Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:36:01 (15550): wrapper (7.7.26015): starting
12:36:01 (15550): wrapper: running run_atlas (--nthreads 12)
[2025-11-05 12:36:01] Arguments: --nthreads 12
[2025-11-05 12:36:01] Threads: 12
[2025-11-05 12:36:01] Checking for CVMFS
[2025-11-05 12:36:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-05 12:36:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-05 12:36:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-05 12:36:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-05 12:36:01] 2.11.2.0 3103 47725 96712 152521 1 1 15863858 20275200 1 130560 0 30077361 99.988 1571103 26707 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-05 12:36:01] CVMFS is ok
[2025-11-05 12:36:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-05 12:36:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-05 12:36:01] Further information can be found at the LHC@home message board.
[2025-11-05 12:36:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-05 12:36:01] Checking for apptainer binary...
[2025-11-05 12:36:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-05 12:36:01] Running /usr/bin/apptainer --version
[2025-11-05 12:36:01] apptainer version 1.3.2-1.el7
[2025-11-05 12:36:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-05 12:36:02] c-115-41.aglt2.org
[2025-11-05 12:36:02] apptainer works
[2025-11-05 12:36:03] Set ATHENA_PROC_NUMBER=12
[2025-11-05 12:36:03] Set ATHENA_CORE_NUMBER=12
[2025-11-05 12:36:03] Starting ATLAS job with PandaID=6864230423
[2025-11-05 12:36:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-05 13:36:28]  *** The last 200 lines of the pilot log: ***
[2025-11-05 13:36:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-11-05 13:36:28]  replicas=None
[2025-11-05 13:36:28]  scope=mc23_13p6TeV
[2025-11-05 13:36:28]  status=None
[2025-11-05 13:36:28]  status_code=0
[2025-11-05 13:36:28]  storage_token=
[2025-11-05 13:36:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6864230423/log.47081490._006310.job.log.tgz.1
[2025-11-05 13:36:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/35/log.47081490._006310.job.log.tgz.1
[2025-11-05 13:36:28]  workdir=None
[2025-11-05 13:36:28] ]
[2025-11-05 13:36:28] 2025-11-05 18:35:24,078 | INFO     | transferring file log.47081490._006310.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6864230423/log.47081490._006310.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-11-05 13:36:28] 2025-11-05 18:35:24,078 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6864230423/log.47081490._006310.job.log.tgz.1 /tmp/boinchome/slots/0/log.47081490._006310.job
[2025-11-05 13:36:28] 2025-11-05 18:35:24,108 | INFO     | adding to output.list: log.47081490._006310.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/35/log.47081490._006310.job.log.tg
[2025-11-05 13:36:28] 2025-11-05 18:35:24,109 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-05 13:36:28] 2025-11-05 18:35:24,110 | INFO     | summary of transferred files:
[2025-11-05 13:36:28] 2025-11-05 18:35:24,110 | INFO     |  -- lfn=log.47081490._006310.job.log.tgz.1, status_code=0, status=transferred
[2025-11-05 13:36:28] 2025-11-05 18:35:24,110 | INFO     | stage-out finished correctly
[2025-11-05 13:36:28] 2025-11-05 18:35:24,135 | INFO     | time since job start (3546s) is within the limit (172800.0s)
[2025-11-05 13:36:28] 2025-11-05 18:35:24,821 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-05 13:36:28] 2025-11-05 18:35:25,702 | INFO     | monitor loop #269: job 0:6864230423 is in state 'finished'
[2025-11-05 13:36:28] 2025-11-05 18:35:25,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-05 13:36:28] 2025-11-05 18:35:26,042 | INFO     | job 6864230423 has state=finished
[2025-11-05 13:36:28] 2025-11-05 18:35:26,043 | INFO     | preparing for final server update for job 6864230423 in state='finished'
[2025-11-05 13:36:28] 2025-11-05 18:35:26,043 | INFO     | this job has now completed (state=finished)
[2025-11-05 13:36:28] 2025-11-05 18:35:26,043 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-05 13:36:28] 2025-11-05 18:35:26,044 | INFO     | log transfer has been attempted: DONE
[2025-11-05 13:36:28] 2025-11-05 18:35:26,044 | INFO     | job 6864230423 has finished - writing final server update
[2025-11-05 13:36:28] 2025-11-05 18:35:26,044 | INFO     | total number of processed events: 400 (read)
[2025-11-05 13:36:28] 2025-11-05 18:35:26,045 | INFO     | executing command: lscpu
[2025-11-05 13:36:28] 2025-11-05 18:35:26,072 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-05 13:36:28] 2025-11-05 18:35:26,141 | INFO     | time since job start (3548s) is within the limit (172800.0s)
[2025-11-05 13:36:28] 2025-11-05 18:35:28,146 | INFO     | time since job start (3550s) is within the limit (172800.0s)
[2025-11-05 13:36:28] 2025-11-05 18:35:28,205 | INFO     | monitor loop #270: job 0:6864230423 is in state 'finished'
[2025-11-05 13:36:28] 2025-11-05 18:35:28,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-05 13:36:28] 2025-11-05 18:35:30,151 | INFO     | time since job start (3552s) is within the limit (172800.0s)
[2025-11-05 13:36:28] 2025-11-05 18:35:30,671 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-05 13:36:28] 2025-11-05 18:35:30,674 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-05 13:36:28] 2025-11-05 18:35:30,677 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6864230423/memory_monitor_summary.json (trf name=prmon)
[2025-11-05 13:36:28] 2025-11-05 18:35:30,678 | INFO     | extracted standard info from prmon json
[2025-11-05 13:36:28] 2025-11-05 18:35:30,678 | INFO     | extracted standard memory fields from prmon json
[2025-11-05 13:36:28] 2025-11-05 18:35:30,679 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-05 13:36:28] 2025-11-05 18:35:30,679 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-05 13:36:28] 2025-11-05 18:35:30,679 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-05 13:36:28] 2025-11-05 18:35:30,680 | INFO     | fitting pss+swap vs Time
[2025-11-05 13:36:28] 2025-11-05 18:35:30,681 | INFO     | sum of square deviations: 41117050.0
[2025-11-05 13:36:28] 2025-11-05 18:35:30,681 | INFO     | sum of deviations: 1837776036.0
[2025-11-05 13:36:28] 2025-11-05 18:35:30,681 | INFO     | mean x: 1762366036.0
[2025-11-05 13:36:28] 2025-11-05 18:35:30,681 | INFO     | mean y: 2973365.0
[2025-11-05 13:36:28] 2025-11-05 18:35:30,681 | INFO     | -- intersect: -78768097702.13914
[2025-11-05 13:36:28] 2025-11-05 18:35:30,681 | INFO     | intersect: -78768097702.13914
[2025-11-05 13:36:28] 2025-11-05 18:35:30,681 | INFO     | chi2: 0.02828781730875261
[2025-11-05 13:36:28] 2025-11-05 18:35:30,682 | INFO     | -- intersect: -78768097702.13914
[2025-11-05 13:36:28] 2025-11-05 18:35:30,682 | INFO     | current memory leak: 44.70 B/s (using 51 data points, chi2=0.03)
[2025-11-05 13:36:28] 2025-11-05 18:35:30,682 | INFO     | could have reported an average CPU frequency of 1935 MHz (5 samples)
[2025-11-05 13:36:28] 2025-11-05 18:35:30,682 | INFO     | ..............................
[2025-11-05 13:36:28] 2025-11-05 18:35:30,682 | INFO     | . Timing measurements:
[2025-11-05 13:36:28] 2025-11-05 18:35:30,682 | INFO     | . get job = 0 s
[2025-11-05 13:36:28] 2025-11-05 18:35:30,682 | INFO     | . initial setup = 2 s
[2025-11-05 13:36:28] 2025-11-05 18:35:30,683 | INFO     | . payload setup = 7 s
[2025-11-05 13:36:28] 2025-11-05 18:35:30,683 | INFO     | . stage-in = 0 s
[2025-11-05 13:36:28] 2025-11-05 18:35:30,683 | INFO     | . payload execution = 3518 s
[2025-11-05 13:36:28] 2025-11-05 18:35:30,683 | INFO     | . stage-out = 0 s
[2025-11-05 13:36:28] 2025-11-05 18:35:30,683 | INFO     | . log creation = 0 s
[2025-11-05 13:36:28] 2025-11-05 18:35:30,683 | INFO     | ..............................
[2025-11-05 13:36:28] 2025-11-05 18:35:30,759 | INFO     | 
[2025-11-05 13:36:28] 2025-11-05 18:35:30,759 | INFO     | job summary report
[2025-11-05 13:36:28] 2025-11-05 18:35:30,759 | INFO     | --------------------------------------------------
[2025-11-05 13:36:28] 2025-11-05 18:35:30,760 | INFO     | PanDA job id: 6864230423
[2025-11-05 13:36:28] 2025-11-05 18:35:30,760 | INFO     | task id: 47081490
[2025-11-05 13:36:28] 2025-11-05 18:35:30,760 | INFO     | errors: (none)
[2025-11-05 13:36:28] 2025-11-05 18:35:30,760 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-05 13:36:28] 2025-11-05 18:35:30,760 | INFO     | pilot state: finished 
[2025-11-05 13:36:28] 2025-11-05 18:35:30,760 | INFO     | transexitcode: 0
[2025-11-05 13:36:28] 2025-11-05 18:35:30,761 | INFO     | exeerrorcode: 0
[2025-11-05 13:36:28] 2025-11-05 18:35:30,761 | INFO     | exeerrordiag: 
[2025-11-05 13:36:28] 2025-11-05 18:35:30,761 | INFO     | exitcode: 0
[2025-11-05 13:36:28] 2025-11-05 18:35:30,761 | INFO     | exitmsg: OK
[2025-11-05 13:36:28] 2025-11-05 18:35:30,761 | INFO     | cpuconsumptiontime: 37383 s
[2025-11-05 13:36:28] 2025-11-05 18:35:30,761 | INFO     | nevents: 400
[2025-11-05 13:36:28] 2025-11-05 18:35:30,761 | INFO     | neventsw: 0
[2025-11-05 13:36:28] 2025-11-05 18:35:30,762 | INFO     | pid: 25732
[2025-11-05 13:36:28] 2025-11-05 18:35:30,762 | INFO     | pgrp: 25732
[2025-11-05 13:36:28] 2025-11-05 18:35:30,762 | INFO     | corecount: 12
[2025-11-05 13:36:28] 2025-11-05 18:35:30,762 | INFO     | event service: False
[2025-11-05 13:36:28] 2025-11-05 18:35:30,762 | INFO     | sizes: {0: 2348876, 5: 2349138, 11: 2349194, 3529: 2374800, 3530: 2383854, 3536: 2384024}
[2025-11-05 13:36:28] 2025-11-05 18:35:30,763 | INFO     | --------------------------------------------------
[2025-11-05 13:36:28] 2025-11-05 18:35:30,763 | INFO     | 
[2025-11-05 13:36:28] 2025-11-05 18:35:30,763 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-05 13:36:28] 2025-11-05 18:35:30,789 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,789 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,789 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,789 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,790 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,790 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,790 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,790 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,790 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,790 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,791 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-05 13:36:28] 2025-11-05 18:35:30,792 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,792 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-05 13:36:28] 2025-11-05 18:35:30,792 | INFO     | job 6864230423 has completed (purged errors)
[2025-11-05 13:36:28] 2025-11-05 18:35:30,792 | INFO     | overall cleanup function is called
[2025-11-05 13:36:28] 2025-11-05 18:35:31,800 | INFO     | --- collectZombieJob: --- 10, [25732]
[2025-11-05 13:36:28] 2025-11-05 18:35:31,800 | INFO     | zombie collector waiting for pid 25732
[2025-11-05 13:36:28] 2025-11-05 18:35:31,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-05 13:36:28] 2025-11-05 18:35:31,801 | INFO     | collected zombie processes
[2025-11-05 13:36:28] 2025-11-05 18:35:31,801 | INFO     | will attempt to kill all subprocesses of pid=25732
[2025-11-05 13:36:28] 2025-11-05 18:35:31,890 | INFO     | process IDs to be killed: [25732] (in reverse order)
[2025-11-05 13:36:28] 2025-11-05 18:35:31,939 | WARNING  | found no corresponding commands to process id(s)
[2025-11-05 13:36:28] 2025-11-05 18:35:31,940 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-05 13:36:28] 2025-11-05 18:35:31,944 | INFO     | did not find any defunct processes belonging to 25732
[2025-11-05 13:36:28] 2025-11-05 18:35:31,948 | INFO     | did not find any defunct processes belonging to 25732
[2025-11-05 13:36:28] 2025-11-05 18:35:31,948 | INFO     | ready for new job
[2025-11-05 13:36:28] 2025-11-05 18:35:31,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-05 13:36:28] 2025-11-05 18:35:31,949 | INFO     | ***************************************
[2025-11-05 13:36:28] 2025-11-05 18:35:31,949 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-11-05 13:36:28] 2025-11-05 18:35:31,949 | INFO     | ***************************************
[2025-11-05 13:36:28] 2025-11-05 18:35:31,950 | INFO     | 
[2025-11-05 13:36:28] 2025-11-05 18:35:31,950 | INFO     | architecture information:
[2025-11-05 13:36:28] 2025-11-05 18:35:31,951 | INFO     | executing command: cat /etc/os-release
[2025-11-05 13:36:28] 2025-11-05 18:35:31,968 | INFO     | cat /etc/os-release:
[2025-11-05 13:36:28] NAME="CentOS Linux"
[2025-11-05 13:36:28] VERSION="7 (Core)"
[2025-11-05 13:36:28] ID="centos"
[2025-11-05 13:36:28] ID_LIKE="rhel fedora"
[2025-11-05 13:36:28] VERSION_ID="7"
[2025-11-05 13:36:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-05 13:36:28] ANSI_COLOR="0;31"
[2025-11-05 13:36:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-05 13:36:28] HOME_URL="https://www.centos.org/"
[2025-11-05 13:36:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-05 13:36:28] 
[2025-11-05 13:36:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-05 13:36:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-05 13:36:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-05 13:36:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-05 13:36:28] 
[2025-11-05 13:36:28] 2025-11-05 18:35:31,968 | INFO     | ***************************************
[2025-11-05 13:36:28] 2025-11-05 18:35:32,471 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-05 13:36:28] 2025-11-05 18:35:32,489 | INFO     | sufficient remaining disk space (18600689664 B)
[2025-11-05 13:36:28] 2025-11-05 18:35:32,490 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-05 13:36:28] 2025-11-05 18:35:32,490 | INFO     | current server update state: UPDATING_FINAL
[2025-11-05 13:36:28] 2025-11-05 18:35:32,490 | INFO     | update_server=False
[2025-11-05 13:36:28] 2025-11-05 18:35:32,490 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-05 13:36:28] 2025-11-05 18:35:32,491 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-05 13:36:28] 2025-11-05 18:35:32,491 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-05 13:36:28] 2025-11-05 18:35:32,491 | INFO     | aborting loop
[2025-11-05 13:36:28] 2025-11-05 18:35:32,492 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-05 13:36:28] 2025-11-05 18:35:32,741 | INFO     | all data control threads have been joined
[2025-11-05 13:36:28] 2025-11-05 18:35:32,813 | INFO     | all job control threads have been joined
[2025-11-05 13:36:28] 2025-11-05 18:35:33,033 | INFO     | all payload control threads have been joined
[2025-11-05 13:36:28] 2025-11-05 18:35:33,496 | INFO     | [job] retrieve thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:33,496 | INFO     | [job] queue monitor thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:33,497 | INFO     | [job] job monitor thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:33,747 | INFO     | [data] control thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:33,818 | INFO     | [job] control thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:33,941 | INFO     | [payload] validate_post thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:34,017 | INFO     | [payload] failed_post thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:34,035 | INFO     | [payload] control thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:34,231 | INFO     | [job] validate thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:34,231 | INFO     | [job] create_data_payload thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:34,497 | INFO     | [data] copytool_out thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:34,768 | INFO     | [payload] execute_payloads thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:34,802 | INFO     | [data] copytool_in thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:34,811 | INFO     | [payload] validate_pre thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:35,405 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-05 13:36:28] 2025-11-05 18:35:39,407 | INFO     | [data] queue_monitor thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:35:42,674 | INFO     | job.realtimelogging is not enabled
[2025-11-05 13:36:28] 2025-11-05 18:35:43,679 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-05 13:36:28] 2025-11-05 18:36:03,346 | INFO     | PID=19370 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-05 13:36:28] 2025-11-05 18:36:03,347 | INFO     | found 0 job(s) in 20 queues
[2025-11-05 13:36:28] 2025-11-05 18:36:03,347 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-05 13:36:28] 2025-11-05 18:36:03,347 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-05 13:36:28] 2025-11-05 18:36:15,213 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-11-05 13:36:28] 2025-11-05 18:36:23,287 | INFO     | [monitor] cgroup control has ended
[2025-11-05 13:36:28] 2025-11-05 18:36:23,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178530281280)>', '<ExcThread(monitor, started 140177792034560)>']
[2025-11-05 13:36:28] 2025-11-05 18:36:23,437 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-05 13:36:28] 2025-11-05 18:36:23,437 | INFO     | [monitor] control thread has ended
[2025-11-05 13:36:28] 2025-11-05 18:36:28,335 | INFO     | all workflow threads have been joined
[2025-11-05 13:36:28] 2025-11-05 18:36:28,336 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-05 13:36:28] 2025-11-05 18:36:28,342 | INFO     | traces error code: 0
[2025-11-05 13:36:28] 2025-11-05 18:36:28,344 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-05 13:36:28] 2025-11-05 18:36:28,434 [wrapper] ==== pilot stdout END ====
[2025-11-05 13:36:28] 2025-11-05 18:36:28,438 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-05 13:36:28] 2025-11-05 18:36:28,442 [wrapper] pilotpid: 19370
[2025-11-05 13:36:28] 2025-11-05 18:36:28,446 [wrapper] Pilot exit status: 0
[2025-11-05 13:36:28] 2025-11-05 18:36:28,460 [wrapper] pandaids: 6864230423
[2025-11-05 13:36:28] 2025-11-05 18:36:28,503 [wrapper] cleanup supervisor_pilot 23743 19371
[2025-11-05 13:36:28] 2025-11-05 18:36:28,507 [wrapper] Test setup, not cleaning
[2025-11-05 13:36:28] 2025-11-05 18:36:28,510 [wrapper] apfmon messages muted
[2025-11-05 13:36:28] 2025-11-05 18:36:28,514 [wrapper] ==== wrapper stdout END ====
[2025-11-05 13:36:28] 2025-11-05 18:36:28,518 [wrapper] ==== wrapper stderr END ====
[2025-11-05 13:36:28]  *** Error codes and diagnostics ***
[2025-11-05 13:36:28]     "exeErrorCode": 0,
[2025-11-05 13:36:28]     "exeErrorDiag": "",
[2025-11-05 13:36:28]     "pilotErrorCode": 0,
[2025-11-05 13:36:28]     "pilotErrorDiag": "",
[2025-11-05 13:36:28]  *** Listing of results directory ***
[2025-11-05 13:36:28] total 395360
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas    557409 Oct 29 01:27 pilot3.tar.gz
[2025-11-05 13:36:28] -rwx------ 1 boincer umatlas     36292 Oct 29 01:28 runpilot2-wrapper.sh
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas      5112 Oct 29 01:29 queuedata.json
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas       100 Nov  5 12:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-05 13:36:28] -rwxr-xr-x 1 boincer umatlas      7986 Nov  5 12:36 run_atlas
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas       105 Nov  5 12:36 job.xml
[2025-11-05 13:36:28] -rw-r--r-- 2 boincer umatlas 216206679 Nov  5 12:36 EVNT.47081487._000243.pool.root.1
[2025-11-05 13:36:28] -rw-r--r-- 2 boincer umatlas     15120 Nov  5 12:36 start_atlas.sh
[2025-11-05 13:36:28] drwxrwx--x 2 boincer umatlas      4096 Nov  5 12:36 shared
[2025-11-05 13:36:28] -rw-r--r-- 2 boincer umatlas    569676 Nov  5 12:36 input.tar.gz
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas         0 Nov  5 12:36 boinc_lockfile
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas      2521 Nov  5 12:36 pandaJob.out
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas    985837 Nov  5 12:36 agis_schedconf.cvmfs.json
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas   1560632 Nov  5 12:36 agis_ddmendpoints.agis.ALL.json
[2025-11-05 13:36:28] drwx------ 5 boincer umatlas      4096 Nov  5 12:36 pilot3
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas      5953 Nov  5 13:30 init_data.xml
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas 182968725 Nov  5 13:34 HITS.47081490._006310.pool.root.1
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas       529 Nov  5 13:35 boinc_task_state.xml
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas      1045 Nov  5 13:35 memory_monitor_summary.json
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas    355708 Nov  5 13:35 log.47081490._006310.job.log.tgz.1
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas      7842 Nov  5 13:35 heartbeat.json
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas        95 Nov  5 13:36 pilot_heartbeat.json
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas      8192 Nov  5 13:36 boinc_mmap_file
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas        27 Nov  5 13:36 wrapper_checkpoint.txt
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas      4818 Nov  5 13:36 pilotlog.txt
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas    528041 Nov  5 13:36 log.47081490._006310.job.log.1
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas       357 Nov  5 13:36 output.list
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas       620 Nov  5 13:36 runtime_log
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas    901120 Nov  5 13:36 result.tar.gz
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas      8705 Nov  5 13:36 runtime_log.err
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas       659 Nov  5 13:36 LywLDmnuDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrhFODmkA8cRo.diag
[2025-11-05 13:36:28] -rw-r--r-- 1 boincer umatlas     21781 Nov  5 13:36 stderr.txt
[2025-11-05 13:36:28] HITS file was successfully produced:
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas 182968725 Nov  5 13:34 shared/HITS.pool.root.1
[2025-11-05 13:36:28]  *** Contents of shared directory: ***
[2025-11-05 13:36:28] total 391284
[2025-11-05 13:36:28] -rw-r--r-- 2 boincer umatlas 216206679 Nov  5 12:36 ATLAS.root_0
[2025-11-05 13:36:28] -rw-r--r-- 2 boincer umatlas     15120 Nov  5 12:36 start_atlas.sh
[2025-11-05 13:36:28] -rw-r--r-- 2 boincer umatlas    569676 Nov  5 12:36 input.tar.gz
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas 182968725 Nov  5 13:34 HITS.pool.root.1
[2025-11-05 13:36:28] -rw------- 1 boincer umatlas    901120 Nov  5 13:36 result.tar.gz
13:36:30 (15550): run_atlas exited; CPU time 37375.815255
13:36:30 (15550): called boinc_finish(0)

</stderr_txt>
]]>

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