Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:32:35 (738113): wrapper (7.7.26015): starting
10:32:35 (738113): wrapper: running run_atlas (--nthreads 9)
[2025-11-05 10:32:35] Arguments: --nthreads 9
[2025-11-05 10:32:35] Threads: 9
[2025-11-05 10:32:35] Checking for CVMFS
[2025-11-05 10:32:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-05 10:32:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-05 10:32:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-05 10:32:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-05 10:32:36] 2.13.3.0 835514 10020 211860 152515 2 13 25075463 32503809 1586 16776704 0 30679 99.959 76431 39499 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-05 10:32:36] CVMFS is ok
[2025-11-05 10:32:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-05 10:32:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-05 10:32:36] Further information can be found at the LHC@home message board.
[2025-11-05 10:32:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-05 10:32:36] Checking for apptainer binary...
[2025-11-05 10:32:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-05 10:32:36] Running /usr/bin/apptainer --version
[2025-11-05 10:32:36] apptainer version 1.4.3-1.el9
[2025-11-05 10:32:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-05 10:32:36] c-4-35.aglt2.org
[2025-11-05 10:32:36] apptainer works
[2025-11-05 10:32:36] Set ATHENA_PROC_NUMBER=9
[2025-11-05 10:32:36] Set ATHENA_CORE_NUMBER=9
[2025-11-05 10:32:36] Starting ATLAS job with PandaID=6864230425
[2025-11-05 10:32:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-05 11:21:52]  *** The last 200 lines of the pilot log: ***
[2025-11-05 11:21:52]  scope=mc23_13p6TeV
[2025-11-05 11:21:52]  status=None
[2025-11-05 11:21:52]  status_code=0
[2025-11-05 11:21:52]  storage_token=
[2025-11-05 11:21:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6864230425/log.47081490._006312.job.log.tgz.1
[2025-11-05 11:21:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/9a/log.47081490._006312.job.log.tgz.1
[2025-11-05 11:21:52]  workdir=None
[2025-11-05 11:21:52] ]
[2025-11-05 11:21:52] 2025-11-05 16:21:10,831 | INFO     | transferring file log.47081490._006312.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6864230425/log.47081490._006312.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-11-05 11:21:52] 2025-11-05 16:21:10,832 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6864230425/log.47081490._006312.job.log.tgz.1 /tmp/boinchome/slots/0/log.47081490._006312.job
[2025-11-05 11:21:52] 2025-11-05 16:21:10,841 | INFO     | adding to output.list: log.47081490._006312.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/9a/log.47081490._006312.job.log.tg
[2025-11-05 11:21:52] 2025-11-05 16:21:10,842 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-05 11:21:52] 2025-11-05 16:21:10,842 | INFO     | summary of transferred files:
[2025-11-05 11:21:52] 2025-11-05 16:21:10,842 | INFO     |  -- lfn=log.47081490._006312.job.log.tgz.1, status_code=0, status=transferred
[2025-11-05 11:21:52] 2025-11-05 16:21:10,842 | INFO     | stage-out finished correctly
[2025-11-05 11:21:52] 2025-11-05 16:21:10,893 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-05 11:21:52] 2025-11-05 16:21:11,253 | INFO     | time since job start (2908s) is within the limit (172800.0s)
[2025-11-05 11:21:52] 2025-11-05 16:21:11,645 | INFO     | monitor loop #223: job 0:6864230425 is in state 'finished'
[2025-11-05 11:21:52] 2025-11-05 16:21:11,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-05 11:21:52] 2025-11-05 16:21:13,259 | INFO     | time since job start (2910s) is within the limit (172800.0s)
[2025-11-05 11:21:52] 2025-11-05 16:21:13,674 | INFO     | job 6864230425 has state=finished
[2025-11-05 11:21:52] 2025-11-05 16:21:13,675 | INFO     | preparing for final server update for job 6864230425 in state='finished'
[2025-11-05 11:21:52] 2025-11-05 16:21:13,675 | INFO     | this job has now completed (state=finished)
[2025-11-05 11:21:52] 2025-11-05 16:21:13,675 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-05 11:21:52] 2025-11-05 16:21:13,675 | INFO     | log transfer has been attempted: DONE
[2025-11-05 11:21:52] 2025-11-05 16:21:13,675 | INFO     | job 6864230425 has finished - writing final server update
[2025-11-05 11:21:52] 2025-11-05 16:21:13,676 | INFO     | total number of processed events: 400 (read)
[2025-11-05 11:21:52] 2025-11-05 16:21:13,676 | INFO     | executing command: lscpu
[2025-11-05 11:21:52] 2025-11-05 16:21:13,709 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-05 11:21:52] 2025-11-05 16:21:14,147 | INFO     | monitor loop #224: job 0:6864230425 is in state 'finished'
[2025-11-05 11:21:52] 2025-11-05 16:21:14,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-05 11:21:52] 2025-11-05 16:21:15,264 | INFO     | time since job start (2912s) is within the limit (172800.0s)
[2025-11-05 11:21:52] 2025-11-05 16:21:15,265 | INFO     | 2914s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-05 11:21:52] 2025-11-05 16:21:15,854 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-05 11:21:52] 2025-11-05 16:21:15,858 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 3339.761
[2025-11-05 11:21:52] 2025-11-05 16:21:15,862 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6864230425/memory_monitor_summary.json (trf name=prmon)
[2025-11-05 11:21:52] 2025-11-05 16:21:15,862 | INFO     | extracted standard info from prmon json
[2025-11-05 11:21:52] 2025-11-05 16:21:15,862 | INFO     | extracted standard memory fields from prmon json
[2025-11-05 11:21:52] 2025-11-05 16:21:15,862 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-05 11:21:52] 2025-11-05 16:21:15,862 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-05 11:21:52] 2025-11-05 16:21:15,862 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-05 11:21:52] 2025-11-05 16:21:15,863 | INFO     | fitting pss+swap vs Time
[2025-11-05 11:21:52] 2025-11-05 16:21:15,863 | INFO     | sum of square deviations: 21358540.0
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | sum of deviations: 351347983.0
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | mean x: 1762358308.0
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | mean y: 2703050.7073170734
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | -- intersect: -28988091115.89268
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | intersect: -28988091115.89268
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | chi2: 0.0016222766891366646
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | -- intersect: -28988091115.89268
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | current memory leak: 16.45 B/s (using 41 data points, chi2=0.00)
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | could have reported an average CPU frequency of 3299 MHz (5 samples)
[2025-11-05 11:21:52] 2025-11-05 16:21:15,864 | INFO     | ..............................
[2025-11-05 11:21:52] 2025-11-05 16:21:15,865 | INFO     | . Timing measurements:
[2025-11-05 11:21:52] 2025-11-05 16:21:15,865 | INFO     | . get job = 0 s
[2025-11-05 11:21:52] 2025-11-05 16:21:15,865 | INFO     | . initial setup = 2 s
[2025-11-05 11:21:52] 2025-11-05 16:21:15,865 | INFO     | . payload setup = 3 s
[2025-11-05 11:21:52] 2025-11-05 16:21:15,865 | INFO     | . stage-in = 0 s
[2025-11-05 11:21:52] 2025-11-05 16:21:15,865 | INFO     | . payload execution = 2886 s
[2025-11-05 11:21:52] 2025-11-05 16:21:15,865 | INFO     | . stage-out = 0 s
[2025-11-05 11:21:52] 2025-11-05 16:21:15,865 | INFO     | . log creation = 0 s
[2025-11-05 11:21:52] 2025-11-05 16:21:15,865 | INFO     | ..............................
[2025-11-05 11:21:52] 2025-11-05 16:21:15,918 | INFO     | 
[2025-11-05 11:21:52] 2025-11-05 16:21:15,918 | INFO     | job summary report
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | --------------------------------------------------
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | PanDA job id: 6864230425
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | task id: 47081490
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | errors: (none)
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | pilot state: finished 
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | transexitcode: 0
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | exeerrorcode: 0
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | exeerrordiag: 
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | exitcode: 0
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | exitmsg: OK
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | cpuconsumptiontime: 23947 s
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | nevents: 400
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | neventsw: 0
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | pid: 748734
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | pgrp: 748734
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | corecount: 9
[2025-11-05 11:21:52] 2025-11-05 16:21:15,919 | INFO     | event service: False
[2025-11-05 11:21:52] 2025-11-05 16:21:15,920 | INFO     | sizes: {0: 2348880, 2: 2349142, 11: 2349170, 2893: 2374590, 2894: 2383644, 2899: 2383814}
[2025-11-05 11:21:52] 2025-11-05 16:21:15,920 | INFO     | --------------------------------------------------
[2025-11-05 11:21:52] 2025-11-05 16:21:15,920 | INFO     | 
[2025-11-05 11:21:52] 2025-11-05 16:21:15,920 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-05 11:21:52] 2025-11-05 16:21:15,929 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,930 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,931 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,931 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,931 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-05 11:21:52] 2025-11-05 16:21:15,931 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,931 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-05 11:21:52] 2025-11-05 16:21:15,931 | INFO     | job 6864230425 has completed (purged errors)
[2025-11-05 11:21:52] 2025-11-05 16:21:15,931 | INFO     | overall cleanup function is called
[2025-11-05 11:21:52] 2025-11-05 16:21:16,446 | INFO     | PID=741827 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-05 11:21:52] 2025-11-05 16:21:16,446 | INFO     | .. there are 3 such processes running
[2025-11-05 11:21:52] 2025-11-05 16:21:16,938 | INFO     | --- collectZombieJob: --- 10, [748734]
[2025-11-05 11:21:52] 2025-11-05 16:21:16,938 | INFO     | zombie collector waiting for pid 748734
[2025-11-05 11:21:52] 2025-11-05 16:21:16,938 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-05 11:21:52] 2025-11-05 16:21:16,938 | INFO     | collected zombie processes
[2025-11-05 11:21:52] 2025-11-05 16:21:16,938 | INFO     | will attempt to kill all subprocesses of pid=748734
[2025-11-05 11:21:52] 2025-11-05 16:21:17,069 | INFO     | process IDs to be killed: [748734] (in reverse order)
[2025-11-05 11:21:52] 2025-11-05 16:21:17,103 | WARNING  | found no corresponding commands to process id(s)
[2025-11-05 11:21:52] 2025-11-05 16:21:17,103 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-05 11:21:52] 2025-11-05 16:21:17,107 | INFO     | did not find any defunct processes belonging to 748734
[2025-11-05 11:21:52] 2025-11-05 16:21:17,110 | INFO     | did not find any defunct processes belonging to 748734
[2025-11-05 11:21:52] 2025-11-05 16:21:17,110 | INFO     | ready for new job
[2025-11-05 11:21:52] 2025-11-05 16:21:17,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-05 11:21:52] 2025-11-05 16:21:17,111 | INFO     | ***************************************
[2025-11-05 11:21:52] 2025-11-05 16:21:17,111 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-11-05 11:21:52] 2025-11-05 16:21:17,111 | INFO     | ***************************************
[2025-11-05 11:21:52] 2025-11-05 16:21:17,111 | INFO     | 
[2025-11-05 11:21:52] 2025-11-05 16:21:17,124 | INFO     | architecture information:
[2025-11-05 11:21:52] 2025-11-05 16:21:17,124 | INFO     | executing command: cat /etc/os-release
[2025-11-05 11:21:52] 2025-11-05 16:21:17,130 | INFO     | cat /etc/os-release:
[2025-11-05 11:21:52] NAME="CentOS Linux"
[2025-11-05 11:21:52] VERSION="7 (Core)"
[2025-11-05 11:21:52] ID="centos"
[2025-11-05 11:21:52] ID_LIKE="rhel fedora"
[2025-11-05 11:21:52] VERSION_ID="7"
[2025-11-05 11:21:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-05 11:21:52] ANSI_COLOR="0;31"
[2025-11-05 11:21:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-05 11:21:52] HOME_URL="https://www.centos.org/"
[2025-11-05 11:21:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-05 11:21:52] 
[2025-11-05 11:21:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-05 11:21:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-05 11:21:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-05 11:21:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-05 11:21:52] 
[2025-11-05 11:21:52] 2025-11-05 16:21:17,130 | INFO     | ***************************************
[2025-11-05 11:21:52] 2025-11-05 16:21:17,631 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-05 11:21:52] 2025-11-05 16:21:17,637 | INFO     | sufficient remaining disk space (96678707200 B)
[2025-11-05 11:21:52] 2025-11-05 16:21:17,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-05 11:21:52] 2025-11-05 16:21:17,638 | INFO     | current server update state: UPDATING_FINAL
[2025-11-05 11:21:52] 2025-11-05 16:21:17,638 | INFO     | update_server=False
[2025-11-05 11:21:52] 2025-11-05 16:21:17,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-05 11:21:52] 2025-11-05 16:21:17,638 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-05 11:21:52] 2025-11-05 16:21:17,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-05 11:21:52] 2025-11-05 16:21:17,656 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-05 11:21:52] 2025-11-05 16:21:17,656 | INFO     | aborting loop
[2025-11-05 11:21:52] 2025-11-05 16:21:18,001 | INFO     | all data control threads have been joined
[2025-11-05 11:21:52] 2025-11-05 16:21:18,638 | INFO     | [job] retrieve thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:18,643 | INFO     | [job] queue monitor thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:18,661 | INFO     | [job] job monitor thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:18,870 | INFO     | [payload] execute_payloads thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:18,907 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-05 11:21:52] 2025-11-05 16:21:18,926 | INFO     | all payload control threads have been joined
[2025-11-05 11:21:52] 2025-11-05 16:21:19,006 | INFO     | [data] control thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:19,315 | INFO     | [data] copytool_in thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:19,336 | INFO     | all job control threads have been joined
[2025-11-05 11:21:52] 2025-11-05 16:21:19,415 | INFO     | [payload] validate_post thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:19,706 | INFO     | [job] validate thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:19,795 | INFO     | [payload] validate_pre thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:19,800 | INFO     | [job] create_data_payload thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:19,931 | INFO     | [payload] control thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:20,013 | INFO     | [payload] failed_post thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:20,341 | INFO     | [job] control thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:20,913 | INFO     | [data] copytool_out thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:21,644 | INFO     | [data] queue_monitor thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:28,527 | INFO     | job.realtimelogging is not enabled
[2025-11-05 11:21:52] 2025-11-05 16:21:29,533 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-05 11:21:52] 2025-11-05 16:21:46,945 | INFO     | [monitor] cgroup control has ended
[2025-11-05 11:21:52] 2025-11-05 16:21:47,616 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140069496899392)>', '<ExcThread(monitor, started 140068840777472)>']
[2025-11-05 11:21:52] 2025-11-05 16:21:48,684 | INFO     | PID=741827 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-05 11:21:52] 2025-11-05 16:21:48,684 | INFO     | .. there are 3 such processes running
[2025-11-05 11:21:52] 2025-11-05 16:21:48,684 | INFO     | found 0 job(s) in 20 queues
[2025-11-05 11:21:52] 2025-11-05 16:21:48,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-05 11:21:52] 2025-11-05 16:21:48,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-05 11:21:52] 2025-11-05 16:21:48,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-05 11:21:52] 2025-11-05 16:21:48,685 | INFO     | [monitor] control thread has ended
[2025-11-05 11:21:52] 2025-11-05 16:21:52,620 | INFO     | all workflow threads have been joined
[2025-11-05 11:21:52] 2025-11-05 16:21:52,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-05 11:21:52] 2025-11-05 16:21:52,621 | INFO     | traces error code: 0
[2025-11-05 11:21:52] 2025-11-05 16:21:52,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-05 11:21:52] 2025-11-05 16:21:52,682 [wrapper] ==== pilot stdout END ====
[2025-11-05 11:21:52] 2025-11-05 16:21:52,683 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-05 11:21:52] 2025-11-05 16:21:52,685 [wrapper] pilotpid: 741827
[2025-11-05 11:21:52] 2025-11-05 16:21:52,686 [wrapper] Pilot exit status: 0
[2025-11-05 11:21:52] 2025-11-05 16:21:52,692 [wrapper] pandaids: 6864230425
[2025-11-05 11:21:52] 2025-11-05 16:21:52,718 [wrapper] cleanup supervisor_pilot  813826 741828
[2025-11-05 11:21:52] 2025-11-05 16:21:52,720 [wrapper] Test setup, not cleaning
[2025-11-05 11:21:52] 2025-11-05 16:21:52,721 [wrapper] apfmon messages muted
[2025-11-05 11:21:52] 2025-11-05 16:21:52,723 [wrapper] ==== wrapper stdout END ====
[2025-11-05 11:21:52] 2025-11-05 16:21:52,724 [wrapper] ==== wrapper stderr END ====
[2025-11-05 11:21:52]  *** Error codes and diagnostics ***
[2025-11-05 11:21:52]     "exeErrorCode": 0,
[2025-11-05 11:21:52]     "exeErrorDiag": "",
[2025-11-05 11:21:52]     "pilotErrorCode": 0,
[2025-11-05 11:21:52]     "pilotErrorDiag": "",
[2025-11-05 11:21:52]  *** Listing of results directory ***
[2025-11-05 11:21:52] total 390644
[2025-11-05 11:21:52] -rwx------. 1 boincer umatlas     36292 Oct 29 01:31 runpilot2-wrapper.sh
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas      5112 Oct 29 01:31 queuedata.json
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas    557409 Oct 29 01:31 pilot3.tar.gz
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas       100 Nov  5 10:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-05 11:21:52] -rwxr-xr-x. 1 boincer umatlas      7986 Nov  5 10:32 run_atlas
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas       105 Nov  5 10:32 job.xml
[2025-11-05 11:21:52] -rw-r--r--. 2 boincer umatlas 216206679 Nov  5 10:32 EVNT.47081487._000243.pool.root.1
[2025-11-05 11:21:52] -rw-r--r--. 2 boincer umatlas     15120 Nov  5 10:32 start_atlas.sh
[2025-11-05 11:21:52] drwxrwx--x. 2 boincer umatlas      4096 Nov  5 10:32 shared
[2025-11-05 11:21:52] -rw-r--r--. 2 boincer umatlas    569663 Nov  5 10:32 input.tar.gz
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas         0 Nov  5 10:32 boinc_lockfile
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas      2523 Nov  5 10:32 pandaJob.out
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas    985837 Nov  5 10:32 agis_schedconf.cvmfs.json
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas   1560632 Nov  5 10:32 agis_ddmendpoints.agis.ALL.json
[2025-11-05 11:21:52] drwx------. 5 boincer umatlas      4096 Nov  5 10:32 pilot3
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas 178383464 Nov  5 11:20 HITS.47081490._006312.pool.root.1
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas       529 Nov  5 11:20 boinc_task_state.xml
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas      1026 Nov  5 11:21 memory_monitor_summary.json
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas    303955 Nov  5 11:21 log.47081490._006312.job.log.tgz.1
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas        95 Nov  5 11:21 pilot_heartbeat.json
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas      6660 Nov  5 11:21 init_data.xml
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas      7797 Nov  5 11:21 heartbeat.json
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas      8192 Nov  5 11:21 boinc_mmap_file
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas        27 Nov  5 11:21 wrapper_checkpoint.txt
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas      4894 Nov  5 11:21 pilotlog.txt
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas    454652 Nov  5 11:21 log.47081490._006312.job.log.1
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas       357 Nov  5 11:21 output.list
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas       620 Nov  5 11:21 runtime_log
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas    778240 Nov  5 11:21 result.tar.gz
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas      8693 Nov  5 11:21 runtime_log.err
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas       647 Nov  5 11:21 RTYNDmtxDY8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmciFODmrUI5Fo.diag
[2025-11-05 11:21:52] -rw-r--r--. 1 boincer umatlas     21940 Nov  5 11:21 stderr.txt
[2025-11-05 11:21:52] HITS file was successfully produced:
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas 178383464 Nov  5 11:20 shared/HITS.pool.root.1
[2025-11-05 11:21:52]  *** Contents of shared directory: ***
[2025-11-05 11:21:52] total 386688
[2025-11-05 11:21:52] -rw-r--r--. 2 boincer umatlas 216206679 Nov  5 10:32 ATLAS.root_0
[2025-11-05 11:21:52] -rw-r--r--. 2 boincer umatlas     15120 Nov  5 10:32 start_atlas.sh
[2025-11-05 11:21:52] -rw-r--r--. 2 boincer umatlas    569663 Nov  5 10:32 input.tar.gz
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas 178383464 Nov  5 11:20 HITS.pool.root.1
[2025-11-05 11:21:52] -rw-------. 1 boincer umatlas    778240 Nov  5 11:21 result.tar.gz
11:21:54 (738113): run_atlas exited; CPU time 23977.098982
11:21:54 (738113): called boinc_finish(0)

</stderr_txt>
]]>

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