[2025-11-10 06:28:38] 2025-11-10 05:25:49,354 | INFO     | mean y: 4441940.122047244
[2025-11-10 06:28:38] 2025-11-10 05:25:49,354 | INFO     | intersect: -18919551703.37397
[2025-11-10 06:28:38] 2025-11-10 05:25:49,355 | INFO     | chi2: 3.7508909748776085
[2025-11-10 06:28:38] 2025-11-10 05:25:49,355 | INFO     | current chi2=3.7508909748776085 (change=41.84471390400782 %)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,356 | INFO     | sum of square deviations: 134513025291.91573
[2025-11-10 06:28:38] 2025-11-10 05:25:49,366 | INFO     | sum of deviations: 1366130622110.0647
[2025-11-10 06:28:38] 2025-11-10 05:25:49,367 | INFO     | mean x: 1762729225.9894319
[2025-11-10 06:28:38] 2025-11-10 05:25:49,367 | INFO     | mean y: 4448006.007926024
[2025-11-10 06:28:38] 2025-11-10 05:25:49,367 | INFO     | intersect: -17898044104.971783
[2025-11-10 06:28:38] 2025-11-10 05:25:49,367 | INFO     | chi2: 3.6335524885440114
[2025-11-10 06:28:38] 2025-11-10 05:25:49,368 | INFO     | current chi2=3.6335524885440114 (change=3.1282830431355277 %)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,368 | INFO     | left removable region: 20
[2025-11-10 06:28:38] 2025-11-10 05:25:49,368 | INFO     | sum of square deviations: 123626422018.0
[2025-11-10 06:28:38] 2025-11-10 05:25:49,379 | INFO     | sum of deviations: 1760505162223.9998
[2025-11-10 06:28:38] 2025-11-10 05:25:49,379 | INFO     | mean x: 1762729195.5
[2025-11-10 06:28:38] 2025-11-10 05:25:49,379 | INFO     | mean y: 4486340.828804348
[2025-11-10 06:28:38] 2025-11-10 05:25:49,379 | INFO     | intersect: -25097702961.623615
[2025-11-10 06:28:38] 2025-11-10 05:25:49,380 | INFO     | chi2: 0.09418886291589001
[2025-11-10 06:28:38] 2025-11-10 05:25:49,380 | INFO     | current memory leak: 14.24 B/s (using 736 data points, chi2=0.09)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,381 | INFO     | could have reported an average CPU frequency of 2788 MHz (29 samples)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,381 | INFO     | ..............................
[2025-11-10 06:28:38] 2025-11-10 05:25:49,381 | INFO     | . Timing measurements:
[2025-11-10 06:28:38] 2025-11-10 05:25:49,381 | INFO     | . get job = 0 s
[2025-11-10 06:28:38] 2025-11-10 05:25:49,381 | INFO     | . initial setup = 2 s
[2025-11-10 06:28:38] 2025-11-10 05:25:49,381 | INFO     | . payload setup = 11 s
[2025-11-10 06:28:38] 2025-11-10 05:25:49,382 | INFO     | . stage-in = 0 s
[2025-11-10 06:28:38] 2025-11-10 05:25:49,382 | INFO     | . payload execution = 46783 s
[2025-11-10 06:28:38] 2025-11-10 05:25:49,382 | INFO     | . stage-out = 2 s
[2025-11-10 06:28:38] 2025-11-10 05:25:49,382 | INFO     | . log creation = 1 s
[2025-11-10 06:28:38] 2025-11-10 05:25:49,382 | INFO     | ..............................
[2025-11-10 06:28:38] 2025-11-10 05:25:49,428 | INFO     | time since job start (46824s) is within the limit (172800.0s)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,656 | INFO     | 
[2025-11-10 06:28:38] 2025-11-10 05:25:49,656 | INFO     | job summary report
[2025-11-10 06:28:38] 2025-11-10 05:25:49,656 | INFO     | --------------------------------------------------
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | PanDA job id: 6874039828
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | task id: 47264539
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | errors: (none)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | pilot state: finished 
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | transexitcode: 0
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | exeerrorcode: 0
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | exeerrordiag: 
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | exitcode: 0
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | exitmsg: OK
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | cpuconsumptiontime: 549803 s
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | nevents: 1000
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | neventsw: 0
[2025-11-10 06:28:38] 2025-11-10 05:25:49,657 | INFO     | pid: 3314550
[2025-11-10 06:28:38] 2025-11-10 05:25:49,658 | INFO     | pgrp: 3314550
[2025-11-10 06:28:38] 2025-11-10 05:25:49,658 | INFO     | corecount: 12
[2025-11-10 06:28:38] 2025-11-10 05:25:49,658 | INFO     | event service: False
[2025-11-10 06:28:38] 2025-11-10 05:25:49,658 | INFO     | sizes: {0: 2349551, 1: 2349551, 5: 2349841, 11: 2349897, 46798: 2415654, 46802: 2424654, 46804: 2424838, 46809: 2425084}
[2025-11-10 06:28:38] 2025-11-10 05:25:49,658 | INFO     | --------------------------------------------------
[2025-11-10 06:28:38] 2025-11-10 05:25:49,658 | INFO     | 
[2025-11-10 06:28:38] 2025-11-10 05:25:49,658 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-11-10 06:28:38] 2025-11-10 05:25:49,679 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,680 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,681 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,681 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,681 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,681 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,681 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-10 06:28:38] 2025-11-10 05:25:49,682 | INFO     | job 6874039828 has completed (purged errors)
[2025-11-10 06:28:38] 2025-11-10 05:25:49,683 | INFO     | overall cleanup function is called
[2025-11-10 06:28:38] 2025-11-10 05:25:50,701 | INFO     | --- collectZombieJob: --- 10, [3314550]
[2025-11-10 06:28:38] 2025-11-10 05:25:50,702 | INFO     | zombie collector waiting for pid 3314550
[2025-11-10 06:28:38] 2025-11-10 05:25:50,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-10 06:28:38] 2025-11-10 05:25:50,702 | INFO     | collected zombie processes
[2025-11-10 06:28:38] 2025-11-10 05:25:50,702 | INFO     | will attempt to kill all subprocesses of pid=3314550
[2025-11-10 06:28:38] 2025-11-10 05:25:50,952 | INFO     | process IDs to be killed: [3314550] (in reverse order)
[2025-11-10 06:28:38] 2025-11-10 05:25:51,072 | WARNING  | found no corresponding commands to process id(s)
[2025-11-10 06:28:38] 2025-11-10 05:25:51,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-10 06:28:38] 2025-11-10 05:25:51,086 | INFO     | did not find any defunct processes belonging to 3314550
[2025-11-10 06:28:38] 2025-11-10 05:25:51,100 | INFO     | did not find any defunct processes belonging to 3314550
[2025-11-10 06:28:38] 2025-11-10 05:25:51,102 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-10 06:28:38] 2025-11-10 05:25:51,102 | INFO     | ready for new job
[2025-11-10 06:28:38] 2025-11-10 05:25:51,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-10 06:28:38] 2025-11-10 05:25:51,107 | INFO     | ***************************************
[2025-11-10 06:28:38] 2025-11-10 05:25:51,107 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-10 06:28:38] 2025-11-10 05:25:51,108 | INFO     | ***************************************
[2025-11-10 06:28:38] 2025-11-10 05:25:51,108 | INFO     | 
[2025-11-10 06:28:38] 2025-11-10 05:25:51,113 | INFO     | architecture information:
[2025-11-10 06:28:38] 2025-11-10 05:25:51,114 | INFO     | executing command: cat /etc/os-release
[2025-11-10 06:28:38] 2025-11-10 05:25:51,131 | INFO     | cat /etc/os-release:
[2025-11-10 06:28:38] NAME="CentOS Linux"
[2025-11-10 06:28:38] VERSION="7 (Core)"
[2025-11-10 06:28:38] ID="centos"
[2025-11-10 06:28:38] ID_LIKE="rhel fedora"
[2025-11-10 06:28:38] VERSION_ID="7"
[2025-11-10 06:28:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-10 06:28:38] ANSI_COLOR="0;31"
[2025-11-10 06:28:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-10 06:28:38] HOME_URL="https://www.centos.org/"
[2025-11-10 06:28:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-10 06:28:38] 
[2025-11-10 06:28:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-10 06:28:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-10 06:28:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-10 06:28:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-10 06:28:38] 
[2025-11-10 06:28:38] 2025-11-10 05:25:51,131 | INFO     | ***************************************
[2025-11-10 06:28:38] 2025-11-10 05:25:51,633 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-11-10 06:28:38] 2025-11-10 05:25:51,651 | INFO     | sufficient remaining disk space (1469064413184 B)
[2025-11-10 06:28:38] 2025-11-10 05:25:51,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-10 06:28:38] 2025-11-10 05:25:51,651 | INFO     | current server update state: UPDATING_FINAL
[2025-11-10 06:28:38] 2025-11-10 05:25:51,651 | INFO     | update_server=False
[2025-11-10 06:28:38] 2025-11-10 05:25:51,651 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-10 06:28:38] 2025-11-10 05:25:51,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-10 06:28:38] 2025-11-10 05:25:51,652 | INFO     | aborting loop
[2025-11-10 06:28:38] 2025-11-10 05:25:51,917 | INFO     | all payload control threads have been joined
[2025-11-10 06:28:38] 2025-11-10 05:25:51,925 | INFO     | all data control threads have been joined
[2025-11-10 06:28:38] 2025-11-10 05:25:52,656 | INFO     | [job] retrieve thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:52,658 | INFO     | [job] job monitor thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:52,676 | INFO     | [data] copytool_in thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:52,919 | INFO     | [payload] control thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:52,931 | INFO     | [data] control thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:53,102 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-10 06:28:38] 2025-11-10 05:25:53,182 | INFO     | [payload] execute_payloads thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:53,230 | INFO     | all job control threads have been joined
[2025-11-10 06:28:38] 2025-11-10 05:25:53,248 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:53,296 | INFO     | [payload] failed_post thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:53,401 | INFO     | [job] create_data_payload thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:53,466 | INFO     | [job] validate thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:54,152 | INFO     | [payload] validate_pre thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:54,156 | INFO     | [payload] validate_post thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:54,235 | INFO     | [job] control thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:54,459 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-10 06:28:38] 2025-11-10 05:25:54,972 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-10 06:28:38] 2025-11-10 05:25:55,108 | INFO     | [data] copytool_out thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:55,464 | INFO     | [job] queue monitor thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:25:58,978 | INFO     | [data] queue_monitor thread has finished
[2025-11-10 06:28:38] 2025-11-10 05:26:22,860 | INFO     | PID=3306713 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-10 06:28:38] 2025-11-10 05:26:22,862 | INFO     | .. there are 16 such processes running
[2025-11-10 06:28:38] 2025-11-10 05:26:22,862 | INFO     | found 0 job(s) in 20 queues
[2025-11-10 06:28:38] 2025-11-10 05:26:22,862 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-10 06:28:38] 2025-11-10 05:26:22,862 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-10 06:28:38] 2025-11-10 05:26:38,314 | INFO     | [monitor] cgroup control has ended
[2025-11-10 06:28:38] 2025-11-10 05:26:38,329 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714779203392)>', '<ExcThread(monitor, started 140714428049152)>']
[2025-11-10 06:28:38] 2025-11-10 05:26:38,941 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-10 06:28:38] 2025-11-10 05:26:38,941 | INFO     | [monitor] control thread has ended
[2025-11-10 06:28:38] 2025-11-10 05:26:43,354 | INFO     | all workflow threads have been joined
[2025-11-10 06:28:38] 2025-11-10 05:26:43,354 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-10 06:28:38] 2025-11-10 05:26:43,355 | INFO     | traces error code: 0
[2025-11-10 06:28:38] 2025-11-10 05:26:43,355 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-10 06:28:38] 2025-11-10 05:26:43,533 [wrapper] ==== pilot stdout END ====
[2025-11-10 06:28:38] 2025-11-10 05:26:43,537 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-10 06:28:38] 2025-11-10 05:26:43,540 [wrapper] pilotpid: 3306713
[2025-11-10 06:28:38] 2025-11-10 05:26:43,543 [wrapper] Pilot exit status: 0
[2025-11-10 06:28:38] 2025-11-10 05:26:43,555 [wrapper] pandaids: 6874039828
[2025-11-10 06:28:38] 2025-11-10 05:26:43,625 [wrapper] cleanup supervisor_pilot  496176 3306714
[2025-11-10 06:28:38] 2025-11-10 05:26:43,630 [wrapper] Test setup, not cleaning
[2025-11-10 06:28:38] 2025-11-10 05:26:43,635 [wrapper] apfmon messages muted
[2025-11-10 06:28:38] 2025-11-10 05:26:43,638 [wrapper] ==== wrapper stdout END ====
[2025-11-10 06:28:38] 2025-11-10 05:26:43,640 [wrapper] ==== wrapper stderr END ====
[2025-11-10 06:28:38]  *** Error codes and diagnostics ***
[2025-11-10 06:28:38]     "exeErrorCode": 0,
[2025-11-10 06:28:38]     "exeErrorDiag": "",
[2025-11-10 06:28:38]     "pilotErrorCode": 0,
[2025-11-10 06:28:38]     "pilotErrorDiag": "",
[2025-11-10 06:28:38]  *** Listing of results directory ***
[2025-11-10 06:28:38] total 1543452
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc     576529 Nov  6 12:52 pilot3.tar.gz
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc       5112 Nov  6 13:34 queuedata.json
[2025-11-10 06:28:38] -rwx------ 1 boinc boinc      36292 Nov  6 13:34 runpilot2-wrapper.sh
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc        100 Nov  9 17:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-10 06:28:38] -rwxr-xr-x 1 boinc boinc       7986 Nov  9 17:25 run_atlas
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc        105 Nov  9 17:25 job.xml
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc       6665 Nov  9 17:25 init_data.xml
[2025-11-10 06:28:38] -rw-r--r-- 2 boinc boinc  320566515 Nov  9 17:25 EVNT.16513204._000018.pool.root.1
[2025-11-10 06:28:38] -rw-r--r-- 2 boinc boinc      15120 Nov  9 17:25 start_atlas.sh
[2025-11-10 06:28:38] drwxrwx--x 2 boinc boinc       4096 Nov  9 17:25 shared
[2025-11-10 06:28:38] -rw-r--r-- 2 boinc boinc     590125 Nov  9 17:25 input.tar.gz
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc          0 Nov  9 17:25 boinc_lockfile
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc       2918 Nov  9 17:25 pandaJob.out
[2025-11-10 06:28:38] -rw------- 1 boinc boinc     985844 Nov  9 17:25 agis_schedconf.cvmfs.json
[2025-11-10 06:28:38] drwx------ 5 boinc boinc       4096 Nov  9 17:25 pilot3
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc        532 Nov 10 06:12 boinc_task_state.xml
[2025-11-10 06:28:38] -rw------- 1 boinc boinc 1237783154 Nov 10 06:25 HITS.47264539._000178.pool.root.1
[2025-11-10 06:28:38] -rw------- 1 boinc boinc       1041 Nov 10 06:25 memory_monitor_summary.json
[2025-11-10 06:28:38] -rw------- 1 boinc boinc         95 Nov 10 06:25 pilot_heartbeat.json
[2025-11-10 06:28:38] -rw------- 1 boinc boinc    1560632 Nov 10 06:25 agis_ddmendpoints.agis.ALL.json
[2025-11-10 06:28:38] -rw------- 1 boinc boinc    2512036 Nov 10 06:25 log.47264539._000178.job.log.tgz.1
[2025-11-10 06:28:38] -rw------- 1 boinc boinc      27898 Nov 10 06:25 heartbeat.json
[2025-11-10 06:28:38] -rw------- 1 boinc boinc       4827 Nov 10 06:26 pilotlog.txt
[2025-11-10 06:28:38] -rw------- 1 boinc boinc    6562104 Nov 10 06:26 log.47264539._000178.job.log.1
[2025-11-10 06:28:38] -rw------- 1 boinc boinc        353 Nov 10 06:26 output.list
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc        620 Nov 10 06:26 runtime_log
[2025-11-10 06:28:38] -rw------- 1 boinc boinc    9113600 Nov 10 06:26 result.tar.gz
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc       8765 Nov 10 06:26 runtime_log.err
[2025-11-10 06:28:38] -rw------- 1 boinc boinc        672 Nov 10 06:26 kvZKDmsMEb8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmJJODmNmbnZm.diag
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc         28 Nov 10 06:28 wrapper_checkpoint.txt
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc       8192 Nov 10 06:28 boinc_mmap_file
[2025-11-10 06:28:38] -rw-r--r-- 1 boinc boinc      21360 Nov 10 06:28 stderr.txt
[2025-11-10 06:28:38] HITS file was successfully produced:
[2025-11-10 06:28:38] -rw------- 1 boinc boinc 1237783154 Nov 10 06:25 shared/HITS.pool.root.1
[2025-11-10 06:28:38]  *** Contents of shared directory: ***
[2025-11-10 06:28:38] total 1531336
[2025-11-10 06:28:38] -rw-r--r-- 2 boinc boinc  320566515 Nov  9 17:25 ATLAS.root_0
[2025-11-10 06:28:38] -rw-r--r-- 2 boinc boinc      15120 Nov  9 17:25 start_atlas.sh
[2025-11-10 06:28:38] -rw-r--r-- 2 boinc boinc     590125 Nov  9 17:25 input.tar.gz
[2025-11-10 06:28:38] -rw------- 1 boinc boinc 1237783154 Nov 10 06:25 HITS.pool.root.1
[2025-11-10 06:28:38] -rw------- 1 boinc boinc    9113600 Nov 10 06:26 result.tar.gz
06:28:40 (3302262): run_atlas exited; CPU time 549751.026443
06:28:40 (3302262): called boinc_finish(0)

</stderr_txt>
]]>

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